Wall clock time and date at job start Wed Apr 1 2020 03:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47263 * 2 1 4 4 H 1.09001 * 109.46979 * 55.00078 * 3 2 1 5 5 C 1.50701 * 109.47211 * 174.99830 * 3 2 1 6 6 H 1.08000 * 120.00020 * 120.00394 * 5 3 2 7 7 C 1.37879 * 120.00113 * 300.00129 * 5 3 2 8 8 N 1.31518 * 119.99874 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 119.99958 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47534 * 90.00185 * 9 7 5 11 11 H 1.48501 * 109.47336 * 209.99853 * 9 7 5 12 12 H 1.48498 * 109.47317 * 329.99719 * 9 7 5 13 13 N 1.46497 * 109.46922 * 295.00284 * 3 2 1 14 14 C 1.34776 * 120.00443 * 84.99962 * 13 3 2 15 15 O 1.21283 * 119.99563 * 359.97438 * 14 13 3 16 16 C 1.50697 * 120.00045 * 180.02562 * 14 13 3 17 17 H 1.09003 * 110.21710 * 301.92462 * 16 14 13 18 18 C 1.54480 * 110.32257 * 63.90548 * 16 14 13 19 19 C 1.54784 * 101.69261 * 93.42843 * 18 16 14 20 20 C 1.51278 * 104.12065 * 25.10317 * 19 18 16 21 21 O 1.21283 * 124.94441 * 163.67549 * 20 19 18 22 22 N 1.34420 * 110.11582 * 343.40725 * 20 19 18 23 23 C 1.46502 * 124.35242 * 179.80107 * 22 20 19 24 24 C 1.50703 * 109.46961 * 90.02285 * 23 22 20 25 25 C 1.38241 * 120.00093 * 269.72777 * 24 23 22 26 26 C 1.38229 * 119.99630 * 179.76903 * 25 24 23 27 27 C 1.38230 * 120.00458 * 0.48091 * 26 25 24 28 28 C 1.50703 * 120.00123 * 179.76899 * 27 26 25 29 29 C 1.38236 * 119.99825 * 359.79920 * 27 26 25 30 30 C 1.38233 * 120.00095 * 359.94659 * 29 27 26 31 31 H 1.08997 * 109.47096 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47269 * 300.00181 * 1 2 3 33 33 H 1.09005 * 109.46888 * 60.00230 * 1 2 3 34 34 H 1.09004 * 109.47734 * 240.00207 * 2 1 3 35 35 H 1.09001 * 109.47593 * 119.99823 * 2 1 3 36 36 H 0.97000 * 119.99739 * 180.02562 * 8 7 5 37 37 H 0.97005 * 119.99887 * 264.99744 * 13 3 2 38 38 H 1.08997 * 110.97191 * 211.74142 * 18 16 14 39 39 H 1.09008 * 110.96860 * 335.46651 * 18 16 14 40 40 H 1.08996 * 110.61291 * 266.40068 * 19 18 16 41 41 H 1.09001 * 110.42713 * 143.71017 * 19 18 16 42 42 H 1.08993 * 109.47522 * 210.02496 * 23 22 20 43 43 H 1.08998 * 109.46856 * 330.02675 * 23 22 20 44 44 H 1.08001 * 119.99506 * 0.02562 * 25 24 23 45 45 H 1.08006 * 119.99841 * 180.25732 * 26 25 24 46 46 H 1.08997 * 109.47151 * 270.02362 * 28 27 26 47 47 H 1.08993 * 109.47175 * 30.02655 * 28 27 26 48 48 H 1.08998 * 109.47018 * 150.02721 * 28 27 26 49 49 H 1.07998 * 119.99780 * 179.97438 * 29 27 26 50 50 H 1.07997 * 120.00388 * 180.02562 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8890 -0.6522 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0048 0.8813 1.3819 10 1 6.4416 2.1142 2.0851 11 1 6.4395 -0.3097 2.1550 12 1 6.6135 0.8416 0.0279 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3670 15 8 -0.3396 2.6320 -0.4344 16 6 0.0362 3.3376 -2.6548 17 1 0.7401 4.1338 -2.8974 18 6 -0.0213 2.3066 -3.8038 19 6 -1.5137 1.8966 -3.7828 20 6 -2.2151 3.0876 -3.1679 21 8 -3.4085 3.2960 -3.2239 22 7 -1.3239 3.8782 -2.5454 23 6 -1.6661 5.1201 -1.8476 24 6 -1.9764 4.8163 -0.4045 25 6 -3.2724 4.5230 -0.0231 26 6 -3.5562 4.2398 1.2997 27 6 -2.5459 4.2595 2.2430 28 6 -2.8562 3.9557 3.6861 29 6 -1.2509 4.5584 1.8626 30 6 -0.9662 4.8366 0.5388 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 3.8292 -0.0612 2.9498 37 1 2.2719 2.1232 -1.9978 38 1 0.2472 2.7667 -4.7547 39 1 0.6196 1.4506 -3.5922 40 1 -1.6591 1.0087 -3.1676 41 1 -1.8748 1.7228 -4.7965 42 1 -0.8244 5.8105 -1.9007 43 1 -2.5380 5.5733 -2.3192 44 1 -4.0624 4.5112 -0.7595 45 1 -4.5680 4.0065 1.5970 46 1 -3.1109 4.8797 4.2052 47 1 -3.6979 3.2653 3.7391 48 1 -1.9843 3.5025 4.1576 49 1 -0.4617 4.5742 2.5996 50 1 0.0456 5.0697 0.2415 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183905253.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:16 Heat of formation + Delta-G solvation = -46.776788 kcal Electronic energy + Delta-G solvation = -32194.171851 eV Core-core repulsion = 28186.034067 eV Total energy + Delta-G solvation = -4008.137784 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -40.84042 -38.83042 -38.54788 -36.14947 -34.91158 -34.09567 -32.40021 -31.50627 -30.99044 -30.46046 -28.22312 -27.90517 -26.64464 -24.58442 -23.25353 -22.60153 -22.19875 -20.70606 -20.45247 -19.37926 -19.09274 -17.65291 -16.88224 -16.15192 -15.76586 -15.67677 -15.20559 -15.03748 -14.83133 -14.65558 -14.31128 -14.13501 -13.63186 -13.45541 -13.27281 -13.12290 -12.98833 -12.76405 -12.70708 -12.45836 -12.31694 -12.12935 -11.68496 -11.60126 -11.52309 -11.31571 -11.28132 -11.13415 -10.98997 -10.95445 -10.86058 -10.52966 -10.35464 -10.21686 -9.75109 -9.65999 -9.35648 -9.09096 -8.58825 -8.45893 -8.38802 -8.06402 -7.73228 -6.16906 -4.26585 1.67457 1.92559 2.69382 3.07850 3.19949 3.27107 3.28112 3.29807 4.01502 4.26669 4.32917 4.33137 4.48430 4.80940 5.00558 5.07080 5.10530 5.15131 5.27421 5.31646 5.34764 5.41271 5.50156 5.61203 5.61983 5.71586 5.78361 5.79105 5.86612 5.91445 6.06739 6.13200 6.36180 6.42486 6.47809 6.49775 6.54084 6.63531 6.85057 6.98024 6.99604 7.03897 7.15667 7.21978 7.33647 7.41904 7.47462 7.57847 7.69153 7.86043 8.14424 8.26422 8.62357 8.73824 9.09827 9.41337 10.87980 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010120 B = 0.004442 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2766.067668 B = 6301.628302 C = 7978.503198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.126 4.126 3 C 0.276 3.724 4 H 0.048 0.952 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.708 5.708 14 C 0.479 3.521 15 O -0.509 6.509 16 C 0.107 3.893 17 H 0.105 0.895 18 C -0.122 4.122 19 C -0.155 4.155 20 C 0.526 3.474 21 O -0.536 6.536 22 N -0.587 5.587 23 C 0.171 3.829 24 C -0.105 4.105 25 C -0.095 4.095 26 C -0.134 4.134 27 C -0.081 4.081 28 C -0.112 4.112 29 C -0.115 4.115 30 C -0.047 4.047 31 H 0.019 0.981 32 H 0.048 0.952 33 H 0.037 0.963 34 H 0.029 0.971 35 H 0.097 0.903 36 H 0.264 0.736 37 H 0.386 0.614 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.105 0.895 41 H 0.101 0.899 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.115 0.885 45 H 0.111 0.889 46 H 0.064 0.936 47 H 0.061 0.939 48 H 0.066 0.934 49 H 0.115 0.885 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.158 7.410 -8.174 13.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.165 4.165 3 C 0.174 3.826 4 H 0.066 0.934 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.357 5.357 14 C 0.261 3.739 15 O -0.385 6.385 16 C -0.002 4.002 17 H 0.123 0.877 18 C -0.160 4.160 19 C -0.195 4.195 20 C 0.314 3.686 21 O -0.413 6.413 22 N -0.319 5.319 23 C 0.050 3.950 24 C -0.106 4.106 25 C -0.114 4.114 26 C -0.152 4.152 27 C -0.082 4.082 28 C -0.169 4.169 29 C -0.133 4.133 30 C -0.065 4.065 31 H 0.038 0.962 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.048 0.952 35 H 0.115 0.885 36 H 0.074 0.926 37 H 0.218 0.782 38 H 0.108 0.892 39 H 0.115 0.885 40 H 0.123 0.877 41 H 0.119 0.881 42 H 0.100 0.900 43 H 0.105 0.895 44 H 0.133 0.867 45 H 0.129 0.871 46 H 0.082 0.918 47 H 0.080 0.920 48 H 0.085 0.915 49 H 0.133 0.867 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -8.353 7.466 -7.289 13.366 hybrid contribution 1.562 -0.293 -0.108 1.593 sum -6.790 7.173 -7.397 12.340 Atomic orbital electron populations 1.21803 0.98271 0.97830 1.01164 1.21924 0.92532 0.99924 1.02111 1.18715 0.93939 0.89009 0.80903 0.93387 1.21224 0.90809 1.39038 1.06214 0.92200 1.24868 0.98430 0.94809 0.95455 1.69895 1.35083 1.37529 1.09313 0.86500 0.85060 0.77648 0.78190 1.20627 1.21117 1.19866 1.46479 1.14469 1.56225 1.18528 1.20577 0.83404 0.80684 0.89192 1.90806 1.50705 1.57594 1.39388 1.21764 0.85367 0.97659 0.95381 0.87684 1.22636 0.96736 0.98994 0.97605 1.22364 0.95455 0.98302 1.03343 1.20776 0.86134 0.83891 0.77813 1.90682 1.14017 1.74907 1.61703 1.47982 1.07350 1.23695 1.52892 1.20231 1.01350 0.84393 0.88987 1.19822 0.93738 1.02437 0.94648 1.20886 0.96077 0.98709 0.95693 1.20808 0.98339 1.02845 0.93177 1.19805 0.93681 0.99110 0.95556 1.20761 1.02162 1.01153 0.92815 1.20847 0.95624 1.00578 0.96279 1.20651 0.97350 0.95953 0.92577 0.96170 0.93266 0.94354 0.95207 0.88486 0.92594 0.78206 0.89185 0.88453 0.87676 0.88080 0.90010 0.89487 0.86728 0.87072 0.91764 0.92009 0.91538 0.86728 0.87381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 8.51 37.15 0.32 -2.54 16 2 C -0.13 -2.88 5.45 -26.73 -0.15 -3.03 16 3 C 0.28 6.33 2.24 -69.08 -0.15 6.18 16 4 H 0.05 1.30 7.58 -51.93 -0.39 0.91 16 5 C -0.53 -13.17 8.73 -34.44 -0.30 -13.47 16 6 H 0.06 1.41 7.74 -52.49 -0.41 1.01 16 7 C 0.07 1.73 5.29 -17.82 -0.09 1.64 16 8 N -0.88 -23.77 11.29 55.43 0.63 -23.14 16 9 Si 0.90 19.81 29.54 -169.99 -5.02 14.79 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 11 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 13 N -0.71 -12.58 4.78 -54.93 -0.26 -12.84 16 14 C 0.48 7.97 5.66 -10.99 -0.06 7.91 16 15 O -0.51 -10.13 9.20 5.55 0.05 -10.08 16 16 C 0.11 1.31 3.49 -68.16 -0.24 1.08 16 17 H 0.11 1.05 8.14 -51.93 -0.42 0.62 16 18 C -0.12 -1.19 6.69 -25.01 -0.17 -1.36 16 19 C -0.15 -1.81 6.86 -26.66 -0.18 -1.99 16 20 C 0.53 7.93 8.02 -10.86 -0.09 7.85 16 21 O -0.54 -9.77 17.60 5.55 0.10 -9.67 16 22 N -0.59 -8.08 2.25 -167.56 -0.38 -8.46 16 23 C 0.17 2.27 6.05 -5.19 -0.03 2.24 16 24 C -0.11 -1.64 4.38 -104.62 -0.46 -2.10 16 25 C -0.09 -1.53 9.70 -39.58 -0.38 -1.91 16 26 C -0.13 -2.09 9.70 -39.59 -0.38 -2.48 16 27 C -0.08 -1.29 5.88 -104.62 -0.62 -1.90 16 28 C -0.11 -1.47 10.01 36.01 0.36 -1.11 16 29 C -0.12 -1.95 9.70 -39.58 -0.38 -2.33 16 30 C -0.05 -0.77 6.71 -39.58 -0.27 -1.04 16 31 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 1.16 7.85 -51.93 -0.41 0.75 16 33 H 0.04 0.78 5.64 -51.93 -0.29 0.49 16 34 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.10 2.52 5.95 -51.93 -0.31 2.21 16 36 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 37 H 0.39 5.88 8.52 -40.82 -0.35 5.53 16 38 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.10 0.96 7.68 -51.92 -0.40 0.56 16 40 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.08 0.89 8.08 -51.93 -0.42 0.47 16 43 H 0.09 1.11 7.87 -51.93 -0.41 0.70 16 44 H 0.11 1.82 8.06 -52.49 -0.42 1.39 16 45 H 0.11 1.52 8.06 -52.48 -0.42 1.09 16 46 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.06 0.75 8.09 -51.93 -0.42 0.33 16 48 H 0.07 0.89 8.09 -51.93 -0.42 0.47 16 49 H 0.11 1.89 8.06 -52.49 -0.42 1.47 16 50 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 LS Contribution 399.68 15.07 6.02 6.02 Total: -1.00 -30.84 399.68 -10.15 -40.99 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -8.01 Total: 10.76 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -3.28 Total: -8.37 kcal Atomic # 7 Polarization: -44.43 SS G_CDS: -0.01 Total: -44.44 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: 0.15 Total: -19.75 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -30.84 -10.15 -40.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183905253.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.788 kcal (2) G-P(sol) polarization free energy of solvation -30.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds