Wall clock time and date at job start Wed Apr 1 2020 03:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47381 * 2 1 4 4 H 1.08995 * 109.47140 * 305.00351 * 3 2 1 5 5 C 1.53008 * 109.46659 * 64.99770 * 3 2 1 6 6 C 1.50701 * 109.47419 * 184.99478 * 3 2 1 7 7 O 1.21282 * 119.99606 * 334.87306 * 6 3 2 8 8 N 1.34775 * 119.99981 * 154.86715 * 6 3 2 9 9 C 1.46680 * 121.32679 * 43.76263 * 8 6 3 10 10 C 1.50808 * 109.68907 * 135.64917 * 9 8 6 11 11 C 1.38840 * 117.81553 * 191.36964 * 10 9 8 12 12 C 1.37952 * 120.51093 * 180.50895 * 11 10 9 13 13 C 1.38265 * 119.71664 * 0.04352 * 12 11 10 14 14 C 1.37915 * 119.82425 * 359.74540 * 13 12 11 15 15 C 1.37671 * 122.34613 * 11.45829 * 10 9 8 16 16 C 1.50602 * 122.85416 * 358.57073 * 15 10 9 17 17 C 1.47226 * 121.32787 * 223.47565 * 8 6 3 18 18 H 1.08997 * 109.77457 * 124.63852 * 17 8 6 19 19 C 1.50700 * 109.77597 * 3.84038 * 17 8 6 20 20 O 1.21294 * 119.99954 * 14.86877 * 19 17 8 21 21 N 1.34774 * 120.00077 * 194.86619 * 19 17 8 22 22 C 1.46497 * 119.99978 * 0.02562 * 21 19 17 23 23 C 1.37098 * 120.00276 * 179.97438 * 21 19 17 24 24 H 1.08004 * 119.99640 * 10.11952 * 23 21 19 25 25 C 1.38945 * 120.00300 * 190.11741 * 23 21 19 26 26 N 1.31410 * 120.00012 * 22.05011 * 25 23 21 27 27 Si 1.86799 * 120.00102 * 202.05363 * 25 23 21 28 28 H 1.48499 * 109.47146 * 89.99809 * 27 25 23 29 29 H 1.48493 * 109.47326 * 210.00034 * 27 25 23 30 30 H 1.48505 * 109.46987 * 330.00091 * 27 25 23 31 31 H 1.09001 * 109.47139 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47250 * 300.00373 * 1 2 3 33 33 H 1.09011 * 109.46715 * 59.99915 * 1 2 3 34 34 H 1.08997 * 109.47220 * 240.00184 * 2 1 3 35 35 H 1.09002 * 109.46839 * 119.99811 * 2 1 3 36 36 H 1.08999 * 109.46988 * 288.50459 * 5 3 2 37 37 H 1.08997 * 109.47034 * 48.50880 * 5 3 2 38 38 H 1.08998 * 109.46735 * 168.50384 * 5 3 2 39 39 H 1.09000 * 109.43520 * 255.71395 * 9 8 6 40 40 H 1.09010 * 109.43498 * 15.62732 * 9 8 6 41 41 H 1.08008 * 119.74080 * 0.48770 * 11 10 9 42 42 H 1.07999 * 120.14519 * 180.02562 * 12 11 10 43 43 H 1.07999 * 120.08615 * 179.73213 * 13 12 11 44 44 H 1.08002 * 119.70719 * 179.97438 * 14 13 12 45 45 H 1.09000 * 109.20215 * 140.57074 * 16 15 10 46 46 H 1.09006 * 109.20207 * 259.90480 * 16 15 10 47 47 H 1.08994 * 109.47732 * 84.98147 * 22 21 19 48 48 H 1.09002 * 109.47295 * 204.98443 * 22 21 19 49 49 H 1.09006 * 109.46865 * 324.97902 * 22 21 19 50 50 H 0.97002 * 120.00098 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 1.6352 2.1265 1.3074 6 6 3.5420 1.4443 -0.1237 7 8 4.1817 0.4815 0.2432 8 7 4.1741 2.5157 -0.6422 9 6 3.8004 3.8812 -0.2585 10 6 5.0437 4.6952 -0.0017 11 6 4.8924 5.9361 0.6024 12 6 5.9912 6.7314 0.8536 13 6 7.2526 6.2892 0.5000 14 6 7.4046 5.0549 -0.0962 15 6 6.3000 4.2494 -0.3457 16 6 6.5452 2.9040 -0.9764 17 6 5.2715 2.3621 -1.6115 18 1 5.0453 2.9250 -2.5170 19 6 5.4539 0.9046 -1.9484 20 8 4.5916 0.1025 -1.6581 21 7 6.5752 0.4923 -2.5723 22 6 7.6169 1.4609 -2.9225 23 6 6.7414 -0.8337 -2.8783 24 1 5.9147 -1.5204 -2.7709 25 6 7.9733 -1.2942 -3.3265 26 7 9.0656 -0.6141 -3.0599 27 14 8.0768 -2.8800 -4.3083 28 1 7.9430 -2.5758 -5.7556 29 1 9.3873 -3.5322 -4.0586 30 1 6.9822 -3.7928 -3.8911 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5139 -0.8901 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 0.5606 2.3087 1.3045 37 1 1.8924 1.4831 2.1488 38 1 2.1644 3.0749 1.4002 39 1 3.2264 4.3400 -1.0636 40 1 3.1943 3.8505 0.6471 41 1 3.9067 6.2815 0.8775 42 1 5.8667 7.6955 1.3242 43 1 8.1165 6.9088 0.6899 44 1 8.3907 4.7115 -0.3720 45 1 7.3155 3.0017 -1.7414 46 1 6.8863 2.2063 -0.2115 47 1 8.2741 1.6133 -2.0664 48 1 8.1977 1.0819 -3.7634 49 1 7.1540 2.4085 -3.1984 50 1 9.9257 -0.9358 -3.3725 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072072126.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:02 Heat of formation + Delta-G solvation = 6.619710 kcal Electronic energy + Delta-G solvation = -32161.753235 eV Core-core repulsion = 28155.930897 eV Total energy + Delta-G solvation = -4005.822338 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.65256 -38.98778 -38.10471 -35.65620 -35.11524 -34.48294 -33.02518 -31.45983 -31.18843 -29.91408 -29.01725 -26.38799 -25.98617 -25.05326 -24.55717 -23.39608 -22.19210 -21.46218 -20.12080 -19.56023 -17.97708 -16.98739 -16.89654 -16.49774 -15.75858 -15.34190 -15.26358 -14.85630 -14.66813 -14.54648 -14.37528 -14.03778 -13.91738 -13.50085 -13.34082 -13.15993 -13.01747 -12.91480 -12.66187 -12.50577 -12.37744 -12.13701 -11.86224 -11.60261 -11.44798 -11.40150 -11.26281 -11.17304 -11.09263 -10.86246 -10.62769 -10.53221 -10.39917 -10.33893 -10.27231 -10.04813 -9.05865 -8.88155 -8.69208 -8.45088 -8.17312 -7.93099 -7.58830 -6.31747 -3.72663 1.39190 1.44179 3.13318 3.20501 3.28215 3.32388 3.38485 3.78714 3.97721 4.16324 4.64678 4.79535 4.85426 4.97784 4.99337 5.01994 5.08691 5.15418 5.19699 5.27476 5.36584 5.47832 5.50728 5.53762 5.60016 5.62675 5.65854 5.72131 5.76960 5.85548 5.96618 6.01199 6.05195 6.07371 6.08797 6.14495 6.24327 6.27328 6.47528 6.49864 6.52330 6.55764 6.70428 6.75302 6.81686 7.05935 7.07993 7.23999 7.62713 8.05261 8.12624 8.51140 8.87601 9.24781 9.47295 10.02722 10.71942 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008541 B = 0.004935 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3277.449335 B = 5672.685639 C = 8672.548609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.104 4.104 3 C -0.106 4.106 4 H 0.084 0.916 5 C -0.148 4.148 6 C 0.542 3.458 7 O -0.453 6.453 8 N -0.650 5.650 9 C 0.163 3.837 10 C -0.099 4.099 11 C -0.116 4.116 12 C -0.129 4.129 13 C -0.121 4.121 14 C -0.120 4.120 15 C -0.053 4.053 16 C -0.115 4.115 17 C 0.153 3.847 18 H 0.083 0.917 19 C 0.436 3.564 20 O -0.551 6.551 21 N -0.443 5.443 22 C 0.096 3.904 23 C -0.298 4.298 24 H 0.103 0.897 25 C 0.027 3.973 26 N -0.878 5.878 27 Si 0.921 3.079 28 H -0.278 1.278 29 H -0.285 1.285 30 H -0.270 1.270 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.069 0.931 40 H 0.093 0.907 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.119 0.881 44 H 0.123 0.877 45 H 0.111 0.889 46 H 0.086 0.914 47 H 0.050 0.950 48 H 0.092 0.908 49 H 0.027 0.973 50 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.985 15.036 5.231 18.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.142 4.142 3 C -0.128 4.128 4 H 0.103 0.897 5 C -0.205 4.205 6 C 0.330 3.670 7 O -0.320 6.320 8 N -0.391 5.391 9 C 0.040 3.960 10 C -0.100 4.100 11 C -0.135 4.135 12 C -0.147 4.147 13 C -0.139 4.139 14 C -0.138 4.138 15 C -0.053 4.053 16 C -0.152 4.152 17 C 0.046 3.954 18 H 0.101 0.899 19 C 0.223 3.777 20 O -0.434 6.434 21 N -0.162 5.162 22 C -0.047 4.047 23 C -0.425 4.425 24 H 0.121 0.879 25 C -0.175 4.175 26 N -0.518 5.518 27 Si 0.748 3.252 28 H -0.204 1.204 29 H -0.211 1.211 30 H -0.194 1.194 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.111 0.889 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.137 0.863 44 H 0.141 0.859 45 H 0.129 0.871 46 H 0.105 0.895 47 H 0.068 0.932 48 H 0.111 0.889 49 H 0.046 0.954 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.862 13.955 5.560 17.441 hybrid contribution 0.483 -0.393 -0.538 0.823 sum -8.379 13.562 5.022 16.714 Atomic orbital electron populations 1.21816 0.96198 1.01405 1.01251 1.21333 0.94436 0.94555 1.03910 1.21374 0.93450 0.98793 0.99198 0.89740 1.21984 1.01453 1.00332 0.96732 1.19981 0.88897 0.81409 0.76711 1.90690 1.67943 1.34617 1.38722 1.47301 1.38426 1.04899 1.48450 1.20393 0.93603 0.81602 1.00435 1.19909 0.94820 0.95366 0.99876 1.20957 0.98883 0.93905 0.99706 1.20973 0.92808 0.99714 1.01242 1.21043 0.97283 0.96288 0.99250 1.21244 0.98558 0.94394 0.99575 1.19688 0.92324 0.95909 0.97375 1.21506 0.98972 0.92994 1.01745 1.20580 0.86747 0.96788 0.91295 0.89889 1.19583 0.85675 0.88597 0.83814 1.90645 1.42985 1.55210 1.54555 1.43482 1.15242 1.07730 1.49789 1.22036 0.90915 0.89139 1.02625 1.19707 0.97569 0.84489 1.40774 0.87889 1.25180 0.94451 0.99519 0.98346 1.70091 0.97966 1.40453 1.43277 0.85994 0.77648 0.81585 0.79945 1.20448 1.21116 1.19426 0.92840 0.92938 0.93033 0.90725 0.91426 0.91763 0.92067 0.92266 0.91290 0.88888 0.86206 0.86316 0.86293 0.85905 0.87116 0.89544 0.93151 0.88932 0.95427 0.92334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.68 37.16 0.36 -1.38 16 2 C -0.10 -1.63 4.83 -26.73 -0.13 -1.76 16 3 C -0.11 -1.58 2.36 -91.77 -0.22 -1.80 16 4 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 5 C -0.15 -1.69 8.64 37.16 0.32 -1.37 16 6 C 0.54 10.63 4.65 -10.99 -0.05 10.58 16 7 O -0.45 -11.27 13.24 -20.20 -0.27 -11.54 16 8 N -0.65 -11.48 2.92 -168.44 -0.49 -11.97 16 9 C 0.16 2.13 5.90 -5.04 -0.03 2.10 16 10 C -0.10 -1.33 5.82 -104.55 -0.61 -1.94 16 11 C -0.12 -1.28 9.62 -39.46 -0.38 -1.66 16 12 C -0.13 -1.36 10.05 -39.68 -0.40 -1.76 16 13 C -0.12 -1.36 10.05 -39.69 -0.40 -1.76 16 14 C -0.12 -1.58 9.59 -39.43 -0.38 -1.96 16 15 C -0.05 -0.79 5.76 -104.61 -0.60 -1.39 16 16 C -0.11 -2.02 3.90 -28.29 -0.11 -2.13 16 17 C 0.15 2.95 2.54 -69.04 -0.18 2.78 16 18 H 0.08 1.46 8.05 -51.93 -0.42 1.04 16 19 C 0.44 10.84 6.58 -10.99 -0.07 10.76 16 20 O -0.55 -15.37 11.40 -20.21 -0.23 -15.60 16 21 N -0.44 -11.42 3.02 -122.19 -0.37 -11.79 16 22 C 0.10 2.12 6.94 59.85 0.42 2.54 16 23 C -0.30 -8.44 9.44 -14.93 -0.14 -8.58 16 24 H 0.10 3.12 7.30 -52.48 -0.38 2.74 16 25 C 0.03 0.73 4.96 -17.47 -0.09 0.64 16 26 N -0.88 -23.32 10.56 55.50 0.59 -22.73 16 27 Si 0.92 21.05 29.61 -169.99 -5.03 16.02 16 28 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 29 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 30 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.53 6.84 -51.93 -0.36 0.17 16 33 H 0.05 0.56 8.14 -51.92 -0.42 0.14 16 34 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 35 H 0.07 1.13 7.99 -51.93 -0.41 0.71 16 36 H 0.06 0.59 7.16 -51.93 -0.37 0.21 16 37 H 0.06 0.75 8.06 -51.93 -0.42 0.33 16 38 H 0.06 0.61 4.91 -51.93 -0.25 0.36 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.09 1.05 4.69 -51.92 -0.24 0.81 16 41 H 0.12 1.00 8.05 -52.48 -0.42 0.58 16 42 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 43 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 44 H 0.12 1.49 8.05 -52.49 -0.42 1.07 16 45 H 0.11 1.85 4.07 -51.93 -0.21 1.64 16 46 H 0.09 1.80 8.06 -51.93 -0.42 1.38 16 47 H 0.05 1.12 6.88 -51.93 -0.36 0.76 16 48 H 0.09 2.19 5.95 -51.93 -0.31 1.88 16 49 H 0.03 0.50 5.90 -51.93 -0.31 0.20 16 50 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 LS Contribution 380.49 15.07 5.73 5.73 Total: -1.00 -33.74 380.49 -10.16 -43.90 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -7.40 Total: 6.08 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: -2.68 Total: 1.90 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: -0.28 Total: -46.49 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: -0.50 Total: -27.14 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.02 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.74 -10.16 -43.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072072126.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.515 kcal (2) G-P(sol) polarization free energy of solvation -33.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds