Wall clock time and date at job start Wed Apr 1 2020 05:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 120.00458 * 2 1 4 4 C 1.53001 * 109.47301 * 119.99917 * 3 2 1 5 5 O 1.42899 * 109.47040 * 359.97438 * 3 2 1 6 6 C 1.52998 * 109.46918 * 240.00120 * 3 2 1 7 7 C 1.50702 * 109.47348 * 56.86221 * 6 3 2 8 8 O 1.21286 * 119.99663 * 6.30020 * 7 6 3 9 9 N 1.34773 * 119.99807 * 186.29410 * 7 6 3 10 10 C 1.46503 * 119.99431 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.46936 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.39874 * 64.89078 * 11 10 9 13 13 C 1.50805 * 109.43788 * 184.78192 * 11 10 9 14 14 C 1.38840 * 117.81310 * 289.08537 * 13 11 10 15 15 C 1.37948 * 120.51481 * 179.58063 * 14 13 11 16 16 C 1.38271 * 119.72309 * 359.95982 * 15 14 13 17 17 C 1.37913 * 119.81630 * 0.19128 * 16 15 14 18 18 C 1.37676 * 122.35373 * 108.98318 * 13 11 10 19 19 C 1.50603 * 122.86639 * 0.87585 * 18 13 11 20 20 C 1.53277 * 110.81549 * 340.03486 * 19 18 13 21 21 N 1.46682 * 109.43897 * 305.00346 * 11 10 9 22 22 C 1.36935 * 121.34369 * 104.16675 * 21 11 10 23 23 H 1.08001 * 119.99954 * 332.48776 * 22 21 11 24 24 C 1.38815 * 120.00001 * 152.48931 * 22 21 11 25 25 N 1.31619 * 119.99967 * 344.88334 * 24 22 21 26 26 Si 1.86794 * 119.99833 * 164.88947 * 24 22 21 27 27 H 1.48504 * 109.47045 * 179.97438 * 26 24 22 28 28 H 1.48496 * 109.47445 * 299.99549 * 26 24 22 29 29 H 1.48502 * 109.47386 * 59.99743 * 26 24 22 30 30 H 1.07997 * 120.00585 * 180.02562 * 1 2 3 31 31 H 1.08002 * 119.99694 * 0.02562 * 1 2 3 32 32 H 1.08002 * 119.99694 * 179.97438 * 2 1 3 33 33 H 1.09000 * 109.46815 * 184.47660 * 4 3 2 34 34 H 1.09005 * 109.47153 * 304.47945 * 4 3 2 35 35 H 1.08996 * 109.46768 * 64.47384 * 4 3 2 36 36 H 0.96705 * 114.00210 * 300.00554 * 5 3 2 37 37 H 1.09000 * 109.47197 * 296.86589 * 6 3 2 38 38 H 1.08998 * 109.46971 * 176.86331 * 6 3 2 39 39 H 0.96992 * 120.00297 * 0.02562 * 9 7 6 40 40 H 1.09001 * 109.47421 * 60.00899 * 10 9 7 41 41 H 1.09000 * 109.47492 * 299.99922 * 10 9 7 42 42 H 1.08006 * 119.74359 * 359.57817 * 14 13 11 43 43 H 1.08000 * 120.14476 * 179.97438 * 15 14 13 44 44 H 1.07999 * 120.09328 * 180.16967 * 16 15 14 45 45 H 1.07999 * 119.70428 * 179.97438 * 17 16 15 46 46 H 1.09002 * 109.20676 * 100.50144 * 19 18 13 47 47 H 1.08999 * 109.20135 * 219.84261 * 19 18 13 48 48 H 1.09001 * 109.89105 * 288.14150 * 20 19 18 49 49 H 1.09008 * 109.91319 * 167.17932 * 20 19 18 50 50 H 0.96991 * 119.99888 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.9432 1.3861 1.2492 5 8 1.1351 2.3912 -0.0006 6 6 2.9432 1.3860 -1.2493 7 6 2.0856 1.2289 -2.4785 8 8 0.8782 1.1828 -2.3737 9 7 2.6605 1.1399 -3.6942 10 6 1.8267 0.9877 -4.8892 11 6 2.7208 0.9105 -6.1284 12 1 3.3282 0.0067 -6.0808 13 6 1.8605 0.8723 -7.3664 14 6 1.1356 -0.2852 -7.6160 15 6 0.3240 -0.3773 -8.7277 16 6 0.2314 0.6920 -9.5995 17 6 0.9535 1.8411 -9.3543 18 6 1.7752 1.9351 -8.2374 19 6 2.5439 3.2154 -8.0424 20 6 2.9939 3.3638 -6.5847 21 7 3.5974 2.0858 -6.1720 22 6 4.9222 1.9992 -5.8366 23 1 5.2547 1.2433 -5.1405 24 6 5.8378 2.8828 -6.3913 25 7 5.5065 3.5985 -7.4451 26 14 7.5402 3.0561 -5.6424 27 1 8.3213 4.0558 -6.4144 28 1 7.4174 3.5053 -4.2323 29 1 8.2358 1.7448 -5.6853 30 1 -0.5401 -0.9352 0.0004 31 1 -0.5400 0.9354 -0.0004 32 1 1.8500 -0.9354 0.0004 33 1 3.4271 2.3619 1.2902 34 1 2.3265 1.2487 2.1375 35 1 3.7027 0.6052 1.2100 36 1 0.5440 2.4030 -0.7659 37 1 3.6877 0.5903 -1.2216 38 1 3.4456 2.3528 -1.2778 39 1 3.6261 1.1764 -3.7780 40 1 1.1573 1.8436 -4.9766 41 1 1.2389 0.0734 -4.8083 42 1 1.2076 -1.1200 -6.9345 43 1 -0.2370 -1.2807 -8.9163 44 1 -0.4043 0.6273 -10.4702 45 1 0.8801 2.6750 -10.0366 46 1 3.4198 3.2102 -8.6912 47 1 1.9072 4.0597 -8.3066 48 1 2.1348 3.5875 -5.9523 49 1 3.7308 4.1630 -6.5031 50 1 6.1463 4.2156 -7.8329 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755172729.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:43 Heat of formation + Delta-G solvation = -36.100063 kcal Electronic energy + Delta-G solvation = -31240.478853 eV Core-core repulsion = 27232.804047 eV Total energy + Delta-G solvation = -4007.674807 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.29450 -40.69053 -38.73892 -37.69545 -35.58386 -34.03948 -33.90102 -33.45103 -32.11354 -31.50189 -30.19707 -29.39154 -27.99285 -25.76472 -24.17392 -23.68208 -23.21766 -22.60330 -21.43562 -20.50020 -20.18362 -18.70095 -18.04352 -17.67332 -17.38739 -17.10849 -16.85504 -16.45649 -16.01138 -15.86396 -15.72781 -15.45075 -15.22341 -15.03385 -14.55667 -14.25535 -13.93678 -13.90512 -13.77619 -13.55846 -13.28888 -13.26597 -13.04308 -12.93363 -12.80549 -12.74663 -12.65892 -12.56634 -12.50836 -12.23090 -12.10068 -11.93101 -11.78637 -11.55080 -11.24064 -11.03161 -10.87362 -10.46389 -10.09676 -9.85140 -9.56626 -9.30976 -8.64209 -7.81449 -5.29423 0.56842 0.61779 1.48662 1.53213 1.55285 1.59826 1.73584 2.37073 2.53397 2.97516 3.35538 3.36294 3.57693 3.75941 3.87753 3.93363 4.01637 4.07939 4.16698 4.30903 4.35589 4.38642 4.43610 4.45777 4.58853 4.63597 4.69344 4.73254 4.78002 4.81543 4.88961 4.96618 4.98364 4.99500 5.12208 5.15977 5.24251 5.25808 5.29836 5.54451 5.57456 5.63586 5.69105 5.70309 5.73736 5.85379 5.96749 6.00302 6.25871 6.41700 6.69712 6.74236 7.15655 7.36160 7.82880 8.41198 9.23540 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008569 B = 0.004186 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3266.847372 B = 6688.144163 C = 9242.726959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.190 4.190 3 C 0.171 3.829 4 C -0.132 4.132 5 O -0.577 6.577 6 C -0.163 4.163 7 C 0.508 3.492 8 O -0.575 6.575 9 N -0.706 5.706 10 C 0.131 3.869 11 C 0.197 3.803 12 H 0.074 0.926 13 C -0.102 4.102 14 C -0.123 4.123 15 C -0.132 4.132 16 C -0.124 4.124 17 C -0.143 4.143 18 C -0.072 4.072 19 C -0.084 4.084 20 C 0.171 3.829 21 N -0.588 5.588 22 C -0.258 4.258 23 H 0.079 0.921 24 C -0.039 4.039 25 N -0.919 5.919 26 Si 0.961 3.039 27 H -0.304 1.304 28 H -0.276 1.276 29 H -0.278 1.278 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.124 0.876 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.095 0.905 36 H 0.382 0.618 37 H 0.126 0.874 38 H 0.106 0.894 39 H 0.410 0.590 40 H 0.036 0.964 41 H 0.067 0.933 42 H 0.133 0.867 43 H 0.148 0.852 44 H 0.145 0.855 45 H 0.124 0.876 46 H 0.067 0.933 47 H 0.057 0.943 48 H 0.004 0.996 49 H 0.068 0.932 50 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.877 -7.977 7.219 12.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.208 4.208 3 C 0.130 3.870 4 C -0.189 4.189 5 O -0.388 6.388 6 C -0.203 4.203 7 C 0.296 3.704 8 O -0.457 6.457 9 N -0.356 5.356 10 C 0.004 3.996 11 C 0.089 3.911 12 H 0.092 0.908 13 C -0.104 4.104 14 C -0.142 4.142 15 C -0.150 4.150 16 C -0.141 4.141 17 C -0.161 4.161 18 C -0.072 4.072 19 C -0.122 4.122 20 C 0.046 3.954 21 N -0.309 5.309 22 C -0.387 4.387 23 H 0.096 0.904 24 C -0.236 4.236 25 N -0.564 5.564 26 Si 0.790 3.210 27 H -0.231 1.231 28 H -0.202 1.202 29 H -0.204 1.204 30 H 0.121 0.879 31 H 0.106 0.894 32 H 0.142 0.858 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.113 0.887 36 H 0.235 0.765 37 H 0.144 0.856 38 H 0.124 0.876 39 H 0.247 0.753 40 H 0.055 0.945 41 H 0.085 0.915 42 H 0.151 0.849 43 H 0.166 0.834 44 H 0.163 0.837 45 H 0.142 0.858 46 H 0.085 0.915 47 H 0.076 0.924 48 H 0.022 0.978 49 H 0.086 0.914 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -7.270 -7.745 7.742 13.144 hybrid contribution 1.147 0.482 -0.909 1.541 sum -6.123 -7.263 6.834 11.702 Atomic orbital electron populations 1.23686 0.96424 1.01590 0.98577 1.23455 0.96822 0.98480 1.02062 1.20046 0.88046 0.84758 0.94187 1.21739 0.98779 1.03578 0.94788 1.86390 1.51459 1.49898 1.51070 1.22461 0.99690 1.06434 0.91683 1.21046 0.88844 0.75267 0.85274 1.90557 1.15838 1.52490 1.86834 1.45979 1.11566 1.72525 1.05554 1.21588 0.93107 0.99907 0.84970 1.19640 0.90245 0.91575 0.89593 0.90815 1.20141 0.98570 0.94372 0.97314 1.21325 0.97060 0.97112 0.98677 1.21326 0.99427 0.99612 0.94629 1.21327 0.99549 0.93033 1.00237 1.21393 0.98013 0.99435 0.97222 1.19882 0.96329 0.96066 0.94902 1.20814 0.97861 0.93069 1.00469 1.20708 0.94090 0.89753 0.90892 1.44139 1.05524 1.02605 1.78601 1.19337 0.83245 1.16629 1.19522 0.90362 1.25696 1.00561 1.01071 0.96246 1.70092 1.35611 1.28906 1.21791 0.85451 0.80515 0.77077 0.77939 1.23128 1.20158 1.20422 0.87879 0.89364 0.85770 0.91629 0.91769 0.88663 0.76510 0.85629 0.87583 0.75278 0.94541 0.91498 0.84891 0.83421 0.83683 0.85803 0.91513 0.92446 0.97847 0.91364 0.94367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.09 12.69 67.78 0.86 -3.23 16 2 C -0.19 -4.40 7.48 25.65 0.19 -4.21 16 3 C 0.17 4.03 1.08 -11.54 -0.01 4.02 16 4 C -0.13 -2.41 8.83 71.98 0.64 -1.78 16 5 O -0.58 -16.77 11.93 -131.82 -1.57 -18.34 16 6 C -0.16 -3.81 4.99 29.85 0.15 -3.66 16 7 C 0.51 15.37 7.31 87.66 0.64 16.01 16 8 O -0.58 -19.78 11.98 14.11 0.17 -19.61 16 9 N -0.71 -22.58 5.39 -463.04 -2.49 -25.07 16 10 C 0.13 4.53 5.00 86.38 0.43 4.96 16 11 C 0.20 7.46 2.50 44.24 0.11 7.57 16 12 H 0.07 2.78 7.98 -2.39 -0.02 2.76 16 13 C -0.10 -3.76 5.17 -19.82 -0.10 -3.86 16 14 C -0.12 -3.72 9.34 22.34 0.21 -3.51 16 15 C -0.13 -3.45 10.05 22.21 0.22 -3.23 16 16 C -0.12 -3.33 10.05 22.20 0.22 -3.11 16 17 C -0.14 -4.63 9.59 22.37 0.21 -4.42 16 18 C -0.07 -2.76 5.76 -19.85 -0.11 -2.88 16 19 C -0.08 -3.57 5.77 29.91 0.17 -3.40 16 20 C 0.17 7.83 5.48 86.33 0.47 8.30 16 21 N -0.59 -26.04 2.30 -679.17 -1.56 -27.60 16 22 C -0.26 -12.21 8.75 84.03 0.74 -11.48 16 23 H 0.08 3.44 7.24 -2.91 -0.02 3.42 16 24 C -0.04 -1.95 5.01 84.86 0.43 -1.52 16 25 N -0.92 -49.21 9.98 21.65 0.22 -49.00 16 26 Si 0.96 40.89 29.58 68.60 2.03 42.92 16 27 H -0.30 -13.57 7.11 99.48 0.71 -12.86 16 28 H -0.28 -11.29 7.11 99.48 0.71 -10.58 16 29 H -0.28 -11.52 7.11 99.48 0.71 -10.82 16 30 H 0.10 2.21 8.06 -2.91 -0.02 2.18 16 31 H 0.09 2.39 6.41 -2.91 -0.02 2.37 16 32 H 0.12 2.41 8.06 -2.91 -0.02 2.38 16 33 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 35 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.38 11.77 5.67 -74.05 -0.42 11.35 16 37 H 0.13 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 39 H 0.41 13.19 6.66 -92.71 -0.62 12.57 16 40 H 0.04 1.43 7.53 -2.39 -0.02 1.41 16 41 H 0.07 2.16 8.03 -2.39 -0.02 2.15 16 42 H 0.13 3.41 8.05 -2.91 -0.02 3.38 16 43 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 44 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 45 H 0.12 3.62 8.05 -2.91 -0.02 3.60 16 46 H 0.07 3.29 7.12 -2.39 -0.02 3.27 16 47 H 0.06 2.23 8.11 -2.39 -0.02 2.21 16 48 H 0.00 0.16 7.46 -2.39 -0.02 0.14 16 49 H 0.07 3.52 5.90 -2.38 -0.01 3.51 16 50 H 0.25 13.16 8.31 -92.71 -0.77 12.39 16 Total: -1.00 -59.48 392.79 2.17 -57.31 By element: Atomic # 1 Polarization: 48.90 SS G_CDS: -0.09 Total: 48.81 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: 5.47 Total: -9.42 kcal Atomic # 7 Polarization: -97.83 SS G_CDS: -3.84 Total: -101.67 kcal Atomic # 8 Polarization: -36.55 SS G_CDS: -1.40 Total: -37.95 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.92 kcal Total: -59.48 2.17 -57.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755172729.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.210 kcal (2) G-P(sol) polarization free energy of solvation -59.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds