Wall clock time and date at job start Wed Apr 1 2020 05:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 120.00458 * 2 1 4 4 C 1.53001 * 109.47301 * 119.99917 * 3 2 1 5 5 O 1.42899 * 109.47040 * 359.97438 * 3 2 1 6 6 C 1.52998 * 109.46918 * 240.00120 * 3 2 1 7 7 C 1.50702 * 109.47348 * 56.86221 * 6 3 2 8 8 O 1.21286 * 119.99663 * 6.30020 * 7 6 3 9 9 N 1.34773 * 119.99807 * 186.29410 * 7 6 3 10 10 C 1.46503 * 119.99431 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.46936 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.39874 * 64.89078 * 11 10 9 13 13 C 1.50805 * 109.43788 * 184.78192 * 11 10 9 14 14 C 1.38840 * 117.81310 * 289.08537 * 13 11 10 15 15 C 1.37948 * 120.51481 * 179.58063 * 14 13 11 16 16 C 1.38271 * 119.72309 * 359.95982 * 15 14 13 17 17 C 1.37913 * 119.81630 * 0.19128 * 16 15 14 18 18 C 1.37676 * 122.35373 * 108.98318 * 13 11 10 19 19 C 1.50603 * 122.86639 * 0.87585 * 18 13 11 20 20 C 1.53277 * 110.81549 * 340.03486 * 19 18 13 21 21 N 1.46682 * 109.43897 * 305.00346 * 11 10 9 22 22 C 1.36935 * 121.34369 * 104.16675 * 21 11 10 23 23 H 1.08001 * 119.99954 * 332.48776 * 22 21 11 24 24 C 1.38815 * 120.00001 * 152.48931 * 22 21 11 25 25 N 1.31619 * 119.99967 * 344.88334 * 24 22 21 26 26 Si 1.86794 * 119.99833 * 164.88947 * 24 22 21 27 27 H 1.48504 * 109.47045 * 179.97438 * 26 24 22 28 28 H 1.48496 * 109.47445 * 299.99549 * 26 24 22 29 29 H 1.48502 * 109.47386 * 59.99743 * 26 24 22 30 30 H 1.07997 * 120.00585 * 180.02562 * 1 2 3 31 31 H 1.08002 * 119.99694 * 0.02562 * 1 2 3 32 32 H 1.08002 * 119.99694 * 179.97438 * 2 1 3 33 33 H 1.09000 * 109.46815 * 184.47660 * 4 3 2 34 34 H 1.09005 * 109.47153 * 304.47945 * 4 3 2 35 35 H 1.08996 * 109.46768 * 64.47384 * 4 3 2 36 36 H 0.96705 * 114.00210 * 300.00554 * 5 3 2 37 37 H 1.09000 * 109.47197 * 296.86589 * 6 3 2 38 38 H 1.08998 * 109.46971 * 176.86331 * 6 3 2 39 39 H 0.96992 * 120.00297 * 0.02562 * 9 7 6 40 40 H 1.09001 * 109.47421 * 60.00899 * 10 9 7 41 41 H 1.09000 * 109.47492 * 299.99922 * 10 9 7 42 42 H 1.08006 * 119.74359 * 359.57817 * 14 13 11 43 43 H 1.08000 * 120.14476 * 179.97438 * 15 14 13 44 44 H 1.07999 * 120.09328 * 180.16967 * 16 15 14 45 45 H 1.07999 * 119.70428 * 179.97438 * 17 16 15 46 46 H 1.09002 * 109.20676 * 100.50144 * 19 18 13 47 47 H 1.08999 * 109.20135 * 219.84261 * 19 18 13 48 48 H 1.09001 * 109.89105 * 288.14150 * 20 19 18 49 49 H 1.09008 * 109.91319 * 167.17932 * 20 19 18 50 50 H 0.96991 * 119.99888 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.9432 1.3861 1.2492 5 8 1.1351 2.3912 -0.0006 6 6 2.9432 1.3860 -1.2493 7 6 2.0856 1.2289 -2.4785 8 8 0.8782 1.1828 -2.3737 9 7 2.6605 1.1399 -3.6942 10 6 1.8267 0.9877 -4.8892 11 6 2.7208 0.9105 -6.1284 12 1 3.3282 0.0067 -6.0808 13 6 1.8605 0.8723 -7.3664 14 6 1.1356 -0.2852 -7.6160 15 6 0.3240 -0.3773 -8.7277 16 6 0.2314 0.6920 -9.5995 17 6 0.9535 1.8411 -9.3543 18 6 1.7752 1.9351 -8.2374 19 6 2.5439 3.2154 -8.0424 20 6 2.9939 3.3638 -6.5847 21 7 3.5974 2.0858 -6.1720 22 6 4.9222 1.9992 -5.8366 23 1 5.2547 1.2433 -5.1405 24 6 5.8378 2.8828 -6.3913 25 7 5.5065 3.5985 -7.4451 26 14 7.5402 3.0561 -5.6424 27 1 8.3213 4.0558 -6.4144 28 1 7.4174 3.5053 -4.2323 29 1 8.2358 1.7448 -5.6853 30 1 -0.5401 -0.9352 0.0004 31 1 -0.5400 0.9354 -0.0004 32 1 1.8500 -0.9354 0.0004 33 1 3.4271 2.3619 1.2902 34 1 2.3265 1.2487 2.1375 35 1 3.7027 0.6052 1.2100 36 1 0.5440 2.4030 -0.7659 37 1 3.6877 0.5903 -1.2216 38 1 3.4456 2.3528 -1.2778 39 1 3.6261 1.1764 -3.7780 40 1 1.1573 1.8436 -4.9766 41 1 1.2389 0.0734 -4.8083 42 1 1.2076 -1.1200 -6.9345 43 1 -0.2370 -1.2807 -8.9163 44 1 -0.4043 0.6273 -10.4702 45 1 0.8801 2.6750 -10.0366 46 1 3.4198 3.2102 -8.6912 47 1 1.9072 4.0597 -8.3066 48 1 2.1348 3.5875 -5.9523 49 1 3.7308 4.1630 -6.5031 50 1 6.1463 4.2156 -7.8329 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755172729.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:44 Heat of formation + Delta-G solvation = -22.428077 kcal Electronic energy + Delta-G solvation = -31239.885991 eV Core-core repulsion = 27232.804047 eV Total energy + Delta-G solvation = -4007.081945 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -40.04919 -39.36763 -37.58309 -36.22392 -34.12569 -32.86530 -32.36816 -32.09867 -31.09995 -29.91623 -28.92009 -28.15110 -26.57654 -24.17092 -22.71256 -22.38643 -21.98897 -21.23634 -20.18044 -19.46420 -18.67623 -17.18787 -16.85623 -16.42595 -16.06992 -15.65316 -15.49641 -15.13888 -14.72024 -14.52879 -14.28627 -14.21547 -13.86043 -13.49704 -13.29220 -12.89497 -12.62692 -12.54811 -12.46441 -12.38463 -12.30371 -12.10146 -11.81728 -11.71240 -11.58956 -11.24858 -11.14831 -11.10621 -10.93446 -10.86852 -10.73881 -10.49059 -10.14854 -10.00033 -9.92759 -9.72190 -9.57467 -9.02690 -8.65255 -8.52783 -8.27674 -7.93875 -6.86288 -5.96442 -3.43556 1.84859 1.92330 2.45773 2.97037 3.26411 3.32251 3.34195 3.61898 4.27146 4.31146 4.35391 4.79865 4.85061 4.97230 5.19081 5.21393 5.33746 5.34891 5.39413 5.42518 5.43254 5.51881 5.55641 5.64236 5.76524 5.79886 5.84549 5.86985 5.95207 6.05582 6.07932 6.13524 6.21160 6.34928 6.42368 6.53020 6.56955 6.68928 6.70729 6.74101 6.88741 6.93079 6.94796 7.00478 7.31171 7.35378 7.50271 7.58254 7.64048 7.86130 7.99731 8.24323 8.62182 9.00288 9.61479 10.20874 11.10272 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008569 B = 0.004186 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3266.847372 B = 6688.144163 C = 9242.726959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.189 4.189 3 C 0.179 3.821 4 C -0.134 4.134 5 O -0.564 6.564 6 C -0.169 4.169 7 C 0.511 3.489 8 O -0.557 6.557 9 N -0.703 5.703 10 C 0.115 3.885 11 C 0.193 3.807 12 H 0.076 0.924 13 C -0.080 4.080 14 C -0.119 4.119 15 C -0.139 4.139 16 C -0.128 4.128 17 C -0.134 4.134 18 C -0.039 4.039 19 C -0.096 4.096 20 C 0.165 3.835 21 N -0.579 5.579 22 C -0.261 4.261 23 H 0.066 0.934 24 C 0.012 3.988 25 N -0.892 5.892 26 Si 0.904 3.096 27 H -0.290 1.290 28 H -0.282 1.282 29 H -0.283 1.283 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.388 0.612 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.411 0.589 40 H 0.060 0.940 41 H 0.056 0.944 42 H 0.113 0.887 43 H 0.112 0.888 44 H 0.111 0.889 45 H 0.113 0.887 46 H 0.101 0.899 47 H 0.047 0.953 48 H 0.005 0.995 49 H 0.098 0.902 50 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.364 -5.630 6.695 10.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.207 4.207 3 C 0.138 3.862 4 C -0.192 4.192 5 O -0.375 6.375 6 C -0.209 4.209 7 C 0.298 3.702 8 O -0.438 6.438 9 N -0.354 5.354 10 C -0.012 4.012 11 C 0.084 3.916 12 H 0.093 0.907 13 C -0.082 4.082 14 C -0.137 4.137 15 C -0.158 4.158 16 C -0.146 4.146 17 C -0.153 4.153 18 C -0.039 4.039 19 C -0.134 4.134 20 C 0.040 3.960 21 N -0.300 5.300 22 C -0.390 4.390 23 H 0.084 0.916 24 C -0.188 4.188 25 N -0.535 5.535 26 Si 0.734 3.266 27 H -0.216 1.216 28 H -0.209 1.209 29 H -0.209 1.209 30 H 0.109 0.891 31 H 0.120 0.880 32 H 0.124 0.876 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.241 0.759 37 H 0.116 0.884 38 H 0.122 0.878 39 H 0.248 0.752 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.132 0.868 43 H 0.130 0.870 44 H 0.129 0.871 45 H 0.131 0.869 46 H 0.119 0.881 47 H 0.066 0.934 48 H 0.023 0.977 49 H 0.115 0.885 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.747 -5.375 7.189 11.229 hybrid contribution 1.094 -0.194 -0.729 1.329 sum -5.653 -5.569 6.459 10.232 Atomic orbital electron populations 1.23611 0.95999 1.01544 0.97826 1.23267 0.96811 0.97894 1.02755 1.19756 0.88097 0.85164 0.93197 1.21707 0.98690 1.02633 0.96127 1.86390 1.51065 1.48753 1.51307 1.22430 0.99722 1.05329 0.93442 1.20497 0.88740 0.76159 0.84842 1.90559 1.14793 1.51844 1.86560 1.45960 1.11770 1.72149 1.05507 1.21876 0.93689 1.00552 0.85046 1.19610 0.90415 0.93021 0.88519 0.90653 1.20081 0.97392 0.93267 0.97419 1.21086 0.97378 0.97611 0.97666 1.20876 1.00499 0.98511 0.95871 1.20919 1.00276 0.94044 0.99369 1.21204 0.98233 0.97994 0.97825 1.19882 0.94652 0.96427 0.92988 1.21075 0.98723 0.91222 1.02380 1.20917 0.95171 0.90165 0.89792 1.44082 1.05615 1.01788 1.78508 1.18970 0.82592 1.17211 1.20192 0.91595 1.25042 0.97653 1.00497 0.95613 1.69916 1.35142 1.28027 1.20408 0.86360 0.83944 0.77628 0.78707 1.21579 1.20881 1.20888 0.89129 0.88036 0.87557 0.91579 0.91758 0.91142 0.75860 0.88391 0.87760 0.75235 0.92188 0.92561 0.86845 0.86977 0.87055 0.86899 0.88128 0.93416 0.97651 0.88451 0.93351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 12.69 29.01 0.37 -1.59 16 2 C -0.19 -2.36 7.48 -36.03 -0.27 -2.63 16 3 C 0.18 2.26 1.08 -91.77 -0.10 2.16 16 4 C -0.13 -1.39 8.83 37.16 0.33 -1.06 16 5 O -0.56 -8.27 11.93 -53.18 -0.63 -8.91 16 6 C -0.17 -2.14 4.99 -27.88 -0.14 -2.27 16 7 C 0.51 7.99 7.31 -10.99 -0.08 7.91 16 8 O -0.56 -9.70 11.98 -12.39 -0.15 -9.85 16 9 N -0.70 -11.51 5.39 -60.29 -0.32 -11.83 16 10 C 0.11 2.00 5.00 -4.04 -0.02 1.98 16 11 C 0.19 3.67 2.50 -68.93 -0.17 3.49 16 12 H 0.08 1.45 7.98 -51.93 -0.41 1.03 16 13 C -0.08 -1.49 5.17 -104.55 -0.54 -2.03 16 14 C -0.12 -1.93 9.34 -39.47 -0.37 -2.30 16 15 C -0.14 -2.08 10.05 -39.68 -0.40 -2.48 16 16 C -0.13 -1.93 10.05 -39.69 -0.40 -2.33 16 17 C -0.13 -2.27 9.59 -39.43 -0.38 -2.65 16 18 C -0.04 -0.75 5.76 -104.60 -0.60 -1.36 16 19 C -0.10 -1.96 5.77 -27.79 -0.16 -2.12 16 20 C 0.16 3.61 5.48 -3.50 -0.02 3.59 16 21 N -0.58 -12.59 2.30 -166.02 -0.38 -12.97 16 22 C -0.26 -6.13 8.75 -15.06 -0.13 -6.26 16 23 H 0.07 1.48 7.24 -52.49 -0.38 1.10 16 24 C 0.01 0.30 5.01 -17.43 -0.09 0.21 16 25 N -0.89 -22.94 9.98 55.49 0.55 -22.39 16 26 Si 0.90 19.65 29.58 -169.99 -5.03 14.62 16 27 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 28 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 29 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 30 H 0.09 1.03 8.06 -52.49 -0.42 0.60 16 31 H 0.10 1.36 6.41 -52.49 -0.34 1.02 16 32 H 0.11 1.18 8.06 -52.49 -0.42 0.76 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.39 5.88 5.67 45.56 0.26 6.14 16 37 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.10 1.31 8.14 -51.93 -0.42 0.88 16 39 H 0.41 6.79 6.66 -40.82 -0.27 6.52 16 40 H 0.06 1.16 7.53 -51.93 -0.39 0.77 16 41 H 0.06 0.94 8.03 -51.93 -0.42 0.53 16 42 H 0.11 1.62 8.05 -52.48 -0.42 1.20 16 43 H 0.11 1.37 8.06 -52.49 -0.42 0.94 16 44 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 45 H 0.11 1.71 8.05 -52.49 -0.42 1.28 16 46 H 0.10 2.35 7.12 -51.93 -0.37 1.98 16 47 H 0.05 0.88 8.11 -51.93 -0.42 0.46 16 48 H 0.01 0.12 7.46 -51.93 -0.39 -0.27 16 49 H 0.10 2.38 5.90 -51.92 -0.31 2.07 16 50 H 0.26 6.52 8.31 -40.82 -0.34 6.18 16 LS Contribution 392.79 15.07 5.92 5.92 Total: -1.00 -26.82 392.79 -10.44 -37.25 By element: Atomic # 1 Polarization: 25.10 SS G_CDS: -7.22 Total: 17.88 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: -3.17 Total: -9.72 kcal Atomic # 7 Polarization: -47.05 SS G_CDS: -0.15 Total: -47.20 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -0.78 Total: -18.75 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.03 Total: 14.62 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -26.82 -10.44 -37.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755172729.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.824 kcal (2) G-P(sol) polarization free energy of solvation -26.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds