Wall clock time and date at job start Wed Apr 1 2020 03:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47031 * 2 1 4 4 N 1.46903 * 109.47242 * 179.97438 * 3 2 1 5 5 C 1.46893 * 111.00127 * 169.99827 * 4 3 2 6 6 C 1.53240 * 109.34052 * 187.25095 * 5 4 3 7 7 N 1.47073 * 108.52322 * 306.17131 * 6 5 4 8 8 C 1.34773 * 120.88399 * 231.18536 * 7 6 5 9 9 O 1.21726 * 120.00115 * 5.34183 * 8 7 6 10 10 C 1.46260 * 120.00060 * 185.34664 * 8 7 6 11 11 C 1.35020 * 119.99699 * 175.03224 * 10 8 7 12 12 C 1.46968 * 120.00031 * 179.97438 * 11 10 8 13 13 C 1.40017 * 120.09474 * 359.72454 * 12 11 10 14 14 C 1.37602 * 119.89302 * 179.71526 * 13 12 11 15 15 C 1.39178 * 120.10209 * 0.58353 * 14 13 12 16 16 O 1.35570 * 119.89971 * 179.69733 * 15 14 13 17 17 C 1.34784 * 117.00071 * 185.31268 * 16 15 14 18 18 H 1.08000 * 119.99667 * 354.96096 * 17 16 15 19 19 C 1.38719 * 120.00111 * 174.96108 * 17 16 15 20 20 N 1.31512 * 119.99797 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00059 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47113 * 89.99985 * 21 19 17 23 23 H 1.48500 * 109.47293 * 210.00316 * 21 19 17 24 24 H 1.48501 * 109.47167 * 330.00243 * 21 19 17 25 25 C 1.39174 * 120.20090 * 359.66953 * 15 14 13 26 26 C 1.37602 * 120.10172 * 0.04873 * 25 15 14 27 27 C 1.47079 * 118.23611 * 51.45602 * 7 6 5 28 28 C 1.46901 * 110.99749 * 294.30074 * 4 3 2 29 29 H 1.08995 * 109.46932 * 300.00354 * 1 2 3 30 30 H 1.09001 * 109.46570 * 60.00720 * 1 2 3 31 31 H 1.09000 * 109.46982 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47384 * 239.99896 * 2 1 3 33 33 H 1.09001 * 109.46570 * 119.99280 * 2 1 3 34 34 H 1.09005 * 109.47499 * 59.99865 * 3 2 1 35 35 H 1.09000 * 109.47004 * 299.99635 * 3 2 1 36 36 H 1.09002 * 109.49367 * 67.29483 * 5 4 3 37 37 H 1.09003 * 109.49436 * 307.21419 * 5 4 3 38 38 H 1.08995 * 109.63178 * 186.45599 * 6 5 4 39 39 H 1.09008 * 109.62445 * 65.88193 * 6 5 4 40 40 H 1.07995 * 119.99855 * 354.74679 * 10 8 7 41 41 H 1.08006 * 120.00273 * 359.97438 * 11 10 8 42 42 H 1.08003 * 120.05670 * 359.97438 * 13 12 11 43 43 H 1.08007 * 119.95136 * 180.27503 * 14 13 12 44 44 H 0.96996 * 119.99662 * 180.02562 * 20 19 17 45 45 H 1.08001 * 119.95117 * 180.02562 * 25 15 14 46 46 H 1.07998 * 120.05016 * 180.02562 * 26 25 15 47 47 H 1.09004 * 109.63067 * 68.25318 * 27 7 6 48 48 H 1.09001 * 109.63064 * 188.83407 * 27 7 6 49 49 H 1.09000 * 109.49206 * 292.70037 * 28 4 3 50 50 H 1.09002 * 109.49249 * 52.78493 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0355 2.7930 -0.2375 6 6 5.5566 2.7217 -0.4096 7 7 6.1266 2.0285 0.7556 8 6 7.1449 2.5701 1.4528 9 8 7.5407 3.6890 1.1821 10 6 7.7744 1.8136 2.5347 11 6 8.8578 2.3136 3.1665 12 6 9.4901 1.5537 4.2541 13 6 8.9672 0.3137 4.6404 14 6 9.5659 -0.3970 5.6552 15 6 10.6824 0.1206 6.3054 16 8 11.2654 -0.5803 7.3088 17 6 12.2730 0.0221 7.9709 18 1 12.6358 0.9848 7.6421 19 6 12.8441 -0.5942 9.0747 20 7 12.4025 -1.7666 9.4748 21 14 14.2410 0.2404 9.9919 22 1 13.6837 1.0969 11.0695 23 1 15.1278 -0.7909 10.5879 24 1 15.0221 1.0789 9.0474 25 6 11.2024 1.3552 5.9283 26 6 10.6137 2.0702 4.9107 27 6 5.5600 0.7257 1.1360 28 6 4.0349 0.8783 1.2509 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5137 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 1.6767 1.9564 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.7953 3.4322 0.6121 37 1 3.5861 3.2045 -1.1413 38 1 5.9657 3.7300 -0.4721 39 1 5.7967 2.1692 -1.3181 40 1 7.3699 0.8572 2.8313 41 1 9.2599 3.2720 2.8728 42 1 8.0977 -0.0864 4.1400 43 1 9.1660 -1.3557 5.9510 44 1 12.8016 -2.1974 10.2468 45 1 12.0692 1.7528 6.4353 46 1 11.0182 3.0280 4.6185 47 1 5.8005 -0.0150 0.3734 48 1 5.9713 0.4137 2.0960 49 1 3.7947 1.5442 2.0797 50 1 3.5850 -0.0988 1.4265 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068240297.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:45 Heat of formation + Delta-G solvation = -14.137876 kcal Electronic energy + Delta-G solvation = -28563.998515 eV Core-core repulsion = 24557.276060 eV Total energy + Delta-G solvation = -4006.722455 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.27546 -39.20173 -38.39661 -36.89680 -35.52195 -33.40654 -33.01996 -32.32793 -31.38506 -30.44191 -28.74963 -27.78910 -25.74726 -25.04923 -24.23615 -23.19955 -22.20606 -21.52931 -21.11183 -19.99738 -18.67089 -18.04754 -17.48676 -17.04923 -16.14661 -15.80101 -15.63407 -15.29447 -15.15192 -14.85459 -14.77848 -14.57218 -14.38924 -13.95962 -13.83479 -13.57565 -13.44828 -13.15952 -13.04940 -12.79896 -12.57594 -12.29244 -12.19159 -12.04202 -11.84565 -11.77322 -11.73652 -11.56277 -11.35038 -11.25623 -11.13527 -11.07073 -10.84827 -10.67942 -10.54564 -9.70654 -9.60599 -9.51203 -8.99173 -8.86546 -8.55025 -8.39439 -7.12385 -6.66152 -4.20998 1.06058 2.12346 2.54221 2.91511 3.03431 3.04223 3.08919 3.45047 3.57091 3.81511 4.41625 4.46494 4.49967 4.59681 4.67053 4.83556 4.90013 4.91360 4.93759 4.95085 5.03176 5.05674 5.15674 5.21355 5.21973 5.32191 5.34086 5.44704 5.47717 5.52435 5.58190 5.63779 5.66512 5.67442 5.74040 5.79772 5.87053 6.00013 6.11240 6.28132 6.45486 6.51681 6.59005 6.64751 6.65450 6.78076 6.90913 7.11867 7.22541 7.26664 7.42937 7.62721 7.79227 8.29166 8.78676 9.45483 10.50461 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.019824 B = 0.001694 C = 0.001579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.102620 B =16520.929155 C =17727.978725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C 0.055 3.945 4 N -0.539 5.539 5 C 0.042 3.958 6 C 0.118 3.882 7 N -0.618 5.618 8 C 0.559 3.441 9 O -0.560 6.560 10 C -0.286 4.286 11 C 0.039 3.961 12 C -0.199 4.199 13 C -0.043 4.043 14 C -0.199 4.199 15 C 0.167 3.833 16 O -0.162 6.162 17 C -0.393 4.393 18 H 0.097 0.903 19 C 0.042 3.958 20 N -0.852 5.852 21 Si 0.945 3.055 22 H -0.271 1.271 23 H -0.275 1.275 24 H -0.265 1.265 25 C -0.242 4.242 26 C -0.034 4.034 27 C 0.113 3.887 28 C 0.037 3.963 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.033 0.967 35 H 0.074 0.926 36 H 0.038 0.962 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.072 0.928 40 H 0.126 0.874 41 H 0.122 0.878 42 H 0.117 0.883 43 H 0.121 0.879 44 H 0.274 0.726 45 H 0.131 0.869 46 H 0.114 0.886 47 H 0.075 0.925 48 H 0.095 0.905 49 H 0.040 0.960 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.211 4.253 -16.949 25.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.073 4.073 4 N -0.264 5.264 5 C -0.086 4.086 6 C -0.005 4.005 7 N -0.352 5.352 8 C 0.353 3.647 9 O -0.441 6.441 10 C -0.306 4.306 11 C 0.020 3.980 12 C -0.200 4.200 13 C -0.061 4.061 14 C -0.218 4.218 15 C 0.110 3.890 16 O -0.063 6.063 17 C -0.469 4.469 18 H 0.115 0.885 19 C -0.164 4.164 20 N -0.484 5.484 21 Si 0.769 3.231 22 H -0.196 1.196 23 H -0.200 1.200 24 H -0.189 1.189 25 C -0.261 4.261 26 C -0.053 4.053 27 C -0.011 4.011 28 C -0.092 4.092 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.051 0.949 35 H 0.093 0.907 36 H 0.056 0.944 37 H 0.103 0.897 38 H 0.113 0.887 39 H 0.090 0.910 40 H 0.143 0.857 41 H 0.140 0.860 42 H 0.135 0.865 43 H 0.139 0.861 44 H 0.084 0.916 45 H 0.149 0.851 46 H 0.132 0.868 47 H 0.094 0.906 48 H 0.113 0.887 49 H 0.058 0.942 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -17.809 4.119 -17.162 25.073 hybrid contribution 0.294 0.815 1.139 1.431 sum -17.515 4.935 -16.022 24.246 Atomic orbital electron populations 1.21739 0.95582 1.01888 1.01747 1.21554 0.95417 0.96213 1.02809 1.22163 0.86785 0.97476 1.00846 1.61959 1.07573 1.21901 1.34945 1.22486 0.95597 0.89274 1.01271 1.21606 0.91551 0.99109 0.88237 1.47971 1.35285 1.21266 1.30649 1.18421 0.78781 0.85639 0.81838 1.90759 1.64030 1.19746 1.69515 1.22509 1.02603 1.03081 1.02435 1.22301 0.90714 0.96130 0.88886 1.18458 1.01336 0.97773 1.02419 1.20857 0.97466 0.93099 0.94680 1.20146 0.98086 1.02434 1.01172 1.19612 0.90855 0.90006 0.88495 1.83903 1.43865 1.39862 1.38672 1.21481 1.10457 1.04881 1.10067 0.88530 1.25394 0.98948 0.95994 0.96108 1.70014 1.40070 1.13910 1.24443 0.85645 0.79290 0.78714 0.79475 1.19629 1.20046 1.18947 1.21103 1.04821 0.97395 1.02812 1.20988 0.93245 0.97710 0.93347 1.21973 0.92022 0.85080 1.01986 1.22662 0.95365 1.00721 0.90458 0.92863 0.92705 0.92429 0.91030 0.91834 0.94900 0.90736 0.94376 0.89692 0.88697 0.91012 0.85664 0.85979 0.86533 0.86113 0.91593 0.85110 0.86810 0.90623 0.88692 0.94205 0.89186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.91 37.16 0.37 -0.39 16 2 C -0.12 -0.71 5.87 -26.73 -0.16 -0.87 16 3 C 0.05 0.36 4.96 -3.82 -0.02 0.35 16 4 N -0.54 -4.32 4.63 -234.02 -1.08 -5.41 16 5 C 0.04 0.35 5.62 -3.70 -0.02 0.33 16 6 C 0.12 1.19 6.61 -3.60 -0.02 1.17 16 7 N -0.62 -7.18 3.00 -173.88 -0.52 -7.70 16 8 C 0.56 8.21 7.62 -13.04 -0.10 8.11 16 9 O -0.56 -10.00 15.70 5.17 0.08 -9.92 16 10 C -0.29 -3.99 8.72 -37.50 -0.33 -4.32 16 11 C 0.04 0.61 9.45 -37.19 -0.35 0.25 16 12 C -0.20 -3.38 5.87 -105.03 -0.62 -4.00 16 13 C -0.04 -0.72 9.40 -39.15 -0.37 -1.09 16 14 C -0.20 -3.94 9.97 -39.46 -0.39 -4.34 16 15 C 0.17 3.81 6.66 -38.89 -0.26 3.55 16 16 O -0.16 -4.38 9.74 0.73 0.01 -4.37 16 17 C -0.39 -10.41 9.48 30.91 0.29 -10.12 16 18 H 0.10 2.35 5.18 -52.49 -0.27 2.08 16 19 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 20 N -0.85 -23.73 13.67 55.48 0.76 -22.97 16 21 Si 0.94 19.46 29.55 -169.99 -5.02 14.43 16 22 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 23 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 24 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 25 C -0.24 -4.99 9.14 -39.47 -0.36 -5.35 16 26 C -0.03 -0.61 9.78 -39.15 -0.38 -1.00 16 27 C 0.11 1.01 6.50 -3.36 -0.02 0.99 16 28 C 0.04 0.29 5.48 -3.46 -0.02 0.27 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.38 6.40 -51.93 -0.33 0.05 16 34 H 0.03 0.23 8.12 -51.93 -0.42 -0.19 16 35 H 0.07 0.45 7.97 -51.93 -0.41 0.04 16 36 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.08 0.57 7.99 -51.93 -0.41 0.16 16 38 H 0.09 1.07 7.04 -51.93 -0.37 0.71 16 39 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 40 H 0.13 1.50 3.95 -52.49 -0.21 1.29 16 41 H 0.12 1.87 7.53 -52.48 -0.40 1.48 16 42 H 0.12 1.59 6.16 -52.48 -0.32 1.26 16 43 H 0.12 2.27 8.06 -52.48 -0.42 1.85 16 44 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 45 H 0.13 2.67 5.61 -52.49 -0.29 2.38 16 46 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 47 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.09 0.79 5.46 -51.93 -0.28 0.51 16 49 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 50 H 0.09 0.59 6.16 -51.93 -0.32 0.27 16 LS Contribution 401.30 15.07 6.05 6.05 Total: -1.00 -30.71 401.30 -10.00 -40.71 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -7.41 Total: 4.62 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: -2.86 Total: -15.44 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: -0.85 Total: -36.08 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: 0.09 Total: -14.29 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.02 Total: 14.43 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -30.71 -10.00 -40.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068240297.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.570 kcal (2) G-P(sol) polarization free energy of solvation -30.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds