Wall clock time and date at job start Wed Apr 1 2020 03:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46810 * 2 1 4 4 H 1.09003 * 109.47251 * 305.47754 * 3 2 1 5 5 C 1.50704 * 109.46969 * 185.48331 * 3 2 1 6 6 H 1.08002 * 119.99717 * 244.21208 * 5 3 2 7 7 C 1.37875 * 120.00046 * 64.21388 * 5 3 2 8 8 N 1.31518 * 119.99862 * 197.57642 * 7 5 3 9 9 Si 1.86800 * 120.00248 * 17.57309 * 7 5 3 10 10 H 1.48499 * 109.47212 * 180.02562 * 9 7 5 11 11 H 1.48500 * 109.46727 * 60.00178 * 9 7 5 12 12 H 1.48496 * 109.47188 * 300.00496 * 9 7 5 13 13 N 1.46496 * 109.47369 * 65.48046 * 3 2 1 14 14 C 1.34777 * 120.00237 * 274.99895 * 13 3 2 15 15 O 1.21283 * 119.99466 * 359.97438 * 14 13 3 16 16 C 1.50695 * 120.00330 * 180.02562 * 14 13 3 17 17 H 1.09001 * 110.86010 * 62.33235 * 16 14 13 18 18 C 1.54634 * 110.96566 * 298.54891 * 16 14 13 19 19 C 1.51285 * 104.19221 * 266.67472 * 18 16 14 20 20 O 1.21284 * 124.93860 * 163.70781 * 19 18 16 21 21 N 1.34421 * 110.11533 * 343.75216 * 19 18 16 22 22 C 1.46503 * 124.34414 * 179.57009 * 21 19 18 23 23 H 1.09007 * 109.46757 * 177.80958 * 22 21 19 24 24 C 1.53000 * 109.47345 * 297.80481 * 22 21 19 25 25 C 1.50696 * 109.47432 * 57.80978 * 22 21 19 26 26 C 1.38241 * 120.00036 * 213.91483 * 25 22 21 27 27 C 1.38239 * 119.99554 * 179.79007 * 26 25 22 28 28 C 1.38224 * 120.00314 * 0.45545 * 27 26 25 29 29 C 1.38237 * 120.00294 * 359.77704 * 28 27 26 30 30 C 1.38235 * 119.99700 * 0.02562 * 29 28 27 31 31 C 1.46753 * 111.30223 * 359.58907 * 21 19 18 32 32 H 1.09006 * 109.47025 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47435 * 299.99766 * 1 2 3 34 34 H 1.09001 * 109.47643 * 60.00235 * 1 2 3 35 35 H 1.08999 * 109.46930 * 240.00081 * 2 1 3 36 36 H 1.08998 * 109.47184 * 120.00003 * 2 1 3 37 37 H 0.96995 * 119.99859 * 354.86665 * 8 7 5 38 38 H 0.96998 * 120.00046 * 95.00274 * 13 3 2 39 39 H 1.08999 * 110.48728 * 25.35551 * 18 16 14 40 40 H 1.09000 * 110.48805 * 148.00241 * 18 16 14 41 41 H 1.09007 * 109.46803 * 60.00506 * 24 22 21 42 42 H 1.09001 * 109.47370 * 179.97438 * 24 22 21 43 43 H 1.08996 * 109.47432 * 300.00647 * 24 22 21 44 44 H 1.07988 * 119.99803 * 359.97438 * 26 25 22 45 45 H 1.08002 * 119.99267 * 180.25551 * 27 26 25 46 46 H 1.08000 * 120.00396 * 179.79178 * 28 27 26 47 47 H 1.08004 * 120.00419 * 180.02562 * 29 28 27 48 48 H 1.08001 * 120.00088 * 179.97438 * 30 29 28 49 49 H 1.09004 * 110.24826 * 258.01765 * 31 21 19 50 50 H 1.08999 * 110.24611 * 136.02240 * 31 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5987 1.9839 -0.8369 5 6 3.5408 1.4447 -0.1358 6 1 4.1550 1.8254 0.6669 7 6 4.1298 0.9608 -1.2846 8 7 5.4046 0.6376 -1.2841 9 14 3.1171 0.7642 -2.8420 10 1 3.9775 0.2292 -3.9277 11 1 2.5713 2.0844 -3.2473 12 1 1.9974 -0.1777 -2.5887 13 7 1.6623 2.0940 1.2566 14 6 0.4459 2.6606 1.3830 15 8 -0.3358 2.6314 0.4562 16 6 0.0576 3.3312 2.6754 17 1 0.7122 4.1771 2.8857 18 6 0.0646 2.3216 3.8466 19 6 -1.3639 1.8291 3.9203 20 8 -1.7257 0.8330 4.5102 21 7 -2.1737 2.6556 3.2362 22 6 -3.6198 2.4672 3.0964 23 1 -4.0410 3.2967 2.5282 24 6 -3.8943 1.1540 2.3608 25 6 -4.2548 2.4202 4.4622 26 6 -5.3535 1.6117 4.6862 27 6 -5.9332 1.5653 5.9403 28 6 -5.4202 2.3345 6.9678 29 6 -4.3245 3.1467 6.7426 30 6 -3.7422 3.1900 5.4896 31 6 -1.4231 3.7706 2.6472 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 -0.3634 0.5138 -0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5138 0.8900 37 1 5.9480 0.8089 -0.4991 38 1 2.2876 2.1177 1.9977 39 1 0.7426 1.4951 3.6337 40 1 0.3457 2.8172 4.7759 41 1 -3.4731 0.3245 2.9290 42 1 -4.9702 1.0135 2.2571 43 1 -3.4350 1.1879 1.3729 44 1 -5.7570 1.0141 3.8823 45 1 -6.7891 0.9305 6.1163 46 1 -5.8752 2.3008 7.9467 47 1 -3.9233 3.7474 7.5456 48 1 -2.8864 3.8248 5.3135 49 1 -1.5599 4.6736 3.2422 50 1 -1.7461 3.9422 1.6204 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183810304.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:02 Heat of formation + Delta-G solvation = -44.781155 kcal Electronic energy + Delta-G solvation = -31335.764292 eV Core-core repulsion = 27327.713045 eV Total energy + Delta-G solvation = -4008.051247 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.10272 -39.50388 -38.65847 -36.33854 -35.32731 -34.65989 -32.53032 -31.70648 -31.16504 -30.47497 -28.99080 -27.71150 -27.22772 -24.50141 -23.39664 -22.52160 -22.27488 -21.56284 -20.30133 -19.57126 -19.08471 -18.07505 -17.38779 -16.95467 -16.54652 -15.78498 -15.52637 -15.33366 -15.06936 -14.71440 -14.61900 -14.11763 -13.93697 -13.83317 -13.60919 -13.35512 -13.22959 -12.93794 -12.82184 -12.63566 -12.46034 -12.35296 -12.08504 -11.97176 -11.89179 -11.77331 -11.57551 -11.53692 -11.10569 -11.03578 -10.93074 -10.71459 -10.46038 -9.93065 -9.74557 -9.60862 -9.26385 -9.08618 -9.05915 -8.93755 -8.68943 -8.35468 -8.15919 -6.61989 -4.25559 1.17845 1.26383 2.61129 2.88726 3.06915 3.35785 3.41313 3.55695 3.65850 3.77247 4.23504 4.29240 4.38480 4.54231 4.69377 4.77452 4.81734 4.92627 4.94429 5.07070 5.08705 5.12549 5.29156 5.33348 5.35864 5.41929 5.49231 5.57477 5.71095 5.73881 5.77028 5.83880 5.87673 6.05133 6.08262 6.13465 6.25661 6.30793 6.35298 6.37548 6.57960 6.66233 6.77742 6.84167 6.91188 7.01501 7.10010 7.31532 7.35001 7.60543 8.19227 8.19752 8.38893 8.64946 8.88769 9.43365 10.78800 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.024474 B = 0.002722 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.806572 B =10284.913234 C =10641.097580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.140 4.140 3 C 0.249 3.751 4 H 0.041 0.959 5 C -0.619 4.619 6 H 0.061 0.939 7 C 0.040 3.960 8 N -0.897 5.897 9 Si 1.040 2.960 10 H -0.284 1.284 11 H -0.280 1.280 12 H -0.269 1.269 13 N -0.697 5.697 14 C 0.509 3.491 15 O -0.543 6.543 16 C -0.127 4.127 17 H 0.121 0.879 18 C -0.149 4.149 19 C 0.522 3.478 20 O -0.521 6.521 21 N -0.610 5.610 22 C 0.199 3.801 23 H 0.100 0.900 24 C -0.167 4.167 25 C -0.085 4.085 26 C -0.109 4.109 27 C -0.120 4.120 28 C -0.124 4.124 29 C -0.120 4.120 30 C -0.103 4.103 31 C 0.116 3.884 32 H 0.029 0.971 33 H 0.047 0.953 34 H 0.050 0.950 35 H 0.069 0.931 36 H 0.050 0.950 37 H 0.269 0.731 38 H 0.393 0.607 39 H 0.107 0.893 40 H 0.111 0.889 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.125 0.875 45 H 0.120 0.880 46 H 0.118 0.882 47 H 0.119 0.881 48 H 0.116 0.884 49 H 0.075 0.925 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.114 7.352 13.614 24.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.178 4.178 3 C 0.146 3.854 4 H 0.059 0.941 5 C -0.657 4.657 6 H 0.080 0.920 7 C -0.167 4.167 8 N -0.529 5.529 9 Si 0.867 3.133 10 H -0.209 1.209 11 H -0.206 1.206 12 H -0.195 1.195 13 N -0.344 5.344 14 C 0.293 3.707 15 O -0.422 6.422 16 C -0.149 4.149 17 H 0.139 0.861 18 C -0.190 4.190 19 C 0.309 3.691 20 O -0.397 6.397 21 N -0.344 5.344 22 C 0.097 3.903 23 H 0.118 0.882 24 C -0.225 4.225 25 C -0.086 4.086 26 C -0.127 4.127 27 C -0.138 4.138 28 C -0.142 4.142 29 C -0.138 4.138 30 C -0.121 4.121 31 C -0.007 4.007 32 H 0.048 0.952 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.226 0.774 39 H 0.125 0.875 40 H 0.129 0.871 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.143 0.857 45 H 0.138 0.862 46 H 0.136 0.864 47 H 0.137 0.863 48 H 0.134 0.866 49 H 0.093 0.907 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -19.816 6.224 11.651 23.815 hybrid contribution 0.492 0.655 2.073 2.229 sum -19.324 6.880 13.723 24.679 Atomic orbital electron populations 1.21856 0.97367 0.98875 1.01737 1.22371 0.93785 0.99783 1.01898 1.19047 0.95791 0.88507 0.82086 0.94110 1.22069 0.89677 1.48642 1.05266 0.92048 1.25670 0.97504 0.92266 1.01281 1.70880 1.07709 1.40191 1.34163 0.84129 0.75573 0.77653 0.75900 1.20946 1.20640 1.19485 1.46218 1.14395 1.55628 1.18179 1.19996 0.82816 0.79400 0.88506 1.90661 1.50848 1.59781 1.40864 1.22358 0.98061 0.99976 0.94534 0.86098 1.22401 0.96371 1.00732 0.99448 1.20714 0.88050 0.82627 0.77675 1.90718 1.80134 1.25122 1.43681 1.48282 1.06706 1.26602 1.52835 1.19687 0.78527 0.99404 0.92696 0.88194 1.22241 1.01790 0.97295 1.01189 1.20096 0.96003 0.96911 0.95545 1.21069 0.96002 0.98208 0.97414 1.21106 1.00126 0.99384 0.93192 1.21117 0.96922 0.97193 0.98961 1.21093 0.96472 0.99414 0.96856 1.20896 0.99426 0.98952 0.92863 1.22031 0.89254 0.88571 1.00820 0.95182 0.93402 0.93125 0.91268 0.93109 0.92073 0.77395 0.87453 0.87128 0.90935 0.91360 0.91324 0.85693 0.86165 0.86353 0.86320 0.86557 0.90720 0.88198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 8.52 37.16 0.32 -2.54 16 2 C -0.14 -3.09 5.27 -26.73 -0.14 -3.23 16 3 C 0.25 5.69 1.82 -69.08 -0.13 5.56 16 4 H 0.04 1.02 6.31 -51.93 -0.33 0.69 16 5 C -0.62 -16.17 9.02 -34.44 -0.31 -16.48 16 6 H 0.06 1.67 7.97 -52.49 -0.42 1.26 16 7 C 0.04 1.09 5.30 -17.82 -0.09 1.00 16 8 N -0.90 -26.26 13.70 55.43 0.76 -25.50 16 9 Si 1.04 24.63 26.29 -169.99 -4.47 20.16 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 12 H -0.27 -5.98 5.64 56.52 0.32 -5.66 16 13 N -0.70 -12.90 4.75 -54.93 -0.26 -13.16 16 14 C 0.51 8.46 5.75 -10.99 -0.06 8.40 16 15 O -0.54 -10.63 12.65 5.56 0.07 -10.56 16 16 C -0.13 -1.45 3.54 -90.14 -0.32 -1.77 16 17 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 18 C -0.15 -1.71 6.39 -26.74 -0.17 -1.88 16 19 C 0.52 7.41 6.90 -10.86 -0.07 7.33 16 20 O -0.52 -9.23 16.03 5.55 0.09 -9.15 16 21 N -0.61 -7.34 2.01 -166.17 -0.33 -7.67 16 22 C 0.20 2.23 3.28 -69.08 -0.23 2.00 16 23 H 0.10 0.93 8.07 -51.93 -0.42 0.51 16 24 C -0.17 -1.99 8.41 37.16 0.31 -1.68 16 25 C -0.08 -0.96 4.74 -104.62 -0.50 -1.46 16 26 C -0.11 -1.15 9.14 -39.58 -0.36 -1.51 16 27 C -0.12 -1.17 10.05 -39.59 -0.40 -1.56 16 28 C -0.12 -1.18 10.05 -39.59 -0.40 -1.58 16 29 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 30 C -0.10 -1.13 8.85 -39.58 -0.35 -1.48 16 31 C 0.12 1.21 6.68 -3.13 -0.02 1.19 16 32 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.05 0.96 5.63 -51.93 -0.29 0.67 16 34 H 0.05 1.05 7.88 -51.93 -0.41 0.64 16 35 H 0.07 1.61 4.65 -51.93 -0.24 1.37 16 36 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.27 7.79 8.73 -40.82 -0.36 7.44 16 38 H 0.39 6.48 8.34 -40.82 -0.34 6.14 16 39 H 0.11 1.36 7.51 -51.93 -0.39 0.97 16 40 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.07 1.05 6.95 -51.93 -0.36 0.69 16 42 H 0.07 0.64 6.55 -51.93 -0.34 0.30 16 43 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.13 1.14 6.07 -52.49 -0.32 0.82 16 45 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 46 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 47 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 48 H 0.12 1.18 7.51 -52.49 -0.39 0.78 16 49 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.10 1.17 6.94 -51.93 -0.36 0.81 16 LS Contribution 391.16 15.07 5.89 5.89 Total: -1.00 -33.04 391.16 -9.22 -42.26 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -7.65 Total: 9.01 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: -3.32 Total: -11.30 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: 0.16 Total: -46.33 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: 0.16 Total: -19.70 kcal Atomic # 14 Polarization: 24.63 SS G_CDS: -4.47 Total: 20.16 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.04 -9.22 -42.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183810304.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.520 kcal (2) G-P(sol) polarization free energy of solvation -33.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds