Wall clock time and date at job start Wed Apr 1 2020 03:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47381 * 2 1 4 4 H 1.08995 * 109.47140 * 305.00351 * 3 2 1 5 5 C 1.53008 * 109.46659 * 64.99770 * 3 2 1 6 6 C 1.50701 * 109.47419 * 184.99478 * 3 2 1 7 7 O 1.21282 * 119.99606 * 334.87306 * 6 3 2 8 8 N 1.34775 * 119.99981 * 154.86715 * 6 3 2 9 9 C 1.46680 * 121.32679 * 43.76263 * 8 6 3 10 10 C 1.50808 * 109.68907 * 135.64917 * 9 8 6 11 11 C 1.38840 * 117.81553 * 191.36964 * 10 9 8 12 12 C 1.37952 * 120.51093 * 180.50895 * 11 10 9 13 13 C 1.38265 * 119.71664 * 0.04352 * 12 11 10 14 14 C 1.37915 * 119.82425 * 359.74540 * 13 12 11 15 15 C 1.37671 * 122.34613 * 11.45829 * 10 9 8 16 16 C 1.50602 * 122.85416 * 358.57073 * 15 10 9 17 17 C 1.47226 * 121.32787 * 223.47565 * 8 6 3 18 18 H 1.08997 * 109.77457 * 124.63852 * 17 8 6 19 19 C 1.50700 * 109.77597 * 3.84038 * 17 8 6 20 20 O 1.21294 * 119.99954 * 14.86877 * 19 17 8 21 21 N 1.34774 * 120.00077 * 194.86619 * 19 17 8 22 22 C 1.46497 * 119.99978 * 0.02562 * 21 19 17 23 23 C 1.37098 * 120.00276 * 179.97438 * 21 19 17 24 24 H 1.08004 * 119.99640 * 10.11952 * 23 21 19 25 25 C 1.38945 * 120.00300 * 190.11741 * 23 21 19 26 26 N 1.31410 * 120.00012 * 22.05011 * 25 23 21 27 27 Si 1.86799 * 120.00102 * 202.05363 * 25 23 21 28 28 H 1.48499 * 109.47146 * 89.99809 * 27 25 23 29 29 H 1.48493 * 109.47326 * 210.00034 * 27 25 23 30 30 H 1.48505 * 109.46987 * 330.00091 * 27 25 23 31 31 H 1.09001 * 109.47139 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47250 * 300.00373 * 1 2 3 33 33 H 1.09011 * 109.46715 * 59.99915 * 1 2 3 34 34 H 1.08997 * 109.47220 * 240.00184 * 2 1 3 35 35 H 1.09002 * 109.46839 * 119.99811 * 2 1 3 36 36 H 1.08999 * 109.46988 * 288.50459 * 5 3 2 37 37 H 1.08997 * 109.47034 * 48.50880 * 5 3 2 38 38 H 1.08998 * 109.46735 * 168.50384 * 5 3 2 39 39 H 1.09000 * 109.43520 * 255.71395 * 9 8 6 40 40 H 1.09010 * 109.43498 * 15.62732 * 9 8 6 41 41 H 1.08008 * 119.74080 * 0.48770 * 11 10 9 42 42 H 1.07999 * 120.14519 * 180.02562 * 12 11 10 43 43 H 1.07999 * 120.08615 * 179.73213 * 13 12 11 44 44 H 1.08002 * 119.70719 * 179.97438 * 14 13 12 45 45 H 1.09000 * 109.20215 * 140.57074 * 16 15 10 46 46 H 1.09006 * 109.20207 * 259.90480 * 16 15 10 47 47 H 1.08994 * 109.47732 * 84.98147 * 22 21 19 48 48 H 1.09002 * 109.47295 * 204.98443 * 22 21 19 49 49 H 1.09006 * 109.46865 * 324.97902 * 22 21 19 50 50 H 0.97002 * 120.00098 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 1.6352 2.1265 1.3074 6 6 3.5420 1.4443 -0.1237 7 8 4.1817 0.4815 0.2432 8 7 4.1741 2.5157 -0.6422 9 6 3.8004 3.8812 -0.2585 10 6 5.0437 4.6952 -0.0017 11 6 4.8924 5.9361 0.6024 12 6 5.9912 6.7314 0.8536 13 6 7.2526 6.2892 0.5000 14 6 7.4046 5.0549 -0.0962 15 6 6.3000 4.2494 -0.3457 16 6 6.5452 2.9040 -0.9764 17 6 5.2715 2.3621 -1.6115 18 1 5.0453 2.9250 -2.5170 19 6 5.4539 0.9046 -1.9484 20 8 4.5916 0.1025 -1.6581 21 7 6.5752 0.4923 -2.5723 22 6 7.6169 1.4609 -2.9225 23 6 6.7414 -0.8337 -2.8783 24 1 5.9147 -1.5204 -2.7709 25 6 7.9733 -1.2942 -3.3265 26 7 9.0656 -0.6141 -3.0599 27 14 8.0768 -2.8800 -4.3083 28 1 7.9430 -2.5758 -5.7556 29 1 9.3873 -3.5322 -4.0586 30 1 6.9822 -3.7928 -3.8911 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5139 -0.8901 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 0.5606 2.3087 1.3045 37 1 1.8924 1.4831 2.1488 38 1 2.1644 3.0749 1.4002 39 1 3.2264 4.3400 -1.0636 40 1 3.1943 3.8505 0.6471 41 1 3.9067 6.2815 0.8775 42 1 5.8667 7.6955 1.3242 43 1 8.1165 6.9088 0.6899 44 1 8.3907 4.7115 -0.3720 45 1 7.3155 3.0017 -1.7414 46 1 6.8863 2.2063 -0.2115 47 1 8.2741 1.6133 -2.0664 48 1 8.1977 1.0819 -3.7634 49 1 7.1540 2.4085 -3.1984 50 1 9.9257 -0.9358 -3.3725 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072072126.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:01 Heat of formation + Delta-G solvation = -12.792804 kcal Electronic energy + Delta-G solvation = -32162.595025 eV Core-core repulsion = 28155.930897 eV Total energy + Delta-G solvation = -4006.664128 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.07718 -40.15810 -39.85358 -36.99656 -36.79783 -36.12538 -34.46129 -33.26841 -32.28095 -31.06027 -30.19397 -28.21291 -27.23493 -26.75994 -25.62722 -24.92691 -23.29522 -22.64338 -21.32935 -21.11197 -19.48090 -19.00028 -18.45505 -17.68613 -17.18275 -16.88000 -16.51205 -16.27366 -16.11106 -15.96417 -15.67558 -15.54976 -15.39570 -14.99787 -14.73820 -14.31897 -14.27204 -14.05908 -14.02231 -13.83805 -13.74677 -13.53379 -13.25322 -13.10281 -12.92040 -12.72758 -12.59717 -12.46432 -12.38225 -12.31596 -12.18180 -12.08125 -11.89489 -11.74282 -11.62393 -11.53524 -10.90021 -10.55090 -10.04977 -9.80825 -9.61719 -9.45485 -9.24052 -8.38375 -5.88387 0.46646 0.51175 1.31949 1.36791 1.49070 1.67160 1.89585 2.20443 2.27918 2.86481 2.98341 3.03319 3.65316 3.68039 3.81220 3.87852 3.92212 4.03032 4.08691 4.10117 4.14262 4.30250 4.34458 4.43682 4.51082 4.54965 4.56811 4.58378 4.61573 4.74666 4.79692 4.86218 4.89676 4.96806 4.98969 5.04783 5.12793 5.17527 5.20200 5.22488 5.34725 5.39366 5.44604 5.50063 5.57451 5.66787 5.68528 5.75406 6.05235 6.16039 6.46186 6.68477 7.13360 7.43720 7.46900 8.05004 8.63515 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008541 B = 0.004935 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3277.449335 B = 5672.685639 C = 8672.548609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.103 4.103 3 C -0.099 4.099 4 H 0.106 0.894 5 C -0.140 4.140 6 C 0.535 3.465 7 O -0.526 6.526 8 N -0.654 5.654 9 C 0.157 3.843 10 C -0.111 4.111 11 C -0.110 4.110 12 C -0.122 4.122 13 C -0.122 4.122 14 C -0.133 4.133 15 C -0.083 4.083 16 C -0.097 4.097 17 C 0.159 3.841 18 H 0.107 0.893 19 C 0.422 3.578 20 O -0.589 6.589 21 N -0.460 5.460 22 C 0.110 3.890 23 C -0.340 4.340 24 H 0.066 0.934 25 C -0.001 4.001 26 N -0.889 5.889 27 Si 0.985 3.015 28 H -0.262 1.262 29 H -0.272 1.272 30 H -0.282 1.282 31 H 0.054 0.946 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.026 0.974 35 H 0.044 0.956 36 H 0.100 0.900 37 H 0.047 0.953 38 H 0.075 0.925 39 H 0.100 0.900 40 H 0.116 0.884 41 H 0.156 0.844 42 H 0.154 0.846 43 H 0.143 0.857 44 H 0.121 0.879 45 H 0.112 0.888 46 H 0.038 0.962 47 H 0.041 0.959 48 H 0.075 0.925 49 H 0.066 0.934 50 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.636 19.106 5.624 22.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.141 4.141 3 C -0.121 4.121 4 H 0.124 0.876 5 C -0.197 4.197 6 C 0.326 3.674 7 O -0.398 6.398 8 N -0.394 5.394 9 C 0.037 3.963 10 C -0.111 4.111 11 C -0.128 4.128 12 C -0.139 4.139 13 C -0.139 4.139 14 C -0.151 4.151 15 C -0.083 4.083 16 C -0.135 4.135 17 C 0.052 3.948 18 H 0.125 0.875 19 C 0.210 3.790 20 O -0.473 6.473 21 N -0.180 5.180 22 C -0.033 4.033 23 C -0.468 4.468 24 H 0.084 0.916 25 C -0.203 4.203 26 N -0.528 5.528 27 Si 0.809 3.191 28 H -0.187 1.187 29 H -0.197 1.197 30 H -0.207 1.207 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.045 0.955 35 H 0.063 0.937 36 H 0.119 0.881 37 H 0.066 0.934 38 H 0.094 0.906 39 H 0.117 0.883 40 H 0.133 0.867 41 H 0.174 0.826 42 H 0.171 0.829 43 H 0.161 0.839 44 H 0.139 0.861 45 H 0.130 0.870 46 H 0.057 0.943 47 H 0.059 0.941 48 H 0.094 0.906 49 H 0.084 0.916 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.504 18.101 5.947 21.757 hybrid contribution 1.039 -1.601 -0.585 1.997 sum -9.465 16.500 5.361 19.763 Atomic orbital electron populations 1.21746 0.92366 1.02275 1.03148 1.21275 0.97602 0.94730 1.00486 1.21414 0.89661 0.98743 1.02253 0.87628 1.21972 1.03895 1.00131 0.93655 1.21026 0.90938 0.80651 0.74831 1.90663 1.69666 1.37224 1.42283 1.47488 1.37615 1.06722 1.47529 1.20797 0.94209 0.78841 1.02479 1.20055 0.93972 0.96653 1.00461 1.21311 1.00892 0.92478 0.98162 1.21441 0.92044 1.00761 0.99681 1.21372 0.98963 0.95442 0.98158 1.21331 0.98045 0.95380 1.00392 1.19517 0.94136 0.94787 0.99885 1.21196 0.97896 0.93977 1.00454 1.20461 0.88632 0.92753 0.92940 0.87514 1.20651 0.84772 0.91038 0.82512 1.90621 1.44189 1.57143 1.55385 1.43706 1.16391 1.07537 1.50397 1.21965 0.90136 0.89804 1.01366 1.19526 0.97439 0.85772 1.44069 0.91570 1.25908 0.93554 1.02661 0.98158 1.70154 0.98276 1.41590 1.42776 0.85069 0.77490 0.77522 0.79021 1.18677 1.19686 1.20720 0.92672 0.90256 0.91686 0.95516 0.93713 0.88116 0.93385 0.90636 0.88255 0.86668 0.82646 0.82875 0.83887 0.86125 0.87027 0.94337 0.94063 0.90617 0.91602 0.91581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 9.68 71.98 0.70 -2.32 16 2 C -0.10 -3.36 4.83 30.59 0.15 -3.21 16 3 C -0.10 -2.90 2.36 -11.54 -0.03 -2.93 16 4 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 5 C -0.14 -2.81 8.64 71.98 0.62 -2.19 16 6 C 0.53 21.86 4.65 87.66 0.41 22.27 16 7 O -0.53 -28.55 13.24 21.59 0.29 -28.26 16 8 N -0.65 -23.22 2.92 -805.20 -2.35 -25.58 16 9 C 0.16 3.67 5.90 85.63 0.51 4.18 16 10 C -0.11 -2.69 5.82 -19.82 -0.12 -2.81 16 11 C -0.11 -1.91 9.62 22.35 0.22 -1.70 16 12 C -0.12 -1.97 10.05 22.21 0.22 -1.74 16 13 C -0.12 -2.35 10.05 22.20 0.22 -2.12 16 14 C -0.13 -3.39 9.59 22.37 0.21 -3.17 16 15 C -0.08 -2.45 5.76 -19.85 -0.11 -2.56 16 16 C -0.10 -3.60 3.90 29.58 0.12 -3.48 16 17 C 0.16 6.37 2.54 43.87 0.11 6.48 16 18 H 0.11 3.74 8.05 -2.39 -0.02 3.72 16 19 C 0.42 22.48 6.58 87.66 0.58 23.06 16 20 O -0.59 -35.80 11.40 21.55 0.25 -35.55 16 21 N -0.46 -25.39 3.02 -658.90 -1.99 -27.38 16 22 C 0.11 5.07 6.94 127.77 0.89 5.95 16 23 C -0.34 -20.71 9.44 84.04 0.79 -19.91 16 24 H 0.07 4.41 7.30 -2.91 -0.02 4.39 16 25 C 0.00 -0.07 4.96 84.93 0.42 0.35 16 26 N -0.89 -48.62 10.56 21.66 0.23 -48.39 16 27 Si 0.99 44.60 29.61 68.60 2.03 46.63 16 28 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 29 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 30 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 31 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.08 1.32 6.84 -2.39 -0.02 1.31 16 33 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 34 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.04 1.62 7.99 -2.39 -0.02 1.60 16 36 H 0.10 1.34 7.16 -2.39 -0.02 1.32 16 37 H 0.05 1.11 8.06 -2.39 -0.02 1.09 16 38 H 0.08 1.27 4.91 -2.39 -0.01 1.26 16 39 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.12 2.14 4.69 -2.38 -0.01 2.13 16 41 H 0.16 1.58 8.05 -2.91 -0.02 1.56 16 42 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 43 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 44 H 0.12 2.96 8.05 -2.91 -0.02 2.94 16 45 H 0.11 3.91 4.07 -2.39 -0.01 3.90 16 46 H 0.04 1.75 8.06 -2.38 -0.02 1.73 16 47 H 0.04 1.94 6.88 -2.39 -0.02 1.92 16 48 H 0.08 3.72 5.95 -2.39 -0.01 3.70 16 49 H 0.07 2.47 5.90 -2.38 -0.01 2.45 16 50 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 Total: -1.00 -84.11 380.49 5.30 -78.81 By element: Atomic # 1 Polarization: 24.63 SS G_CDS: 0.95 Total: 25.58 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: 5.90 Total: 14.14 kcal Atomic # 7 Polarization: -97.22 SS G_CDS: -4.12 Total: -101.34 kcal Atomic # 8 Polarization: -64.34 SS G_CDS: 0.53 Total: -63.81 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -84.11 5.30 -78.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072072126.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.015 kcal (2) G-P(sol) polarization free energy of solvation -84.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds