Wall clock time and date at job start Wed Apr 1 2020 03:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47263 * 2 1 4 4 H 1.09001 * 109.46979 * 55.00078 * 3 2 1 5 5 C 1.50701 * 109.47211 * 174.99830 * 3 2 1 6 6 H 1.08000 * 120.00020 * 120.00394 * 5 3 2 7 7 C 1.37879 * 120.00113 * 300.00129 * 5 3 2 8 8 N 1.31518 * 119.99874 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 119.99958 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47534 * 90.00185 * 9 7 5 11 11 H 1.48501 * 109.47336 * 209.99853 * 9 7 5 12 12 H 1.48498 * 109.47317 * 329.99719 * 9 7 5 13 13 N 1.46497 * 109.46922 * 295.00284 * 3 2 1 14 14 C 1.34776 * 120.00443 * 84.99962 * 13 3 2 15 15 O 1.21283 * 119.99563 * 359.97438 * 14 13 3 16 16 C 1.50697 * 120.00045 * 180.02562 * 14 13 3 17 17 H 1.09003 * 110.21710 * 301.92462 * 16 14 13 18 18 C 1.54480 * 110.32257 * 63.90548 * 16 14 13 19 19 C 1.54784 * 101.69261 * 93.42843 * 18 16 14 20 20 C 1.51278 * 104.12065 * 25.10317 * 19 18 16 21 21 O 1.21283 * 124.94441 * 163.67549 * 20 19 18 22 22 N 1.34420 * 110.11582 * 343.40725 * 20 19 18 23 23 C 1.46502 * 124.35242 * 179.80107 * 22 20 19 24 24 C 1.50703 * 109.46961 * 90.02285 * 23 22 20 25 25 C 1.38241 * 120.00093 * 269.72777 * 24 23 22 26 26 C 1.38229 * 119.99630 * 179.76903 * 25 24 23 27 27 C 1.38230 * 120.00458 * 0.48091 * 26 25 24 28 28 C 1.50703 * 120.00123 * 179.76899 * 27 26 25 29 29 C 1.38236 * 119.99825 * 359.79920 * 27 26 25 30 30 C 1.38233 * 120.00095 * 359.94659 * 29 27 26 31 31 H 1.08997 * 109.47096 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47269 * 300.00181 * 1 2 3 33 33 H 1.09005 * 109.46888 * 60.00230 * 1 2 3 34 34 H 1.09004 * 109.47734 * 240.00207 * 2 1 3 35 35 H 1.09001 * 109.47593 * 119.99823 * 2 1 3 36 36 H 0.97000 * 119.99739 * 180.02562 * 8 7 5 37 37 H 0.97005 * 119.99887 * 264.99744 * 13 3 2 38 38 H 1.08997 * 110.97191 * 211.74142 * 18 16 14 39 39 H 1.09008 * 110.96860 * 335.46651 * 18 16 14 40 40 H 1.08996 * 110.61291 * 266.40068 * 19 18 16 41 41 H 1.09001 * 110.42713 * 143.71017 * 19 18 16 42 42 H 1.08993 * 109.47522 * 210.02496 * 23 22 20 43 43 H 1.08998 * 109.46856 * 330.02675 * 23 22 20 44 44 H 1.08001 * 119.99506 * 0.02562 * 25 24 23 45 45 H 1.08006 * 119.99841 * 180.25732 * 26 25 24 46 46 H 1.08997 * 109.47151 * 270.02362 * 28 27 26 47 47 H 1.08993 * 109.47175 * 30.02655 * 28 27 26 48 48 H 1.08998 * 109.47018 * 150.02721 * 28 27 26 49 49 H 1.07998 * 119.99780 * 179.97438 * 29 27 26 50 50 H 1.07997 * 120.00388 * 180.02562 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8890 -0.6522 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0048 0.8813 1.3819 10 1 6.4416 2.1142 2.0851 11 1 6.4395 -0.3097 2.1550 12 1 6.6135 0.8416 0.0279 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3670 15 8 -0.3396 2.6320 -0.4344 16 6 0.0362 3.3376 -2.6548 17 1 0.7401 4.1338 -2.8974 18 6 -0.0213 2.3066 -3.8038 19 6 -1.5137 1.8966 -3.7828 20 6 -2.2151 3.0876 -3.1679 21 8 -3.4085 3.2960 -3.2239 22 7 -1.3239 3.8782 -2.5454 23 6 -1.6661 5.1201 -1.8476 24 6 -1.9764 4.8163 -0.4045 25 6 -3.2724 4.5230 -0.0231 26 6 -3.5562 4.2398 1.2997 27 6 -2.5459 4.2595 2.2430 28 6 -2.8562 3.9557 3.6861 29 6 -1.2509 4.5584 1.8626 30 6 -0.9662 4.8366 0.5388 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 3.8292 -0.0612 2.9498 37 1 2.2719 2.1232 -1.9978 38 1 0.2472 2.7667 -4.7547 39 1 0.6196 1.4506 -3.5922 40 1 -1.6591 1.0087 -3.1676 41 1 -1.8748 1.7228 -4.7965 42 1 -0.8244 5.8105 -1.9007 43 1 -2.5380 5.5733 -2.3192 44 1 -4.0624 4.5112 -0.7595 45 1 -4.5680 4.0065 1.5970 46 1 -3.1109 4.8797 4.2052 47 1 -3.6979 3.2653 3.7391 48 1 -1.9843 3.5025 4.1576 49 1 -0.4617 4.5742 2.5996 50 1 0.0456 5.0697 0.2415 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183905253.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:15 Heat of formation + Delta-G solvation = -63.749637 kcal Electronic energy + Delta-G solvation = -32194.907849 eV Core-core repulsion = 28186.034067 eV Total energy + Delta-G solvation = -4008.873782 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -41.98112 -40.09936 -39.90025 -37.45307 -36.51615 -35.20966 -34.14661 -32.81820 -32.48448 -31.72727 -29.58330 -29.00138 -28.25094 -25.68752 -25.00072 -23.77095 -23.46376 -22.05333 -21.80684 -20.95576 -20.27712 -19.08551 -18.03336 -17.70614 -17.14587 -16.93849 -16.59755 -16.43493 -16.13244 -15.94293 -15.70537 -15.60224 -14.85714 -14.59854 -14.53499 -14.43076 -14.28030 -14.26624 -13.95044 -13.63454 -13.43442 -13.39977 -13.34643 -13.13416 -12.86456 -12.76855 -12.67556 -12.62357 -12.24813 -12.17258 -12.12228 -12.09384 -11.98304 -11.77070 -11.51732 -10.99497 -10.90338 -10.67646 -10.47512 -9.74259 -9.70541 -9.42993 -9.15466 -8.11131 -6.27276 0.44418 0.63438 1.46011 1.47489 1.53988 1.56865 1.98965 2.02767 2.41113 2.77840 3.03531 3.19120 3.35154 3.56214 3.90859 3.91300 3.98106 4.07705 4.12092 4.17200 4.21328 4.32859 4.47822 4.53542 4.56095 4.58042 4.61169 4.69065 4.77226 4.80518 4.82679 4.88886 4.95853 5.01547 5.06271 5.14927 5.24405 5.31014 5.31649 5.47447 5.50213 5.59204 5.62923 5.73385 5.73823 5.77940 5.88102 6.02174 6.12909 6.22962 6.25138 6.83520 7.10866 7.19416 7.41197 7.77443 8.93299 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010120 B = 0.004442 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2766.067668 B = 6301.628302 C = 7978.503198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.118 4.118 3 C 0.290 3.710 4 H -0.003 1.003 5 C -0.540 4.540 6 H 0.073 0.927 7 C 0.017 3.983 8 N -0.916 5.916 9 Si 0.961 3.039 10 H -0.281 1.281 11 H -0.290 1.290 12 H -0.258 1.258 13 N -0.703 5.703 14 C 0.476 3.524 15 O -0.544 6.544 16 C 0.111 3.889 17 H 0.142 0.858 18 C -0.108 4.108 19 C -0.152 4.152 20 C 0.514 3.486 21 O -0.575 6.575 22 N -0.585 5.585 23 C 0.168 3.832 24 C -0.106 4.106 25 C -0.108 4.108 26 C -0.142 4.142 27 C -0.092 4.092 28 C -0.109 4.109 29 C -0.138 4.138 30 C -0.053 4.053 31 H 0.033 0.967 32 H 0.017 0.983 33 H 0.048 0.952 34 H 0.041 0.959 35 H 0.063 0.937 36 H 0.261 0.739 37 H 0.403 0.597 38 H 0.132 0.868 39 H 0.101 0.899 40 H 0.091 0.909 41 H 0.127 0.873 42 H 0.109 0.891 43 H 0.091 0.909 44 H 0.114 0.886 45 H 0.130 0.870 46 H 0.085 0.915 47 H 0.072 0.928 48 H 0.057 0.943 49 H 0.107 0.893 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.137 7.867 -10.880 14.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.157 4.157 3 C 0.186 3.814 4 H 0.015 0.985 5 C -0.579 4.579 6 H 0.091 0.909 7 C -0.183 4.183 8 N -0.555 5.555 9 Si 0.787 3.213 10 H -0.208 1.208 11 H -0.216 1.216 12 H -0.182 1.182 13 N -0.354 5.354 14 C 0.260 3.740 15 O -0.422 6.422 16 C 0.004 3.996 17 H 0.160 0.840 18 C -0.146 4.146 19 C -0.192 4.192 20 C 0.303 3.697 21 O -0.455 6.455 22 N -0.316 5.316 23 C 0.046 3.954 24 C -0.107 4.107 25 C -0.126 4.126 26 C -0.160 4.160 27 C -0.092 4.092 28 C -0.166 4.166 29 C -0.157 4.157 30 C -0.072 4.072 31 H 0.052 0.948 32 H 0.036 0.964 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.237 0.763 38 H 0.150 0.850 39 H 0.120 0.880 40 H 0.109 0.891 41 H 0.145 0.855 42 H 0.127 0.873 43 H 0.109 0.891 44 H 0.132 0.868 45 H 0.148 0.852 46 H 0.103 0.897 47 H 0.091 0.909 48 H 0.076 0.924 49 H 0.125 0.875 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -7.305 7.939 -10.040 14.737 hybrid contribution 1.188 -0.414 0.779 1.480 sum -6.117 7.525 -9.261 13.409 Atomic orbital electron populations 1.21600 0.97232 0.98326 1.00064 1.21756 0.93261 0.99738 1.00931 1.18158 0.92962 0.88638 0.81664 0.98539 1.21613 0.91802 1.38170 1.06266 0.90883 1.25688 1.02600 0.94699 0.95335 1.70063 1.36780 1.38729 1.09890 0.85504 0.80077 0.77088 0.78610 1.20752 1.21613 1.18217 1.46152 1.15558 1.56364 1.17308 1.21406 0.82304 0.79796 0.90477 1.90816 1.51559 1.58584 1.41213 1.21901 0.85188 0.99109 0.93415 0.84018 1.22738 0.95194 0.98460 0.98175 1.22403 0.96593 0.96045 1.04148 1.21431 0.85845 0.84682 0.77704 1.90656 1.15745 1.75908 1.63219 1.48093 1.07873 1.23530 1.52080 1.20371 1.02790 0.84866 0.87330 1.20043 0.93196 1.01573 0.95884 1.21055 0.96468 0.99130 0.95983 1.21084 0.99243 1.02526 0.93118 1.20107 0.93293 0.98754 0.97086 1.20780 1.02159 1.02383 0.91250 1.21002 0.96185 1.01781 0.96693 1.20673 0.97472 0.96398 0.92682 0.94757 0.96396 0.93279 0.94014 0.91821 0.92975 0.76251 0.85010 0.88020 0.89053 0.85528 0.87297 0.89087 0.86768 0.85241 0.89656 0.90940 0.92398 0.87535 0.87680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.97 8.51 71.98 0.61 -4.36 16 2 C -0.12 -5.44 5.45 30.59 0.17 -5.28 16 3 C 0.29 13.42 2.24 44.25 0.10 13.52 16 4 H 0.00 -0.19 7.58 -2.39 -0.02 -0.20 16 5 C -0.54 -26.40 8.73 25.60 0.22 -26.18 16 6 H 0.07 3.30 7.74 -2.91 -0.02 3.28 16 7 C 0.02 0.85 5.29 84.65 0.45 1.30 16 8 N -0.92 -50.90 11.29 21.45 0.24 -50.66 16 9 Si 0.96 40.41 29.54 68.60 2.03 42.44 16 10 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 11 H -0.29 -12.32 7.11 99.48 0.71 -11.61 16 12 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 13 N -0.70 -23.98 4.78 -446.09 -2.13 -26.12 16 14 C 0.48 15.16 5.66 87.66 0.50 15.66 16 15 O -0.54 -21.84 9.20 -3.04 -0.03 -21.87 16 16 C 0.11 2.38 3.49 44.70 0.16 2.53 16 17 H 0.14 2.10 8.14 -2.39 -0.02 2.09 16 18 C -0.11 -1.63 6.69 31.71 0.21 -1.42 16 19 C -0.15 -3.10 6.86 30.64 0.21 -2.89 16 20 C 0.51 14.60 8.02 87.90 0.70 15.31 16 21 O -0.58 -20.60 17.60 -3.04 -0.05 -20.65 16 22 N -0.59 -14.83 2.25 -802.62 -1.81 -16.64 16 23 C 0.17 4.18 6.05 85.63 0.52 4.70 16 24 C -0.11 -3.31 4.38 -19.86 -0.09 -3.39 16 25 C -0.11 -3.51 9.70 22.27 0.22 -3.29 16 26 C -0.14 -4.49 9.70 22.27 0.22 -4.28 16 27 C -0.09 -3.00 5.88 -19.87 -0.12 -3.12 16 28 C -0.11 -2.88 10.01 71.24 0.71 -2.17 16 29 C -0.14 -4.92 9.70 22.27 0.22 -4.70 16 30 C -0.05 -1.82 6.71 22.27 0.15 -1.67 16 31 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.02 0.84 7.85 -2.39 -0.02 0.83 16 33 H 0.05 1.99 5.64 -2.38 -0.01 1.97 16 34 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.06 3.41 5.95 -2.39 -0.01 3.40 16 36 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 37 H 0.40 11.08 8.52 -92.70 -0.79 10.29 16 38 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.10 1.54 7.68 -2.38 -0.02 1.52 16 40 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.11 2.09 8.08 -2.39 -0.02 2.07 16 43 H 0.09 2.21 7.87 -2.39 -0.02 2.19 16 44 H 0.11 3.67 8.06 -2.91 -0.02 3.65 16 45 H 0.13 3.50 8.06 -2.91 -0.02 3.47 16 46 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 47 H 0.07 1.73 8.09 -2.39 -0.02 1.71 16 48 H 0.06 1.60 8.09 -2.39 -0.02 1.59 16 49 H 0.11 3.81 8.06 -2.91 -0.02 3.79 16 50 H 0.11 3.52 8.06 -2.91 -0.02 3.49 16 Total: -1.00 -70.58 399.68 3.55 -67.03 By element: Atomic # 1 Polarization: 36.04 SS G_CDS: 0.15 Total: 36.19 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: 5.15 Total: -9.72 kcal Atomic # 7 Polarization: -89.72 SS G_CDS: -3.70 Total: -93.42 kcal Atomic # 8 Polarization: -42.44 SS G_CDS: -0.08 Total: -42.52 kcal Atomic # 14 Polarization: 40.41 SS G_CDS: 2.03 Total: 42.44 kcal Total: -70.58 3.55 -67.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183905253.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.278 kcal (2) G-P(sol) polarization free energy of solvation -70.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds