Wall clock time and date at job start Wed Apr 1 2020 03:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46810 * 2 1 4 4 H 1.09003 * 109.47251 * 305.47754 * 3 2 1 5 5 C 1.50704 * 109.46969 * 185.48331 * 3 2 1 6 6 H 1.08002 * 119.99717 * 244.21208 * 5 3 2 7 7 C 1.37875 * 120.00046 * 64.21388 * 5 3 2 8 8 N 1.31518 * 119.99862 * 197.57642 * 7 5 3 9 9 Si 1.86800 * 120.00248 * 17.57309 * 7 5 3 10 10 H 1.48499 * 109.47212 * 180.02562 * 9 7 5 11 11 H 1.48500 * 109.46727 * 60.00178 * 9 7 5 12 12 H 1.48496 * 109.47188 * 300.00496 * 9 7 5 13 13 N 1.46496 * 109.47369 * 65.48046 * 3 2 1 14 14 C 1.34777 * 120.00237 * 274.99895 * 13 3 2 15 15 O 1.21283 * 119.99466 * 359.97438 * 14 13 3 16 16 C 1.50695 * 120.00330 * 180.02562 * 14 13 3 17 17 H 1.09001 * 110.86010 * 62.33235 * 16 14 13 18 18 C 1.54634 * 110.96566 * 298.54891 * 16 14 13 19 19 C 1.51285 * 104.19221 * 266.67472 * 18 16 14 20 20 O 1.21284 * 124.93860 * 163.70781 * 19 18 16 21 21 N 1.34421 * 110.11533 * 343.75216 * 19 18 16 22 22 C 1.46503 * 124.34414 * 179.57009 * 21 19 18 23 23 H 1.09007 * 109.46757 * 177.80958 * 22 21 19 24 24 C 1.53000 * 109.47345 * 297.80481 * 22 21 19 25 25 C 1.50696 * 109.47432 * 57.80978 * 22 21 19 26 26 C 1.38241 * 120.00036 * 213.91483 * 25 22 21 27 27 C 1.38239 * 119.99554 * 179.79007 * 26 25 22 28 28 C 1.38224 * 120.00314 * 0.45545 * 27 26 25 29 29 C 1.38237 * 120.00294 * 359.77704 * 28 27 26 30 30 C 1.38235 * 119.99700 * 0.02562 * 29 28 27 31 31 C 1.46753 * 111.30223 * 359.58907 * 21 19 18 32 32 H 1.09006 * 109.47025 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47435 * 299.99766 * 1 2 3 34 34 H 1.09001 * 109.47643 * 60.00235 * 1 2 3 35 35 H 1.08999 * 109.46930 * 240.00081 * 2 1 3 36 36 H 1.08998 * 109.47184 * 120.00003 * 2 1 3 37 37 H 0.96995 * 119.99859 * 354.86665 * 8 7 5 38 38 H 0.96998 * 120.00046 * 95.00274 * 13 3 2 39 39 H 1.08999 * 110.48728 * 25.35551 * 18 16 14 40 40 H 1.09000 * 110.48805 * 148.00241 * 18 16 14 41 41 H 1.09007 * 109.46803 * 60.00506 * 24 22 21 42 42 H 1.09001 * 109.47370 * 179.97438 * 24 22 21 43 43 H 1.08996 * 109.47432 * 300.00647 * 24 22 21 44 44 H 1.07988 * 119.99803 * 359.97438 * 26 25 22 45 45 H 1.08002 * 119.99267 * 180.25551 * 27 26 25 46 46 H 1.08000 * 120.00396 * 179.79178 * 28 27 26 47 47 H 1.08004 * 120.00419 * 180.02562 * 29 28 27 48 48 H 1.08001 * 120.00088 * 179.97438 * 30 29 28 49 49 H 1.09004 * 110.24826 * 258.01765 * 31 21 19 50 50 H 1.08999 * 110.24611 * 136.02240 * 31 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5987 1.9839 -0.8369 5 6 3.5408 1.4447 -0.1358 6 1 4.1550 1.8254 0.6669 7 6 4.1298 0.9608 -1.2846 8 7 5.4046 0.6376 -1.2841 9 14 3.1171 0.7642 -2.8420 10 1 3.9775 0.2292 -3.9277 11 1 2.5713 2.0844 -3.2473 12 1 1.9974 -0.1777 -2.5887 13 7 1.6623 2.0940 1.2566 14 6 0.4459 2.6606 1.3830 15 8 -0.3358 2.6314 0.4562 16 6 0.0576 3.3312 2.6754 17 1 0.7122 4.1771 2.8857 18 6 0.0646 2.3216 3.8466 19 6 -1.3639 1.8291 3.9203 20 8 -1.7257 0.8330 4.5102 21 7 -2.1737 2.6556 3.2362 22 6 -3.6198 2.4672 3.0964 23 1 -4.0410 3.2967 2.5282 24 6 -3.8943 1.1540 2.3608 25 6 -4.2548 2.4202 4.4622 26 6 -5.3535 1.6117 4.6862 27 6 -5.9332 1.5653 5.9403 28 6 -5.4202 2.3345 6.9678 29 6 -4.3245 3.1467 6.7426 30 6 -3.7422 3.1900 5.4896 31 6 -1.4231 3.7706 2.6472 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 -0.3634 0.5138 -0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5138 0.8900 37 1 5.9480 0.8089 -0.4991 38 1 2.2876 2.1177 1.9977 39 1 0.7426 1.4951 3.6337 40 1 0.3457 2.8172 4.7759 41 1 -3.4731 0.3245 2.9290 42 1 -4.9702 1.0135 2.2571 43 1 -3.4350 1.1879 1.3729 44 1 -5.7570 1.0141 3.8823 45 1 -6.7891 0.9305 6.1163 46 1 -5.8752 2.3008 7.9467 47 1 -3.9233 3.7474 7.5456 48 1 -2.8864 3.8248 5.3135 49 1 -1.5599 4.6736 3.2422 50 1 -1.7461 3.9422 1.6204 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183810304.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:00 Heat of formation + Delta-G solvation = -64.833113 kcal Electronic energy + Delta-G solvation = -31336.633811 eV Core-core repulsion = 27327.713045 eV Total energy + Delta-G solvation = -4008.920765 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.11854 -40.61035 -39.69704 -37.55737 -36.84715 -35.62928 -34.45066 -33.24769 -32.02120 -31.40588 -29.90298 -29.04574 -28.64042 -25.43542 -24.68556 -23.98209 -23.26794 -22.41002 -21.84693 -21.07775 -20.04212 -19.78117 -18.52887 -18.02051 -17.50388 -17.23319 -16.69745 -16.48138 -16.05693 -15.75778 -15.66879 -15.42409 -15.09044 -14.90972 -14.77615 -14.55234 -14.54472 -14.32906 -14.28350 -13.86854 -13.75343 -13.56676 -13.26364 -13.10480 -12.99686 -12.77432 -12.71864 -12.61058 -12.49312 -12.44833 -12.29086 -11.86387 -11.81616 -11.79836 -11.41578 -11.10814 -10.80314 -10.63059 -10.45353 -9.83138 -9.78936 -9.76157 -9.52313 -8.78606 -6.42763 0.42953 0.52229 1.45622 1.49395 1.57739 1.68388 1.76888 2.01031 2.41349 2.46578 2.90561 3.01305 3.31167 3.37215 3.70139 3.79070 3.92651 3.95841 4.10143 4.18374 4.24660 4.27340 4.27903 4.36001 4.40472 4.51776 4.54069 4.58598 4.65064 4.68240 4.72610 4.83286 4.84924 4.85318 4.91045 5.06229 5.08642 5.15747 5.16913 5.18393 5.27160 5.52360 5.52563 5.57099 5.62778 5.67873 5.69743 5.73751 6.02503 6.12563 6.15944 6.55073 6.87980 7.18101 7.30341 7.47615 8.60944 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.024474 B = 0.002722 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.806572 B =10284.913234 C =10641.097580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.137 4.137 3 C 0.256 3.744 4 H 0.025 0.975 5 C -0.611 4.611 6 H 0.042 0.958 7 C -0.005 4.005 8 N -0.929 5.929 9 Si 1.070 2.930 10 H -0.286 1.286 11 H -0.270 1.270 12 H -0.248 1.248 13 N -0.702 5.702 14 C 0.505 3.495 15 O -0.572 6.572 16 C -0.113 4.113 17 H 0.162 0.838 18 C -0.143 4.143 19 C 0.511 3.489 20 O -0.566 6.566 21 N -0.606 5.606 22 C 0.195 3.805 23 H 0.120 0.880 24 C -0.160 4.160 25 C -0.099 4.099 26 C -0.125 4.125 27 C -0.129 4.129 28 C -0.131 4.131 29 C -0.130 4.130 30 C -0.117 4.117 31 C 0.116 3.884 32 H 0.045 0.955 33 H 0.045 0.955 34 H 0.043 0.957 35 H 0.057 0.943 36 H 0.048 0.952 37 H 0.258 0.742 38 H 0.403 0.597 39 H 0.093 0.907 40 H 0.148 0.852 41 H 0.042 0.958 42 H 0.091 0.909 43 H 0.051 0.949 44 H 0.132 0.868 45 H 0.140 0.860 46 H 0.141 0.859 47 H 0.138 0.862 48 H 0.124 0.876 49 H 0.118 0.882 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.995 8.920 14.885 27.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.175 4.175 3 C 0.151 3.849 4 H 0.042 0.958 5 C -0.649 4.649 6 H 0.060 0.940 7 C -0.206 4.206 8 N -0.564 5.564 9 Si 0.893 3.107 10 H -0.212 1.212 11 H -0.196 1.196 12 H -0.173 1.173 13 N -0.350 5.350 14 C 0.292 3.708 15 O -0.452 6.452 16 C -0.135 4.135 17 H 0.180 0.820 18 C -0.183 4.183 19 C 0.299 3.701 20 O -0.445 6.445 21 N -0.339 5.339 22 C 0.093 3.907 23 H 0.138 0.862 24 C -0.217 4.217 25 C -0.100 4.100 26 C -0.143 4.143 27 C -0.147 4.147 28 C -0.149 4.149 29 C -0.148 4.148 30 C -0.135 4.135 31 C -0.006 4.006 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.238 0.762 39 H 0.112 0.888 40 H 0.166 0.834 41 H 0.061 0.939 42 H 0.109 0.891 43 H 0.070 0.930 44 H 0.150 0.850 45 H 0.157 0.843 46 H 0.158 0.842 47 H 0.156 0.844 48 H 0.141 0.859 49 H 0.136 0.864 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -21.715 7.834 12.942 26.465 hybrid contribution 1.039 0.198 1.742 2.038 sum -20.676 8.031 14.684 26.601 Atomic orbital electron populations 1.21703 0.95761 0.99757 1.01245 1.22273 0.95067 0.98993 1.01210 1.18660 0.93332 0.89192 0.83765 0.95757 1.22271 0.91564 1.46878 1.04203 0.93983 1.26763 0.97646 0.92149 1.04070 1.70982 1.08758 1.42772 1.33918 0.83742 0.75171 0.78618 0.73199 1.21154 1.19554 1.17300 1.46057 1.15781 1.56157 1.17044 1.20880 0.81429 0.78407 0.90121 1.90651 1.51399 1.60583 1.42609 1.22378 0.99559 1.00510 0.91029 0.82008 1.22432 0.94344 1.00480 1.01034 1.21191 0.89333 0.82229 0.77325 1.90692 1.81040 1.27019 1.45786 1.48402 1.07072 1.26588 1.51836 1.19812 0.78320 0.99437 0.93115 0.86191 1.22156 1.02974 0.96915 0.99692 1.20171 0.96497 0.97620 0.95665 1.21292 0.96287 0.98477 0.98274 1.21423 1.00685 0.99598 0.92955 1.21464 0.96798 0.96686 0.99936 1.21408 0.96586 0.99652 0.97114 1.21074 0.99882 0.99314 0.93227 1.22234 0.87992 0.89343 1.01025 0.93597 0.93614 0.93808 0.92458 0.93304 0.93242 0.76247 0.88839 0.83449 0.93906 0.89063 0.92951 0.84994 0.84253 0.84167 0.84441 0.85851 0.86396 0.89317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.04 8.52 71.98 0.61 -4.43 16 2 C -0.14 -5.96 5.27 30.59 0.16 -5.80 16 3 C 0.26 11.57 1.82 44.25 0.08 11.65 16 4 H 0.02 1.21 6.31 -2.39 -0.02 1.19 16 5 C -0.61 -32.21 9.02 25.60 0.23 -31.98 16 6 H 0.04 2.33 7.97 -2.91 -0.02 2.31 16 7 C -0.01 -0.30 5.30 84.65 0.45 0.15 16 8 N -0.93 -55.54 13.70 21.45 0.29 -55.24 16 9 Si 1.07 49.61 26.29 68.60 1.80 51.42 16 10 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 11 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 12 H -0.25 -10.61 5.64 99.48 0.56 -10.05 16 13 N -0.70 -25.25 4.75 -446.10 -2.12 -27.37 16 14 C 0.50 15.92 5.75 87.66 0.50 16.42 16 15 O -0.57 -21.71 12.65 -3.04 -0.04 -21.75 16 16 C -0.11 -2.20 3.54 -10.48 -0.04 -2.24 16 17 H 0.16 1.92 8.14 -2.39 -0.02 1.90 16 18 C -0.14 -2.90 6.39 30.59 0.20 -2.70 16 19 C 0.51 13.78 6.90 87.90 0.61 14.39 16 20 O -0.57 -20.04 16.03 -3.04 -0.05 -20.08 16 21 N -0.61 -13.41 2.01 -798.21 -1.61 -15.01 16 22 C 0.20 4.10 3.28 44.24 0.15 4.25 16 23 H 0.12 1.99 8.07 -2.38 -0.02 1.97 16 24 C -0.16 -3.76 8.41 71.98 0.61 -3.15 16 25 C -0.10 -2.12 4.74 -19.87 -0.09 -2.21 16 26 C -0.13 -2.53 9.14 22.27 0.20 -2.33 16 27 C -0.13 -2.31 10.05 22.27 0.22 -2.08 16 28 C -0.13 -2.23 10.05 22.27 0.22 -2.01 16 29 C -0.13 -2.33 10.05 22.27 0.22 -2.11 16 30 C -0.12 -2.35 8.85 22.27 0.20 -2.16 16 31 C 0.12 2.03 6.68 86.83 0.58 2.61 16 32 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 33 H 0.04 1.81 5.63 -2.39 -0.01 1.80 16 34 H 0.04 1.78 7.88 -2.39 -0.02 1.76 16 35 H 0.06 2.62 4.65 -2.39 -0.01 2.61 16 36 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.26 15.44 8.73 -92.71 -0.81 14.63 16 38 H 0.40 12.83 8.34 -92.71 -0.77 12.05 16 39 H 0.09 2.22 7.51 -2.39 -0.02 2.20 16 40 H 0.15 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.04 1.26 6.95 -2.38 -0.02 1.25 16 42 H 0.09 1.64 6.55 -2.39 -0.02 1.62 16 43 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.13 2.31 6.07 -2.92 -0.02 2.29 16 45 H 0.14 1.83 8.06 -2.91 -0.02 1.80 16 46 H 0.14 1.67 8.06 -2.91 -0.02 1.64 16 47 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 48 H 0.12 2.18 7.51 -2.91 -0.02 2.16 16 49 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 50 H 0.09 1.84 6.94 -2.39 -0.02 1.82 16 Total: -1.00 -74.17 391.16 3.39 -70.77 By element: Atomic # 1 Polarization: 31.02 SS G_CDS: 0.00 Total: 31.01 kcal Atomic # 6 Polarization: -18.86 SS G_CDS: 5.11 Total: -13.75 kcal Atomic # 7 Polarization: -94.19 SS G_CDS: -3.43 Total: -97.62 kcal Atomic # 8 Polarization: -41.75 SS G_CDS: -0.09 Total: -41.83 kcal Atomic # 14 Polarization: 49.61 SS G_CDS: 1.80 Total: 51.42 kcal Total: -74.17 3.39 -70.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183810304.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.937 kcal (2) G-P(sol) polarization free energy of solvation -74.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds