Wall clock time and date at job start Wed Apr 1 2020 03:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50703 * 120.00199 * 2 1 4 4 C 1.53004 * 109.47112 * 124.27842 * 3 2 1 5 5 H 1.08997 * 109.47272 * 305.92252 * 4 3 2 6 6 C 1.50702 * 109.46997 * 65.92076 * 4 3 2 7 7 O 1.21278 * 120.00094 * 25.84978 * 6 4 3 8 8 N 1.34775 * 119.99920 * 205.84793 * 6 4 3 9 9 C 1.46498 * 119.99860 * 184.94816 * 8 6 4 10 10 C 1.52997 * 109.47225 * 179.97438 * 9 8 6 11 11 O 1.42895 * 110.88970 * 297.57322 * 10 9 8 12 12 C 1.55156 * 111.00737 * 173.65145 * 10 9 8 13 13 C 1.54327 * 102.94251 * 206.42537 * 12 10 9 14 14 N 1.47015 * 107.27107 * 22.19179 * 13 12 10 15 15 C 1.36945 * 125.64685 * 181.09534 * 14 13 12 16 16 H 1.08004 * 119.99640 * 174.65270 * 15 14 13 17 17 C 1.38805 * 120.00168 * 354.65299 * 15 14 13 18 18 N 1.31619 * 120.00002 * 5.48640 * 17 15 14 19 19 Si 1.86800 * 120.00329 * 185.48692 * 17 15 14 20 20 H 1.48499 * 109.46982 * 94.99502 * 19 17 15 21 21 H 1.48501 * 109.47184 * 214.99617 * 19 17 15 22 22 H 1.48500 * 109.46696 * 334.99936 * 19 17 15 23 23 C 1.47421 * 108.70770 * 1.05898 * 14 13 12 24 24 C 1.50702 * 109.47339 * 185.92021 * 4 3 2 25 25 C 1.38237 * 119.99972 * 300.28193 * 24 4 3 26 26 C 1.38233 * 120.00028 * 180.27839 * 25 24 4 27 27 C 1.38239 * 119.99840 * 359.46360 * 26 25 24 28 28 C 1.38234 * 119.99994 * 0.25439 * 27 26 25 29 29 C 1.38231 * 120.00105 * 119.99629 * 24 4 3 30 30 H 1.08004 * 119.99850 * 179.97438 * 1 2 3 31 31 H 1.08006 * 119.99820 * 359.97438 * 1 2 3 32 32 H 1.08003 * 120.00187 * 179.97438 * 2 1 3 33 33 H 1.09002 * 109.46883 * 4.28785 * 3 2 1 34 34 H 1.09001 * 109.47454 * 244.27952 * 3 2 1 35 35 H 0.96998 * 119.99959 * 4.94678 * 8 6 4 36 36 H 1.09004 * 109.47487 * 300.00148 * 9 8 6 37 37 H 1.09002 * 109.47083 * 60.00381 * 9 8 6 38 38 H 0.96705 * 114.00132 * 59.29631 * 11 10 9 39 39 H 1.08999 * 110.71574 * 324.78532 * 12 10 9 40 40 H 1.08991 * 110.72154 * 88.05890 * 12 10 9 41 41 H 1.09000 * 109.88221 * 262.77343 * 13 12 10 42 42 H 1.09005 * 109.87833 * 141.60935 * 13 12 10 43 43 H 0.96997 * 120.00215 * 180.02562 * 18 17 15 44 44 H 1.08998 * 110.36901 * 217.03589 * 23 14 13 45 45 H 1.09003 * 110.36929 * 94.71005 * 23 14 13 46 46 H 1.08005 * 120.00043 * 0.02562 * 25 24 4 47 47 H 1.08000 * 120.00157 * 179.73712 * 26 25 24 48 48 H 1.08002 * 119.99785 * 180.27837 * 27 26 25 49 49 H 1.07999 * 119.99811 * 180.02562 * 28 27 26 50 50 H 1.08001 * 120.00028 * 0.02562 * 29 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0221 1.3405 1.1920 5 1 2.4680 1.1439 2.1098 6 6 4.0860 0.2884 1.0124 7 8 4.3848 -0.0880 -0.1011 8 7 4.7056 -0.2341 2.0892 9 6 5.8135 -1.1759 1.9114 10 6 6.3355 -1.6137 3.2814 11 8 6.8542 -0.4987 4.0091 12 6 7.4027 -2.7309 3.1389 13 6 7.2958 -3.4843 4.4815 14 7 5.9623 -3.2050 5.0338 15 6 5.4792 -3.6709 6.2275 16 1 4.5163 -3.3390 6.5868 17 6 6.2271 -4.5696 6.9756 18 7 7.4448 -4.8911 6.5932 19 14 5.5055 -5.3228 8.5252 20 1 4.9023 -6.6404 8.2005 21 1 6.5802 -5.5054 9.5337 22 1 4.4602 -4.4215 9.0732 23 6 5.2315 -2.3396 4.0902 24 6 3.6685 2.6992 1.2767 25 6 4.4241 3.1722 0.2201 26 6 5.0217 4.4161 0.3001 27 6 4.8546 5.1917 1.4321 28 6 4.0942 4.7212 2.4863 29 6 3.5009 3.4750 2.4084 30 1 -0.5400 -0.9354 -0.0004 31 1 -0.5400 0.9354 0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3576 2.1322 0.0768 34 1 2.6314 1.3968 -0.9258 35 1 4.4178 0.0134 2.9818 36 1 5.4638 -2.0485 1.3596 37 1 6.6162 -0.6918 1.3550 38 1 6.2083 0.2037 4.1657 39 1 7.1610 -3.3911 2.3059 40 1 8.3968 -2.3012 3.0159 41 1 8.0636 -3.1283 5.1685 42 1 7.4116 -4.5554 4.3157 43 1 7.9673 -5.5193 7.1158 44 1 4.6215 -1.6172 4.6325 45 1 4.6093 -2.9412 3.4276 46 1 4.5509 2.5682 -0.6662 47 1 5.6156 4.7839 -0.5236 48 1 5.3179 6.1655 1.4928 49 1 3.9633 5.3273 3.3705 50 1 2.9071 3.1073 3.2321 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754762431.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:04 Heat of formation + Delta-G solvation = -40.333707 kcal Electronic energy + Delta-G solvation = -30405.540777 eV Core-core repulsion = 26397.682386 eV Total energy + Delta-G solvation = -4007.858391 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.53673 -40.31910 -39.47623 -36.85559 -36.39003 -35.30478 -34.03524 -33.50193 -31.77100 -31.42091 -30.02438 -29.41099 -27.52584 -25.95621 -24.76943 -23.50093 -22.88304 -22.09716 -21.43222 -21.15075 -20.55749 -18.92885 -18.58376 -17.77883 -17.67340 -16.84724 -16.71822 -16.51214 -16.30460 -15.87010 -15.76859 -15.55792 -15.47837 -15.06051 -14.98079 -14.47456 -14.24231 -14.19853 -13.89175 -13.74579 -13.63091 -13.49482 -13.26143 -12.99446 -12.93128 -12.78941 -12.51800 -12.36282 -12.20351 -12.10853 -12.01404 -11.93874 -11.79086 -11.70763 -11.67490 -10.99882 -10.85698 -10.68449 -10.28469 -10.15725 -9.79872 -9.60059 -8.88730 -7.85699 -5.20799 0.38043 0.52186 1.38764 1.45897 1.48055 1.56770 1.61236 2.10981 2.48953 2.88817 3.16150 3.33690 3.44849 3.61408 3.63039 3.75703 3.87761 3.92693 3.97261 4.14577 4.20798 4.23638 4.25925 4.34518 4.45720 4.48576 4.57472 4.64760 4.66293 4.70068 4.79757 4.85580 4.91317 4.94902 5.04994 5.07604 5.08758 5.12313 5.18485 5.32706 5.44781 5.58964 5.62899 5.65404 5.65718 5.74318 5.75807 5.87628 6.11810 6.18425 6.45419 6.79491 7.08747 7.18156 7.76167 8.40758 9.25449 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012290 B = 0.002678 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.789960 B =10453.636099 C =11070.162863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.169 4.169 3 C -0.067 4.067 4 C -0.054 4.054 5 H 0.120 0.880 6 C 0.525 3.475 7 O -0.570 6.570 8 N -0.717 5.717 9 C 0.120 3.880 10 C 0.123 3.877 11 O -0.552 6.552 12 C -0.122 4.122 13 C 0.190 3.810 14 N -0.621 5.621 15 C -0.241 4.241 16 H 0.086 0.914 17 C -0.068 4.068 18 N -0.951 5.951 19 Si 0.979 3.021 20 H -0.288 1.288 21 H -0.297 1.297 22 H -0.264 1.264 23 C 0.115 3.885 24 C -0.087 4.087 25 C -0.123 4.123 26 C -0.130 4.130 27 C -0.124 4.124 28 C -0.124 4.124 29 C -0.112 4.112 30 H 0.101 0.899 31 H 0.113 0.887 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.070 0.930 35 H 0.409 0.591 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.382 0.618 39 H 0.093 0.907 40 H 0.081 0.919 41 H 0.004 0.996 42 H 0.012 0.988 43 H 0.246 0.754 44 H 0.055 0.945 45 H 0.033 0.967 46 H 0.111 0.889 47 H 0.132 0.868 48 H 0.140 0.860 49 H 0.144 0.856 50 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.450 20.732 -12.655 26.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.187 4.187 3 C -0.104 4.104 4 C -0.075 4.075 5 H 0.138 0.862 6 C 0.312 3.688 7 O -0.449 6.449 8 N -0.369 5.369 9 C -0.004 4.004 10 C 0.081 3.919 11 O -0.359 6.359 12 C -0.160 4.160 13 C 0.065 3.935 14 N -0.347 5.347 15 C -0.370 4.370 16 H 0.104 0.896 17 C -0.261 4.261 18 N -0.600 5.600 19 Si 0.807 3.193 20 H -0.215 1.215 21 H -0.224 1.224 22 H -0.189 1.189 23 C -0.011 4.011 24 C -0.087 4.087 25 C -0.141 4.141 26 C -0.147 4.147 27 C -0.142 4.142 28 C -0.141 4.141 29 C -0.130 4.130 30 H 0.120 0.880 31 H 0.131 0.869 32 H 0.106 0.894 33 H 0.112 0.888 34 H 0.089 0.911 35 H 0.246 0.754 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.231 0.769 39 H 0.112 0.888 40 H 0.100 0.900 41 H 0.022 0.978 42 H 0.030 0.970 43 H 0.055 0.945 44 H 0.073 0.927 45 H 0.050 0.950 46 H 0.129 0.871 47 H 0.150 0.850 48 H 0.158 0.842 49 H 0.162 0.838 50 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -10.620 19.979 -13.289 26.240 hybrid contribution -0.322 -0.650 1.206 1.407 sum -10.942 19.329 -12.083 25.285 Atomic orbital electron populations 1.24026 0.95313 1.02864 0.99529 1.22893 0.96452 0.98040 1.01359 1.20599 0.97001 0.96008 0.96802 1.20281 0.94101 0.90264 1.02825 0.86153 1.20841 0.82217 0.81780 0.83918 1.90676 1.66095 1.62336 1.25790 1.45899 1.35089 1.46116 1.09824 1.21696 0.89267 0.93502 0.95978 1.22386 0.94053 0.86433 0.89073 1.86609 1.41544 1.30462 1.77286 1.22794 0.99064 0.95607 0.98550 1.20829 0.86667 0.95557 0.90450 1.44634 1.12849 1.57713 1.19462 1.19473 1.02050 1.19668 0.95837 0.89622 1.25697 0.96909 1.00683 1.02796 1.70204 1.10394 1.38092 1.41338 0.85052 0.77177 0.78475 0.78589 1.21506 1.22370 1.18865 1.22323 0.93787 0.93091 0.91877 1.19423 0.99412 0.94470 0.95399 1.21155 0.97706 0.96614 0.98621 1.21367 0.99833 0.94384 0.99163 1.21504 0.98591 1.00570 0.93496 1.21476 0.97089 0.96169 0.99416 1.21344 0.99827 0.94582 0.97214 0.88050 0.86880 0.89380 0.88839 0.91147 0.75424 0.90736 0.90898 0.76922 0.88846 0.90024 0.97784 0.96980 0.94466 0.92699 0.94975 0.87082 0.84985 0.84187 0.83774 0.83667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.75 14.32 67.79 0.97 -1.78 16 2 C -0.17 -3.20 8.98 25.66 0.23 -2.97 16 3 C -0.07 -1.16 4.56 29.85 0.14 -1.02 16 4 C -0.05 -0.92 2.35 -12.28 -0.03 -0.95 16 5 H 0.12 1.54 7.87 -2.39 -0.02 1.53 16 6 C 0.53 12.33 5.92 87.66 0.52 12.85 16 7 O -0.57 -17.50 15.74 -3.02 -0.05 -17.54 16 8 N -0.72 -15.81 5.16 -463.07 -2.39 -18.20 16 9 C 0.12 3.23 4.90 86.38 0.42 3.65 16 10 C 0.12 3.97 0.95 -9.40 -0.01 3.96 16 11 O -0.55 -18.06 13.19 -148.98 -1.96 -20.03 16 12 C -0.12 -4.54 6.16 31.78 0.20 -4.35 16 13 C 0.19 9.63 5.38 86.73 0.47 10.09 16 14 N -0.62 -31.58 3.39 -691.98 -2.35 -33.93 16 15 C -0.24 -13.43 10.27 84.03 0.86 -12.57 16 16 H 0.09 4.48 7.83 -2.91 -0.02 4.46 16 17 C -0.07 -3.89 5.48 84.86 0.47 -3.42 16 18 N -0.95 -58.17 10.35 21.65 0.22 -57.94 16 19 Si 0.98 45.75 29.56 68.60 2.03 47.78 16 20 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 21 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 22 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 23 C 0.11 4.35 5.93 86.86 0.51 4.86 16 24 C -0.09 -1.46 4.77 -19.87 -0.09 -1.56 16 25 C -0.12 -2.35 8.88 22.27 0.20 -2.15 16 26 C -0.13 -2.12 10.05 22.27 0.22 -1.90 16 27 C -0.12 -1.72 10.05 22.27 0.22 -1.50 16 28 C -0.12 -1.61 10.05 22.27 0.22 -1.38 16 29 C -0.11 -1.53 9.67 22.27 0.22 -1.32 16 30 H 0.10 1.44 8.06 -2.91 -0.02 1.42 16 31 H 0.11 1.32 7.84 -2.91 -0.02 1.30 16 32 H 0.09 2.05 7.70 -2.91 -0.02 2.03 16 33 H 0.09 1.28 7.79 -2.39 -0.02 1.26 16 34 H 0.07 1.47 7.09 -2.39 -0.02 1.45 16 35 H 0.41 7.25 7.30 -92.71 -0.68 6.58 16 36 H 0.07 2.10 8.11 -2.38 -0.02 2.08 16 37 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.38 9.08 8.16 -74.05 -0.60 8.48 16 39 H 0.09 3.10 8.01 -2.39 -0.02 3.08 16 40 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 41 H 0.00 0.23 7.54 -2.39 -0.02 0.21 16 42 H 0.01 0.68 7.37 -2.38 -0.02 0.66 16 43 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 44 H 0.05 1.88 7.97 -2.39 -0.02 1.86 16 45 H 0.03 1.21 8.04 -2.39 -0.02 1.20 16 46 H 0.11 2.40 7.64 -2.91 -0.02 2.37 16 47 H 0.13 1.76 8.06 -2.91 -0.02 1.73 16 48 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 49 H 0.14 1.23 8.06 -2.91 -0.02 1.20 16 50 H 0.15 1.33 7.95 -2.91 -0.02 1.30 16 Total: -1.00 -74.68 408.38 0.89 -73.79 By element: Atomic # 1 Polarization: 27.86 SS G_CDS: -0.34 Total: 27.52 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: 5.74 Total: -1.45 kcal Atomic # 7 Polarization: -105.56 SS G_CDS: -4.52 Total: -110.07 kcal Atomic # 8 Polarization: -35.56 SS G_CDS: -2.01 Total: -37.57 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -74.68 0.89 -73.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754762431.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.458 kcal (2) G-P(sol) polarization free energy of solvation -74.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds