Wall clock time and date at job start Wed Apr 1 2020 03:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47228 * 2 1 4 4 H 1.09001 * 109.47254 * 54.99694 * 3 2 1 5 5 C 1.50703 * 109.47029 * 174.99577 * 3 2 1 6 6 H 1.08001 * 119.99693 * 119.99848 * 5 3 2 7 7 C 1.37874 * 120.00097 * 300.00014 * 5 3 2 8 8 N 1.31517 * 119.99966 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99864 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47168 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47095 * 120.00076 * 9 7 5 12 12 H 1.48507 * 109.46971 * 239.99709 * 9 7 5 13 13 N 1.46499 * 109.47010 * 294.99762 * 3 2 1 14 14 C 1.34773 * 120.00451 * 84.99667 * 13 3 2 15 15 O 1.21282 * 119.99629 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00458 * 179.97438 * 14 13 3 17 17 F 1.39906 * 110.88622 * 313.88656 * 16 14 13 18 18 C 1.55152 * 111.00578 * 190.00530 * 16 14 13 19 19 C 1.54322 * 102.94115 * 206.38550 * 18 16 14 20 20 N 1.47022 * 107.27133 * 22.19467 * 19 18 16 21 21 C 1.34780 * 125.64634 * 181.02293 * 20 19 18 22 22 O 1.21513 * 119.99577 * 180.02562 * 21 20 19 23 23 O 1.34628 * 120.00286 * 0.02562 * 21 20 19 24 24 C 1.45202 * 117.00407 * 179.97438 * 23 21 20 25 25 C 1.53006 * 109.46867 * 59.99955 * 24 23 21 26 26 C 1.52999 * 109.47019 * 300.00782 * 24 23 21 27 27 C 1.52997 * 109.47464 * 180.02562 * 24 23 21 28 28 C 1.47424 * 108.70411 * 1.28513 * 20 19 18 29 29 H 1.08996 * 109.47584 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47286 * 300.00613 * 1 2 3 31 31 H 1.09004 * 109.46478 * 60.00134 * 1 2 3 32 32 H 1.08997 * 109.46998 * 239.99392 * 2 1 3 33 33 H 1.09004 * 109.46478 * 119.99865 * 2 1 3 34 34 H 0.96998 * 119.99680 * 180.02562 * 8 7 5 35 35 H 0.97001 * 119.99853 * 265.00141 * 13 3 2 36 36 H 1.09004 * 110.72351 * 88.02318 * 18 16 14 37 37 H 1.08996 * 110.87198 * 324.82096 * 18 16 14 38 38 H 1.08996 * 109.88460 * 262.77242 * 19 18 16 39 39 H 1.09007 * 109.88340 * 141.60803 * 19 18 16 40 40 H 1.09001 * 109.46801 * 300.00397 * 25 24 23 41 41 H 1.09001 * 109.46998 * 59.99993 * 25 24 23 42 42 H 1.09000 * 109.47050 * 180.02562 * 25 24 23 43 43 H 1.09000 * 109.47160 * 179.97438 * 26 24 23 44 44 H 1.09002 * 109.46719 * 299.99410 * 26 24 23 45 45 H 1.08993 * 109.47839 * 59.99251 * 26 24 23 46 46 H 1.09001 * 109.47375 * 300.00043 * 27 24 23 47 47 H 1.09002 * 109.46777 * 60.00599 * 27 24 23 48 48 H 1.09000 * 109.47140 * 180.02562 * 27 24 23 49 49 H 1.08993 * 110.36638 * 94.48406 * 28 20 19 50 50 H 1.09001 * 110.36693 * 216.80727 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5420 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1432 0.8783 1.2281 8 7 3.4061 0.3375 2.1734 9 14 6.0049 0.8812 1.3820 10 1 6.5987 1.5461 0.1945 11 1 6.3989 1.6167 2.6104 12 1 6.4970 -0.5176 1.4633 13 7 1.6525 2.0974 -1.2518 14 6 0.4353 2.6643 -1.3672 15 8 -0.3392 2.6326 -0.4343 16 6 0.0369 3.3385 -2.6547 17 9 1.0610 4.1705 -3.1197 18 6 -1.2868 4.1293 -2.4819 19 6 -1.8693 4.1445 -3.9109 20 7 -1.2663 3.0192 -4.6401 21 6 -1.5020 2.7016 -5.9285 22 8 -0.9455 1.7448 -6.4300 23 8 -2.3540 3.4443 -6.6600 24 6 -2.5594 3.0441 -8.0406 25 6 -3.1165 1.6197 -8.0812 26 6 -1.2258 3.0915 -8.7890 27 6 -3.5516 3.9996 -8.7064 28 6 -0.3660 2.2921 -3.7268 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3632 0.5138 -0.8901 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 3.8291 -0.0603 2.9504 35 1 2.2721 2.1230 -1.9978 36 1 -1.0878 5.1436 -2.1358 37 1 -1.9600 3.6146 -1.7965 38 1 -1.6173 5.0834 -4.4040 39 1 -2.9518 4.0231 -3.8713 40 1 -2.4092 0.9393 -7.6070 41 1 -4.0666 1.5858 -7.5479 42 1 -3.2703 1.3191 -9.1176 43 1 -1.3798 2.7907 -9.8253 44 1 -0.8288 4.1062 -8.7601 45 1 -0.5185 2.4111 -8.3149 46 1 -4.5018 3.9662 -8.1733 47 1 -3.1541 5.0142 -8.6775 48 1 -3.7060 3.6989 -9.7427 49 1 -0.8893 1.4549 -3.2652 50 1 0.5154 1.9405 -4.2631 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183882031.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:55 Heat of formation + Delta-G solvation = -165.830099 kcal Electronic energy + Delta-G solvation = -32030.785126 eV Core-core repulsion = 27586.715578 eV Total energy + Delta-G solvation = -4444.069548 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 344.194 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -47.84110 -40.96897 -39.47490 -38.17407 -36.51262 -35.21563 -34.27284 -32.51339 -31.53295 -30.93601 -29.40180 -27.68953 -27.62585 -27.05649 -24.93776 -23.31070 -22.26134 -21.82427 -20.16713 -19.60310 -19.47739 -18.31020 -17.94762 -16.81026 -16.56805 -16.25536 -15.80496 -15.60921 -15.24171 -15.00018 -14.87686 -14.52232 -14.27759 -14.19441 -13.98832 -13.60019 -13.22461 -13.02268 -12.81182 -12.76548 -12.74826 -12.41727 -12.21328 -12.16529 -12.14390 -11.81092 -11.75278 -11.60686 -11.54821 -11.52105 -11.30355 -11.09570 -10.96152 -10.88367 -10.60113 -10.37011 -10.25951 -10.23119 -9.71804 -9.23108 -9.11941 -8.97663 -8.56807 -8.01162 -6.17595 -4.27016 1.78827 2.65021 2.90563 3.21906 3.30164 3.32979 3.50682 3.70219 3.99271 4.07950 4.30972 4.43992 4.48314 4.59497 4.62721 4.81048 4.97249 5.11908 5.14915 5.18187 5.21282 5.26197 5.36385 5.40857 5.45017 5.49550 5.59420 5.61302 5.67603 5.72147 5.82726 5.99070 6.04219 6.09326 6.23859 6.31098 6.35586 6.55527 6.94035 7.08104 7.20266 7.21976 7.28992 7.51620 7.64036 7.80693 8.09383 8.13057 8.44800 8.64398 8.88401 9.40015 10.87793 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.019798 B = 0.002486 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.977222 B =11259.168620 C =11485.142116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.129 4.129 3 C 0.269 3.731 4 H 0.052 0.948 5 C -0.535 4.535 6 H 0.063 0.937 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.902 3.098 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.282 1.282 13 N -0.690 5.690 14 C 0.500 3.500 15 O -0.526 6.526 16 C 0.085 3.915 17 F -0.182 7.182 18 C -0.135 4.135 19 C 0.105 3.895 20 N -0.603 5.603 21 C 0.671 3.329 22 O -0.563 6.563 23 O -0.360 6.360 24 C 0.135 3.865 25 C -0.184 4.184 26 C -0.184 4.184 27 C -0.140 4.140 28 C 0.117 3.883 29 H 0.025 0.975 30 H 0.051 0.949 31 H 0.035 0.965 32 H 0.034 0.966 33 H 0.102 0.898 34 H 0.265 0.735 35 H 0.393 0.607 36 H 0.101 0.899 37 H 0.114 0.886 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.059 0.941 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.060 0.940 45 H 0.088 0.912 46 H 0.066 0.934 47 H 0.066 0.934 48 H 0.080 0.920 49 H 0.097 0.903 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.150 6.760 -18.346 23.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.168 4.168 3 C 0.167 3.833 4 H 0.070 0.930 5 C -0.573 4.573 6 H 0.081 0.919 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.208 1.208 13 N -0.337 5.337 14 C 0.280 3.720 15 O -0.404 6.404 16 C 0.062 3.938 17 F -0.163 7.163 18 C -0.174 4.174 19 C -0.017 4.017 20 N -0.344 5.344 21 C 0.427 3.573 22 O -0.452 6.452 23 O -0.275 6.275 24 C 0.098 3.902 25 C -0.241 4.241 26 C -0.241 4.241 27 C -0.197 4.197 28 C -0.006 4.006 29 H 0.044 0.956 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.120 0.880 34 H 0.075 0.925 35 H 0.226 0.774 36 H 0.120 0.880 37 H 0.133 0.867 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.107 0.893 41 H 0.079 0.921 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.079 0.921 45 H 0.107 0.893 46 H 0.085 0.915 47 H 0.086 0.914 48 H 0.099 0.901 49 H 0.115 0.885 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -13.513 6.335 -17.805 23.232 hybrid contribution 1.405 0.060 -0.365 1.453 sum -12.108 6.395 -18.170 22.752 Atomic orbital electron populations 1.21850 0.98341 0.98308 1.01013 1.21955 0.92597 0.99560 1.02647 1.18921 0.94612 0.89280 0.80438 0.92990 1.21248 0.90487 1.39140 1.06456 0.91871 1.24875 0.98733 0.94683 0.95312 1.69895 1.35120 1.37582 1.09319 0.86383 0.84701 0.77815 0.78177 1.19672 1.20854 1.20837 1.46568 1.13918 1.54133 1.19049 1.19867 0.83961 0.80489 0.87668 1.90718 1.51285 1.59760 1.38619 1.22402 0.87117 0.90644 0.93634 1.92918 1.60620 1.72937 1.89808 1.23153 0.94779 1.02831 0.96604 1.22134 0.98478 0.89570 0.91567 1.47005 1.47426 1.32136 1.07858 1.17377 0.78569 0.80812 0.80548 1.90922 1.53834 1.30088 1.70385 1.86304 1.60190 1.55258 1.25726 1.22100 0.96272 0.95454 0.76340 1.22524 1.02232 0.96144 1.03208 1.22523 0.97301 1.03479 1.00829 1.21853 0.98432 0.99201 1.00198 1.22717 0.94974 0.93736 0.89129 0.95572 0.93020 0.94601 0.94764 0.88016 0.92542 0.77361 0.88023 0.86736 0.90525 0.90207 0.89309 0.92146 0.91110 0.91113 0.92121 0.89308 0.91464 0.91446 0.90118 0.88462 0.88045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 8.52 37.16 0.32 -2.56 16 2 C -0.13 -2.99 5.45 -26.73 -0.15 -3.13 16 3 C 0.27 6.46 2.24 -69.08 -0.15 6.31 16 4 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 5 C -0.53 -13.77 8.73 -34.44 -0.30 -14.07 16 6 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.06 11.30 55.43 0.63 -23.43 16 9 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 10 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 13 N -0.69 -13.71 4.99 -54.93 -0.27 -13.98 16 14 C 0.50 9.12 5.49 -10.99 -0.06 9.06 16 15 O -0.53 -10.89 12.82 5.56 0.07 -10.82 16 16 C 0.08 1.22 1.49 -89.51 -0.13 1.09 16 17 F -0.18 -2.79 16.91 2.25 0.04 -2.75 16 18 C -0.14 -1.58 5.98 -24.90 -0.15 -1.73 16 19 C 0.11 1.09 6.89 -3.06 -0.02 1.07 16 20 N -0.60 -7.74 3.32 -176.16 -0.59 -8.33 16 21 C 0.67 9.23 7.93 54.06 0.43 9.65 16 22 O -0.56 -8.81 12.14 -19.28 -0.23 -9.04 16 23 O -0.36 -4.28 9.49 -40.29 -0.38 -4.66 16 24 C 0.13 1.29 1.13 -90.62 -0.10 1.19 16 25 C -0.18 -1.72 8.37 37.16 0.31 -1.41 16 26 C -0.18 -1.75 8.37 37.16 0.31 -1.44 16 27 C -0.14 -0.93 8.85 37.16 0.33 -0.60 16 28 C 0.12 1.58 6.19 -2.41 -0.01 1.56 16 29 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.05 1.15 7.85 -51.93 -0.41 0.74 16 31 H 0.03 0.70 5.65 -51.93 -0.29 0.41 16 32 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 34 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 35 H 0.39 7.12 8.46 -40.82 -0.35 6.78 16 36 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.11 1.38 7.26 -51.93 -0.38 1.00 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.08 0.71 8.14 -51.92 -0.42 0.29 16 40 H 0.09 1.06 5.88 -51.93 -0.31 0.76 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.09 1.08 5.88 -51.93 -0.31 0.77 16 46 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 47 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.10 1.31 8.04 -51.93 -0.42 0.89 16 50 H 0.10 1.40 8.03 -51.93 -0.42 0.98 16 LS Contribution 397.06 15.07 5.98 5.98 Total: -1.00 -29.73 397.06 -7.44 -37.17 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -8.19 Total: 7.86 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: 0.52 Total: 6.67 kcal Atomic # 7 Polarization: -45.51 SS G_CDS: -0.23 Total: -45.74 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.55 Total: -24.52 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.04 Total: -2.75 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -29.73 -7.44 -37.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183882031.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.661 kcal (2) G-P(sol) polarization free energy of solvation -29.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds