Wall clock time and date at job start Wed Apr 1 2020 03:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47228 * 2 1 4 4 H 1.09001 * 109.47254 * 54.99694 * 3 2 1 5 5 C 1.50703 * 109.47029 * 174.99577 * 3 2 1 6 6 H 1.08001 * 119.99693 * 119.99848 * 5 3 2 7 7 C 1.37874 * 120.00097 * 300.00014 * 5 3 2 8 8 N 1.31517 * 119.99966 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99864 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47168 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47095 * 120.00076 * 9 7 5 12 12 H 1.48507 * 109.46971 * 239.99709 * 9 7 5 13 13 N 1.46499 * 109.47010 * 294.99762 * 3 2 1 14 14 C 1.34773 * 120.00451 * 84.99667 * 13 3 2 15 15 O 1.21282 * 119.99629 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00458 * 179.97438 * 14 13 3 17 17 F 1.39906 * 110.88622 * 313.88656 * 16 14 13 18 18 C 1.55152 * 111.00578 * 190.00530 * 16 14 13 19 19 C 1.54322 * 102.94115 * 206.38550 * 18 16 14 20 20 N 1.47022 * 107.27133 * 22.19467 * 19 18 16 21 21 C 1.34780 * 125.64634 * 181.02293 * 20 19 18 22 22 O 1.21513 * 119.99577 * 180.02562 * 21 20 19 23 23 O 1.34628 * 120.00286 * 0.02562 * 21 20 19 24 24 C 1.45202 * 117.00407 * 179.97438 * 23 21 20 25 25 C 1.53006 * 109.46867 * 59.99955 * 24 23 21 26 26 C 1.52999 * 109.47019 * 300.00782 * 24 23 21 27 27 C 1.52997 * 109.47464 * 180.02562 * 24 23 21 28 28 C 1.47424 * 108.70411 * 1.28513 * 20 19 18 29 29 H 1.08996 * 109.47584 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47286 * 300.00613 * 1 2 3 31 31 H 1.09004 * 109.46478 * 60.00134 * 1 2 3 32 32 H 1.08997 * 109.46998 * 239.99392 * 2 1 3 33 33 H 1.09004 * 109.46478 * 119.99865 * 2 1 3 34 34 H 0.96998 * 119.99680 * 180.02562 * 8 7 5 35 35 H 0.97001 * 119.99853 * 265.00141 * 13 3 2 36 36 H 1.09004 * 110.72351 * 88.02318 * 18 16 14 37 37 H 1.08996 * 110.87198 * 324.82096 * 18 16 14 38 38 H 1.08996 * 109.88460 * 262.77242 * 19 18 16 39 39 H 1.09007 * 109.88340 * 141.60803 * 19 18 16 40 40 H 1.09001 * 109.46801 * 300.00397 * 25 24 23 41 41 H 1.09001 * 109.46998 * 59.99993 * 25 24 23 42 42 H 1.09000 * 109.47050 * 180.02562 * 25 24 23 43 43 H 1.09000 * 109.47160 * 179.97438 * 26 24 23 44 44 H 1.09002 * 109.46719 * 299.99410 * 26 24 23 45 45 H 1.08993 * 109.47839 * 59.99251 * 26 24 23 46 46 H 1.09001 * 109.47375 * 300.00043 * 27 24 23 47 47 H 1.09002 * 109.46777 * 60.00599 * 27 24 23 48 48 H 1.09000 * 109.47140 * 180.02562 * 27 24 23 49 49 H 1.08993 * 110.36638 * 94.48406 * 28 20 19 50 50 H 1.09001 * 110.36693 * 216.80727 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5420 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1432 0.8783 1.2281 8 7 3.4061 0.3375 2.1734 9 14 6.0049 0.8812 1.3820 10 1 6.5987 1.5461 0.1945 11 1 6.3989 1.6167 2.6104 12 1 6.4970 -0.5176 1.4633 13 7 1.6525 2.0974 -1.2518 14 6 0.4353 2.6643 -1.3672 15 8 -0.3392 2.6326 -0.4343 16 6 0.0369 3.3385 -2.6547 17 9 1.0610 4.1705 -3.1197 18 6 -1.2868 4.1293 -2.4819 19 6 -1.8693 4.1445 -3.9109 20 7 -1.2663 3.0192 -4.6401 21 6 -1.5020 2.7016 -5.9285 22 8 -0.9455 1.7448 -6.4300 23 8 -2.3540 3.4443 -6.6600 24 6 -2.5594 3.0441 -8.0406 25 6 -3.1165 1.6197 -8.0812 26 6 -1.2258 3.0915 -8.7890 27 6 -3.5516 3.9996 -8.7064 28 6 -0.3660 2.2921 -3.7268 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3632 0.5138 -0.8901 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 3.8291 -0.0603 2.9504 35 1 2.2721 2.1230 -1.9978 36 1 -1.0878 5.1436 -2.1358 37 1 -1.9600 3.6146 -1.7965 38 1 -1.6173 5.0834 -4.4040 39 1 -2.9518 4.0231 -3.8713 40 1 -2.4092 0.9393 -7.6070 41 1 -4.0666 1.5858 -7.5479 42 1 -3.2703 1.3191 -9.1176 43 1 -1.3798 2.7907 -9.8253 44 1 -0.8288 4.1062 -8.7601 45 1 -0.5185 2.4111 -8.3149 46 1 -4.5018 3.9662 -8.1733 47 1 -3.1541 5.0142 -8.6775 48 1 -3.7060 3.6989 -9.7427 49 1 -0.8893 1.4549 -3.2652 50 1 0.5154 1.9405 -4.2631 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183882031.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:54 Heat of formation + Delta-G solvation = -183.816062 kcal Electronic energy + Delta-G solvation = -32031.565056 eV Core-core repulsion = 27586.715578 eV Total energy + Delta-G solvation = -4444.849478 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 344.194 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -49.06800 -41.93047 -40.92663 -39.24760 -37.57585 -36.95146 -35.08136 -34.37372 -33.00535 -32.30770 -30.51705 -28.89540 -28.35232 -28.27130 -26.14171 -25.02934 -23.57059 -22.71572 -21.73256 -21.12358 -20.51310 -19.62240 -19.08471 -18.15338 -17.63343 -17.50723 -17.32496 -16.98136 -16.52233 -16.12979 -16.01826 -15.85569 -15.73412 -15.32199 -14.96901 -14.75747 -14.61907 -14.19638 -14.11192 -13.97673 -13.80911 -13.48284 -13.33938 -13.21041 -13.11047 -12.95255 -12.91987 -12.86010 -12.82132 -12.71562 -12.60792 -12.40706 -12.31630 -12.20781 -12.15597 -12.01168 -11.58533 -11.40623 -11.18897 -11.06851 -10.78270 -10.54216 -9.97272 -9.76157 -8.17942 -6.34455 0.82351 1.42312 1.43517 1.46064 1.56213 1.63758 2.14718 2.43519 2.67937 2.89437 3.02486 3.12005 3.42933 3.68251 3.75974 3.81023 3.85927 3.95783 4.06393 4.29143 4.47406 4.48196 4.51329 4.57978 4.61616 4.63268 4.68005 4.75094 4.78279 4.81208 4.86175 4.89766 4.90088 5.03190 5.05481 5.16195 5.26438 5.29743 5.34482 5.41333 5.41709 5.47604 5.58066 5.76073 5.85874 6.14912 6.22928 6.70910 6.76657 7.13175 7.21591 7.39540 8.87298 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.019798 B = 0.002486 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.977222 B =11259.168620 C =11485.142116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.122 4.122 3 C 0.278 3.722 4 H 0.008 0.992 5 C -0.549 4.549 6 H 0.067 0.933 7 C 0.019 3.981 8 N -0.911 5.911 9 Si 0.966 3.034 10 H -0.264 1.264 11 H -0.283 1.283 12 H -0.279 1.279 13 N -0.693 5.693 14 C 0.500 3.500 15 O -0.550 6.550 16 C 0.093 3.907 17 F -0.185 7.185 18 C -0.129 4.129 19 C 0.109 3.891 20 N -0.605 5.605 21 C 0.668 3.332 22 O -0.588 6.588 23 O -0.359 6.359 24 C 0.123 3.877 25 C -0.180 4.180 26 C -0.181 4.181 27 C -0.134 4.134 28 C 0.121 3.879 29 H 0.046 0.954 30 H 0.031 0.969 31 H 0.045 0.955 32 H 0.040 0.960 33 H 0.074 0.926 34 H 0.266 0.734 35 H 0.403 0.597 36 H 0.116 0.884 37 H 0.112 0.888 38 H 0.091 0.909 39 H 0.101 0.899 40 H 0.058 0.942 41 H 0.063 0.937 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.062 0.938 45 H 0.058 0.942 46 H 0.071 0.929 47 H 0.070 0.930 48 H 0.103 0.897 49 H 0.098 0.902 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.974 7.782 -20.474 25.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.161 4.161 3 C 0.175 3.825 4 H 0.026 0.974 5 C -0.588 4.588 6 H 0.086 0.914 7 C -0.181 4.181 8 N -0.549 5.549 9 Si 0.792 3.208 10 H -0.188 1.188 11 H -0.209 1.209 12 H -0.204 1.204 13 N -0.340 5.340 14 C 0.283 3.717 15 O -0.429 6.429 16 C 0.070 3.930 17 F -0.166 7.166 18 C -0.167 4.167 19 C -0.013 4.013 20 N -0.347 5.347 21 C 0.424 3.576 22 O -0.479 6.479 23 O -0.274 6.274 24 C 0.087 3.913 25 C -0.238 4.238 26 C -0.238 4.238 27 C -0.191 4.191 28 C -0.002 4.002 29 H 0.065 0.935 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.092 0.908 34 H 0.075 0.925 35 H 0.237 0.763 36 H 0.134 0.866 37 H 0.130 0.870 38 H 0.109 0.891 39 H 0.119 0.881 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.111 0.889 43 H 0.111 0.889 44 H 0.081 0.919 45 H 0.077 0.923 46 H 0.090 0.910 47 H 0.089 0.911 48 H 0.122 0.878 49 H 0.116 0.884 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -14.357 7.387 -19.966 25.677 hybrid contribution 1.622 -0.241 0.271 1.662 sum -12.735 7.146 -19.695 24.518 Atomic orbital electron populations 1.21700 0.96572 0.99466 1.00490 1.21797 0.94118 0.98742 1.01491 1.18495 0.93759 0.89432 0.80834 0.97408 1.21573 0.91491 1.39012 1.06680 0.91439 1.25685 1.03025 0.94359 0.95041 1.70028 1.36847 1.38254 1.09794 0.85380 0.79500 0.77833 0.78136 1.18841 1.20875 1.20430 1.46361 1.15044 1.54594 1.18038 1.20438 0.82868 0.79651 0.88785 1.90708 1.51802 1.60398 1.40030 1.22232 0.87977 0.91144 0.91645 1.92916 1.61089 1.72945 1.89639 1.23196 0.92793 1.03060 0.97635 1.22271 0.99461 0.89312 0.90244 1.47033 1.47260 1.32606 1.07763 1.17515 0.78636 0.80706 0.80738 1.90918 1.54781 1.31204 1.70978 1.86320 1.59400 1.54853 1.26801 1.22498 0.97035 0.96439 0.75340 1.22482 1.01406 0.95507 1.04360 1.22485 0.96684 1.02795 1.01852 1.21877 0.97538 0.98537 1.01111 1.22576 0.95148 0.93476 0.88984 0.93510 0.94967 0.93592 0.94102 0.90796 0.92514 0.76286 0.86599 0.86971 0.89105 0.88094 0.92273 0.91792 0.88898 0.88868 0.91930 0.92297 0.91014 0.91114 0.87843 0.88410 0.88577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.25 8.52 71.98 0.61 -4.64 16 2 C -0.12 -5.80 5.45 30.59 0.17 -5.63 16 3 C 0.28 13.73 2.24 44.25 0.10 13.82 16 4 H 0.01 0.47 7.58 -2.39 -0.02 0.45 16 5 C -0.55 -28.68 8.73 25.60 0.22 -28.45 16 6 H 0.07 3.38 7.74 -2.91 -0.02 3.36 16 7 C 0.02 1.03 5.29 84.65 0.45 1.48 16 8 N -0.91 -50.91 11.30 21.45 0.24 -50.67 16 9 Si 0.97 41.90 29.54 68.60 2.03 43.93 16 10 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 11 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 12 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 13 N -0.69 -27.82 4.99 -446.10 -2.23 -30.05 16 14 C 0.50 18.25 5.49 87.66 0.48 18.73 16 15 O -0.55 -23.01 12.82 -3.03 -0.04 -23.05 16 16 C 0.09 2.58 1.49 -10.07 -0.01 2.56 16 17 F -0.19 -5.45 16.91 44.97 0.76 -4.69 16 18 C -0.13 -2.76 5.98 31.78 0.19 -2.57 16 19 C 0.11 1.99 6.89 86.73 0.60 2.59 16 20 N -0.61 -14.70 3.32 -941.66 -3.13 -17.83 16 21 C 0.67 17.75 7.93 129.79 1.03 18.78 16 22 O -0.59 -18.43 12.14 19.80 0.24 -18.19 16 23 O -0.36 -7.95 9.49 -55.38 -0.53 -8.47 16 24 C 0.12 2.12 1.13 -10.79 -0.01 2.11 16 25 C -0.18 -3.12 8.37 71.98 0.60 -2.51 16 26 C -0.18 -3.19 8.37 71.98 0.60 -2.59 16 27 C -0.13 -1.37 8.85 71.98 0.64 -0.73 16 28 C 0.12 3.18 6.19 86.93 0.54 3.72 16 29 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.03 1.45 7.85 -2.38 -0.02 1.43 16 31 H 0.05 1.80 5.65 -2.39 -0.01 1.79 16 32 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.07 3.95 5.95 -2.39 -0.01 3.93 16 34 H 0.27 14.06 8.31 -92.71 -0.77 13.29 16 35 H 0.40 14.61 8.46 -92.71 -0.78 13.82 16 36 H 0.12 2.18 8.14 -2.38 -0.02 2.16 16 37 H 0.11 2.52 7.26 -2.39 -0.02 2.50 16 38 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 40 H 0.06 1.41 5.88 -2.39 -0.01 1.39 16 41 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.06 1.42 5.88 -2.39 -0.01 1.41 16 46 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 49 H 0.10 2.56 8.04 -2.39 -0.02 2.54 16 50 H 0.10 2.63 8.03 -2.39 -0.02 2.61 16 Total: -1.00 -65.67 397.06 3.71 -61.96 By element: Atomic # 1 Polarization: 30.25 SS G_CDS: 0.16 Total: 30.41 kcal Atomic # 6 Polarization: 10.46 SS G_CDS: 6.20 Total: 16.67 kcal Atomic # 7 Polarization: -93.44 SS G_CDS: -5.12 Total: -98.55 kcal Atomic # 8 Polarization: -49.39 SS G_CDS: -0.32 Total: -49.71 kcal Atomic # 9 Polarization: -5.45 SS G_CDS: 0.76 Total: -4.69 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Total: -65.67 3.71 -61.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183882031.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.861 kcal (2) G-P(sol) polarization free energy of solvation -65.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds