Wall clock time and date at job start Wed Apr 1 2020 03:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47031 * 2 1 4 4 N 1.46903 * 109.47242 * 179.97438 * 3 2 1 5 5 C 1.46893 * 111.00127 * 169.99827 * 4 3 2 6 6 C 1.53240 * 109.34052 * 187.25095 * 5 4 3 7 7 N 1.47073 * 108.52322 * 306.17131 * 6 5 4 8 8 C 1.34773 * 120.88399 * 231.18536 * 7 6 5 9 9 O 1.21726 * 120.00115 * 5.34183 * 8 7 6 10 10 C 1.46260 * 120.00060 * 185.34664 * 8 7 6 11 11 C 1.35020 * 119.99699 * 175.03224 * 10 8 7 12 12 C 1.46968 * 120.00031 * 179.97438 * 11 10 8 13 13 C 1.40017 * 120.09474 * 359.72454 * 12 11 10 14 14 C 1.37602 * 119.89302 * 179.71526 * 13 12 11 15 15 C 1.39178 * 120.10209 * 0.58353 * 14 13 12 16 16 O 1.35570 * 119.89971 * 179.69733 * 15 14 13 17 17 C 1.34784 * 117.00071 * 185.31268 * 16 15 14 18 18 H 1.08000 * 119.99667 * 354.96096 * 17 16 15 19 19 C 1.38719 * 120.00111 * 174.96108 * 17 16 15 20 20 N 1.31512 * 119.99797 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00059 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47113 * 89.99985 * 21 19 17 23 23 H 1.48500 * 109.47293 * 210.00316 * 21 19 17 24 24 H 1.48501 * 109.47167 * 330.00243 * 21 19 17 25 25 C 1.39174 * 120.20090 * 359.66953 * 15 14 13 26 26 C 1.37602 * 120.10172 * 0.04873 * 25 15 14 27 27 C 1.47079 * 118.23611 * 51.45602 * 7 6 5 28 28 C 1.46901 * 110.99749 * 294.30074 * 4 3 2 29 29 H 1.08995 * 109.46932 * 300.00354 * 1 2 3 30 30 H 1.09001 * 109.46570 * 60.00720 * 1 2 3 31 31 H 1.09000 * 109.46982 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47384 * 239.99896 * 2 1 3 33 33 H 1.09001 * 109.46570 * 119.99280 * 2 1 3 34 34 H 1.09005 * 109.47499 * 59.99865 * 3 2 1 35 35 H 1.09000 * 109.47004 * 299.99635 * 3 2 1 36 36 H 1.09002 * 109.49367 * 67.29483 * 5 4 3 37 37 H 1.09003 * 109.49436 * 307.21419 * 5 4 3 38 38 H 1.08995 * 109.63178 * 186.45599 * 6 5 4 39 39 H 1.09008 * 109.62445 * 65.88193 * 6 5 4 40 40 H 1.07995 * 119.99855 * 354.74679 * 10 8 7 41 41 H 1.08006 * 120.00273 * 359.97438 * 11 10 8 42 42 H 1.08003 * 120.05670 * 359.97438 * 13 12 11 43 43 H 1.08007 * 119.95136 * 180.27503 * 14 13 12 44 44 H 0.96996 * 119.99662 * 180.02562 * 20 19 17 45 45 H 1.08001 * 119.95117 * 180.02562 * 25 15 14 46 46 H 1.07998 * 120.05016 * 180.02562 * 26 25 15 47 47 H 1.09004 * 109.63067 * 68.25318 * 27 7 6 48 48 H 1.09001 * 109.63064 * 188.83407 * 27 7 6 49 49 H 1.09000 * 109.49206 * 292.70037 * 28 4 3 50 50 H 1.09002 * 109.49249 * 52.78493 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0355 2.7930 -0.2375 6 6 5.5566 2.7217 -0.4096 7 7 6.1266 2.0285 0.7556 8 6 7.1449 2.5701 1.4528 9 8 7.5407 3.6890 1.1821 10 6 7.7744 1.8136 2.5347 11 6 8.8578 2.3136 3.1665 12 6 9.4901 1.5537 4.2541 13 6 8.9672 0.3137 4.6404 14 6 9.5659 -0.3970 5.6552 15 6 10.6824 0.1206 6.3054 16 8 11.2654 -0.5803 7.3088 17 6 12.2730 0.0221 7.9709 18 1 12.6358 0.9848 7.6421 19 6 12.8441 -0.5942 9.0747 20 7 12.4025 -1.7666 9.4748 21 14 14.2410 0.2404 9.9919 22 1 13.6837 1.0969 11.0695 23 1 15.1278 -0.7909 10.5879 24 1 15.0221 1.0789 9.0474 25 6 11.2024 1.3552 5.9283 26 6 10.6137 2.0702 4.9107 27 6 5.5600 0.7257 1.1360 28 6 4.0349 0.8783 1.2509 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5137 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 1.6767 1.9564 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.7953 3.4322 0.6121 37 1 3.5861 3.2045 -1.1413 38 1 5.9657 3.7300 -0.4721 39 1 5.7967 2.1692 -1.3181 40 1 7.3699 0.8572 2.8313 41 1 9.2599 3.2720 2.8728 42 1 8.0977 -0.0864 4.1400 43 1 9.1660 -1.3557 5.9510 44 1 12.8016 -2.1974 10.2468 45 1 12.0692 1.7528 6.4353 46 1 11.0182 3.0280 4.6185 47 1 5.8005 -0.0150 0.3734 48 1 5.9713 0.4137 2.0960 49 1 3.7947 1.5442 2.0797 50 1 3.5850 -0.0988 1.4265 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068240297.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:43 Heat of formation + Delta-G solvation = -32.133340 kcal Electronic energy + Delta-G solvation = -28564.778856 eV Core-core repulsion = 24557.276060 eV Total energy + Delta-G solvation = -4007.502797 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.26693 -40.79958 -39.30657 -38.46946 -36.33068 -34.80397 -34.11444 -33.65710 -32.17234 -31.96290 -29.95054 -28.76725 -27.50148 -25.85081 -25.00150 -24.34041 -23.68516 -22.54872 -21.77883 -21.15791 -20.08343 -19.35592 -18.83135 -18.53360 -17.12574 -16.61471 -16.45238 -16.36406 -16.28686 -16.10861 -15.87942 -15.71739 -15.61588 -15.31071 -15.20661 -14.77961 -14.58294 -14.22966 -14.10760 -13.89113 -13.60452 -13.50780 -13.31615 -13.09966 -12.86087 -12.74301 -12.70978 -12.58010 -12.46497 -12.31435 -12.20050 -12.12707 -12.03118 -11.78281 -11.35870 -11.21525 -11.12419 -10.87295 -10.58242 -9.89414 -9.82375 -9.30561 -8.68210 -8.52300 -6.18299 -0.26705 0.58471 1.11728 1.36072 1.45944 1.52876 1.98628 2.15312 2.31498 2.84393 2.86476 3.17466 3.41947 3.54631 3.83834 3.88769 3.93832 4.00057 4.07164 4.12652 4.19933 4.23448 4.27472 4.37138 4.40375 4.47796 4.47967 4.56386 4.65273 4.66663 4.73901 4.75998 4.84193 4.87818 4.94122 4.95767 5.02561 5.05723 5.19277 5.21461 5.24735 5.32662 5.33255 5.43346 5.49632 5.59993 5.63881 5.80065 5.97294 6.01026 6.02810 6.09905 6.40477 6.92185 7.15836 7.69017 8.69700 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.019824 B = 0.001694 C = 0.001579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.102620 B =16520.929155 C =17727.978725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C 0.056 3.944 4 N -0.542 5.542 5 C 0.049 3.951 6 C 0.115 3.885 7 N -0.612 5.612 8 C 0.550 3.450 9 O -0.596 6.596 10 C -0.251 4.251 11 C 0.020 3.980 12 C -0.172 4.172 13 C -0.036 4.036 14 C -0.205 4.205 15 C 0.130 3.870 16 O -0.219 6.219 17 C -0.418 4.418 18 H 0.105 0.895 19 C -0.017 4.017 20 N -0.913 5.913 21 Si 1.018 2.982 22 H -0.263 1.263 23 H -0.271 1.271 24 H -0.253 1.253 25 C -0.249 4.249 26 C -0.040 4.040 27 C 0.107 3.893 28 C 0.039 3.961 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.028 0.972 35 H 0.081 0.919 36 H 0.025 0.975 37 H 0.103 0.897 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.153 0.847 41 H 0.124 0.876 42 H 0.159 0.841 43 H 0.124 0.876 44 H 0.275 0.725 45 H 0.125 0.875 46 H 0.143 0.857 47 H 0.089 0.911 48 H 0.105 0.895 49 H 0.029 0.971 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.312 5.148 -19.542 28.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.071 4.071 4 N -0.267 5.267 5 C -0.080 4.080 6 C -0.007 4.007 7 N -0.344 5.344 8 C 0.343 3.657 9 O -0.479 6.479 10 C -0.271 4.271 11 C 0.000 4.000 12 C -0.172 4.172 13 C -0.054 4.054 14 C -0.225 4.225 15 C 0.078 3.922 16 O -0.124 6.124 17 C -0.493 4.493 18 H 0.123 0.877 19 C -0.216 4.216 20 N -0.549 5.549 21 Si 0.837 3.163 22 H -0.188 1.188 23 H -0.195 1.195 24 H -0.176 1.176 25 C -0.268 4.268 26 C -0.058 4.058 27 C -0.015 4.015 28 C -0.090 4.090 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.047 0.953 35 H 0.099 0.901 36 H 0.043 0.957 37 H 0.121 0.879 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.170 0.830 41 H 0.141 0.859 42 H 0.177 0.823 43 H 0.142 0.858 44 H 0.084 0.916 45 H 0.142 0.858 46 H 0.161 0.839 47 H 0.107 0.893 48 H 0.123 0.877 49 H 0.047 0.953 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -19.976 5.027 -19.828 28.591 hybrid contribution 0.507 0.710 1.405 1.654 sum -19.469 5.737 -18.423 27.411 Atomic orbital electron populations 1.21724 0.95004 1.02192 1.01890 1.21511 0.95879 0.95504 1.02635 1.22197 0.85840 0.98105 1.00976 1.61996 1.08438 1.21388 1.34869 1.22420 0.94389 0.89509 1.01658 1.21712 0.92594 0.98377 0.88056 1.48103 1.34046 1.22006 1.30201 1.18584 0.79488 0.85326 0.82264 1.90756 1.65319 1.21328 1.70529 1.22812 1.00764 1.03177 1.00334 1.22185 0.91925 0.96593 0.89328 1.18761 0.99926 0.97281 1.01264 1.21261 0.98110 0.92533 0.93502 1.20421 0.97421 1.02990 1.01631 1.20194 0.92218 0.91240 0.88538 1.83884 1.45704 1.41625 1.41156 1.21899 1.11068 1.05520 1.10833 0.87730 1.26594 1.01635 0.96615 0.96790 1.70146 1.42765 1.16146 1.25890 0.84591 0.75852 0.77729 0.78120 1.18822 1.19541 1.17622 1.21198 1.04926 0.97063 1.03632 1.21307 0.93398 0.98655 0.92404 1.22229 0.92589 0.83819 1.02900 1.22666 0.94756 1.01453 0.90107 0.92958 0.92353 0.92073 0.91285 0.91842 0.95341 0.90058 0.95706 0.87851 0.90224 0.89842 0.82999 0.85860 0.82315 0.85764 0.91588 0.85766 0.83878 0.89323 0.87694 0.95282 0.87389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.91 71.98 0.71 -0.43 16 2 C -0.12 -1.05 5.87 30.59 0.18 -0.87 16 3 C 0.06 0.59 4.96 86.30 0.43 1.02 16 4 N -0.54 -7.03 4.63 -894.31 -4.14 -11.17 16 5 C 0.05 0.70 5.62 86.38 0.49 1.18 16 6 C 0.12 2.05 6.61 86.35 0.57 2.62 16 7 N -0.61 -12.30 3.00 -822.24 -2.47 -14.77 16 8 C 0.55 14.53 7.62 86.33 0.66 15.19 16 9 O -0.60 -20.20 15.70 -4.43 -0.07 -20.27 16 10 C -0.25 -5.97 8.72 23.62 0.21 -5.76 16 11 C 0.02 0.53 9.45 23.82 0.23 0.76 16 12 C -0.17 -5.33 5.87 -20.13 -0.12 -5.45 16 13 C -0.04 -1.12 9.40 22.55 0.21 -0.91 16 14 C -0.21 -8.07 9.97 22.35 0.22 -7.85 16 15 C 0.13 6.16 6.66 22.72 0.15 6.31 16 16 O -0.22 -12.59 9.74 -20.29 -0.20 -12.79 16 17 C -0.42 -23.40 9.48 67.93 0.64 -22.76 16 18 H 0.11 5.36 5.18 -2.91 -0.02 5.35 16 19 C -0.02 -0.96 5.49 84.86 0.47 -0.49 16 20 N -0.91 -54.06 13.67 21.62 0.30 -53.76 16 21 Si 1.02 41.36 29.55 68.60 2.03 43.38 16 22 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 23 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 24 H -0.25 -9.55 7.11 99.48 0.71 -8.84 16 25 C -0.25 -10.40 9.14 22.34 0.20 -10.20 16 26 C -0.04 -1.34 9.78 22.55 0.22 -1.12 16 27 C 0.11 1.48 6.50 86.50 0.56 2.04 16 28 C 0.04 0.49 5.48 86.54 0.47 0.96 16 29 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.06 0.57 6.40 -2.39 -0.02 0.55 16 34 H 0.03 0.33 8.12 -2.38 -0.02 0.32 16 35 H 0.08 0.76 7.97 -2.39 -0.02 0.74 16 36 H 0.02 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.10 1.10 7.99 -2.39 -0.02 1.08 16 38 H 0.08 1.69 7.04 -2.39 -0.02 1.67 16 39 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 40 H 0.15 2.76 3.95 -2.91 -0.01 2.75 16 41 H 0.12 3.44 7.53 -2.91 -0.02 3.41 16 42 H 0.16 3.49 6.16 -2.91 -0.02 3.47 16 43 H 0.12 4.70 8.06 -2.91 -0.02 4.68 16 44 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 45 H 0.12 5.26 5.61 -2.91 -0.02 5.24 16 46 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 47 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 48 H 0.11 1.23 5.46 -2.39 -0.01 1.21 16 49 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 50 H 0.11 1.01 6.16 -2.39 -0.01 1.00 16 Total: -1.00 -71.68 401.30 2.90 -68.78 By element: Atomic # 1 Polarization: 25.40 SS G_CDS: 0.95 Total: 26.34 kcal Atomic # 6 Polarization: -32.25 SS G_CDS: 6.51 Total: -25.75 kcal Atomic # 7 Polarization: -73.39 SS G_CDS: -6.31 Total: -79.70 kcal Atomic # 8 Polarization: -32.79 SS G_CDS: -0.27 Total: -33.06 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.38 kcal Total: -71.68 2.90 -68.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068240297.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.648 kcal (2) G-P(sol) polarization free energy of solvation -71.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds