Wall clock time and date at job start Wed Apr 1 2020 03:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47201 * 2 1 4 4 H 1.08999 * 109.47394 * 305.53252 * 3 2 1 5 5 C 1.50707 * 109.47017 * 185.52871 * 3 2 1 6 6 H 1.07999 * 120.00091 * 245.60252 * 5 3 2 7 7 C 1.37878 * 119.99702 * 65.60855 * 5 3 2 8 8 N 1.31521 * 119.99825 * 196.25373 * 7 5 3 9 9 Si 1.86800 * 120.00232 * 16.24821 * 7 5 3 10 10 H 1.48501 * 109.47143 * 180.02562 * 9 7 5 11 11 H 1.48500 * 109.47235 * 60.00003 * 9 7 5 12 12 H 1.48500 * 109.47058 * 300.00035 * 9 7 5 13 13 N 1.46497 * 109.46902 * 65.53222 * 3 2 1 14 14 C 1.34776 * 120.00316 * 274.99933 * 13 3 2 15 15 O 1.21289 * 119.99632 * 0.02562 * 14 13 3 16 16 C 1.50697 * 120.00515 * 180.02562 * 14 13 3 17 17 H 1.08998 * 110.85531 * 62.32998 * 16 14 13 18 18 C 1.54632 * 110.96620 * 298.54422 * 16 14 13 19 19 C 1.51279 * 104.19346 * 217.08210 * 18 16 14 20 20 O 1.21281 * 124.94168 * 196.29190 * 19 18 16 21 21 N 1.34422 * 110.11792 * 16.25488 * 19 18 16 22 22 C 1.46495 * 124.34807 * 180.42716 * 21 19 18 23 23 C 1.50700 * 109.47192 * 89.97779 * 22 21 19 24 24 C 1.38240 * 120.00203 * 269.72453 * 23 22 21 25 25 C 1.38230 * 120.00270 * 179.76141 * 24 23 22 26 26 C 1.38229 * 120.00071 * 0.51208 * 25 24 23 27 27 C 1.50700 * 120.00540 * 179.71988 * 26 25 24 28 28 C 1.38243 * 119.99759 * 359.74211 * 26 25 24 29 29 C 1.38226 * 119.99838 * 0.02562 * 28 26 25 30 30 C 1.46764 * 111.29711 * 0.40672 * 21 19 18 31 31 H 1.08998 * 109.47480 * 59.99828 * 1 2 3 32 32 H 1.08996 * 109.47329 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47078 * 299.99985 * 1 2 3 34 34 H 1.09009 * 109.47076 * 240.00074 * 2 1 3 35 35 H 1.08998 * 109.47480 * 120.00172 * 2 1 3 36 36 H 0.96998 * 119.99611 * 354.84865 * 8 7 5 37 37 H 0.97000 * 120.00058 * 94.99635 * 13 3 2 38 38 H 1.09000 * 110.48990 * 335.76210 * 18 16 14 39 39 H 1.09008 * 110.48417 * 98.27495 * 18 16 14 40 40 H 1.09001 * 109.46874 * 209.97062 * 22 21 19 41 41 H 1.08994 * 109.47613 * 329.97410 * 22 21 19 42 42 H 1.08004 * 119.99489 * 359.97438 * 24 23 22 43 43 H 1.08004 * 119.99880 * 180.22396 * 25 24 23 44 44 H 1.08997 * 109.47243 * 270.02452 * 27 26 25 45 45 H 1.09003 * 109.46417 * 30.01978 * 27 26 25 46 46 H 1.08994 * 109.47626 * 150.02208 * 27 26 25 47 47 H 1.08006 * 119.99598 * 179.97438 * 28 26 25 48 48 H 1.08005 * 119.99842 * 179.97438 * 29 28 26 49 49 H 1.09007 * 110.24190 * 223.98348 * 30 21 19 50 50 H 1.09003 * 110.24437 * 101.98499 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5980 1.9842 -0.8363 5 6 3.5408 1.4446 -0.1369 6 1 4.1565 1.8042 0.6743 7 6 4.1278 0.9877 -1.2978 8 7 5.4079 0.6864 -1.3129 9 14 3.1048 0.7964 -2.8491 10 1 3.9646 0.2921 -3.9499 11 1 2.5330 2.1128 -3.2304 12 1 2.0037 -0.1682 -2.6001 13 7 1.6634 2.0935 1.2572 14 6 0.4472 2.6601 1.3848 15 8 -0.3357 2.6305 0.4589 16 6 0.0600 3.3303 2.6778 17 1 0.7148 4.1760 2.8878 18 6 0.0678 2.3202 3.8486 19 6 -1.1042 2.7397 4.7082 20 8 -1.2832 2.3920 5.8562 21 7 -1.9180 3.5545 4.0148 22 6 -3.1434 4.1513 4.5518 23 6 -2.8195 5.4801 5.1846 24 6 -2.4832 5.5442 6.5240 25 6 -2.1813 6.7625 7.1033 26 6 -2.2259 7.9179 6.3459 27 6 -1.9030 9.2469 6.9788 28 6 -2.5673 7.8545 5.0077 29 6 -2.8645 6.6357 4.4274 30 6 -1.4207 3.7698 2.6509 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5139 -0.8901 35 1 1.8933 -0.5138 0.8899 36 1 5.9552 0.8557 -0.5302 37 1 2.2894 2.1168 1.9978 38 1 -0.0750 1.3052 3.4778 39 1 0.9999 2.3931 4.4090 40 1 -3.8599 4.2988 3.7438 41 1 -3.5728 3.4869 5.3015 42 1 -2.4531 4.6420 7.1169 43 1 -1.9151 6.8120 8.1488 44 1 -2.8150 9.6903 7.3782 45 1 -1.1865 9.0997 7.7870 46 1 -1.4737 9.9116 6.2293 47 1 -2.6025 8.7574 4.4161 48 1 -3.1316 6.5861 3.3820 49 1 -1.4965 4.8239 2.3838 50 1 -1.9826 3.1594 1.9438 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183920257.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:40 Heat of formation + Delta-G solvation = -76.868029 kcal Electronic energy + Delta-G solvation = -30152.764462 eV Core-core repulsion = 26143.321823 eV Total energy + Delta-G solvation = -4009.442638 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -41.95474 -40.59423 -40.01545 -37.60748 -36.87134 -35.24275 -34.43267 -33.36861 -32.43541 -31.85078 -29.48019 -28.79556 -28.71551 -25.88518 -24.60820 -23.99347 -23.55488 -21.98025 -21.82078 -21.08385 -20.48065 -19.74773 -18.40911 -18.01528 -17.24277 -17.06174 -16.88706 -16.43776 -16.13589 -15.97459 -15.77551 -15.44394 -14.96014 -14.80221 -14.74488 -14.53366 -14.48596 -14.38727 -14.32206 -14.20070 -13.68093 -13.54793 -13.42595 -13.36765 -12.86677 -12.74199 -12.70747 -12.52115 -12.43914 -12.37910 -12.22816 -12.10756 -11.83098 -11.76349 -11.38400 -11.16512 -11.03567 -10.61709 -10.45361 -9.86147 -9.84331 -9.76480 -9.48202 -8.76466 -6.41582 0.28157 0.47656 1.45607 1.47977 1.52450 1.70398 1.72878 1.94043 2.43088 2.45875 2.88191 3.04160 3.20571 3.35102 3.78003 3.81656 3.82196 3.90646 4.07199 4.11722 4.16373 4.22901 4.36145 4.44486 4.48873 4.51410 4.55593 4.58691 4.60764 4.66878 4.75364 4.81359 4.84947 4.90435 4.93217 4.94148 5.15471 5.15671 5.25184 5.26029 5.33546 5.43136 5.47597 5.58721 5.62790 5.68195 5.68364 5.72494 6.00920 6.03862 6.09089 6.56008 6.86154 7.04246 7.31671 7.44867 8.62950 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017940 B = 0.002363 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.404888 B =11848.928951 C =12256.887382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.138 4.138 3 C 0.252 3.748 4 H 0.027 0.973 5 C -0.611 4.611 6 H 0.040 0.960 7 C -0.007 4.007 8 N -0.932 5.932 9 Si 1.071 2.929 10 H -0.288 1.288 11 H -0.271 1.271 12 H -0.243 1.243 13 N -0.699 5.699 14 C 0.518 3.482 15 O -0.569 6.569 16 C -0.111 4.111 17 H 0.135 0.865 18 C -0.140 4.140 19 C 0.518 3.482 20 O -0.568 6.568 21 N -0.606 5.606 22 C 0.164 3.836 23 C -0.124 4.124 24 C -0.110 4.110 25 C -0.136 4.136 26 C -0.090 4.090 27 C -0.114 4.114 28 C -0.131 4.131 29 C -0.102 4.102 30 C 0.124 3.876 31 H 0.042 0.958 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.053 0.947 36 H 0.257 0.743 37 H 0.403 0.597 38 H 0.107 0.893 39 H 0.123 0.877 40 H 0.114 0.886 41 H 0.082 0.918 42 H 0.111 0.889 43 H 0.130 0.870 44 H 0.080 0.920 45 H 0.069 0.931 46 H 0.075 0.925 47 H 0.141 0.859 48 H 0.141 0.859 49 H 0.102 0.898 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.464 13.813 13.861 26.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.177 4.177 3 C 0.148 3.852 4 H 0.044 0.956 5 C -0.649 4.649 6 H 0.058 0.942 7 C -0.208 4.208 8 N -0.567 5.567 9 Si 0.893 3.107 10 H -0.214 1.214 11 H -0.196 1.196 12 H -0.168 1.168 13 N -0.347 5.347 14 C 0.304 3.696 15 O -0.450 6.450 16 C -0.133 4.133 17 H 0.153 0.847 18 C -0.181 4.181 19 C 0.307 3.693 20 O -0.448 6.448 21 N -0.338 5.338 22 C 0.044 3.956 23 C -0.125 4.125 24 C -0.129 4.129 25 C -0.154 4.154 26 C -0.091 4.091 27 C -0.171 4.171 28 C -0.149 4.149 29 C -0.121 4.121 30 C 0.001 3.999 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.238 0.762 38 H 0.125 0.875 39 H 0.141 0.859 40 H 0.132 0.868 41 H 0.100 0.900 42 H 0.129 0.871 43 H 0.148 0.852 44 H 0.099 0.901 45 H 0.088 0.912 46 H 0.094 0.906 47 H 0.159 0.841 48 H 0.159 0.841 49 H 0.120 0.880 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -19.107 13.106 12.244 26.206 hybrid contribution 1.025 0.323 2.077 2.338 sum -18.082 13.429 14.321 26.691 Atomic orbital electron populations 1.21766 0.95364 1.00278 1.01619 1.22265 0.95485 0.98463 1.01440 1.18737 0.93244 0.89653 0.83603 0.95564 1.22303 0.91722 1.47795 1.03041 0.94214 1.26814 0.97670 0.92212 1.04090 1.70985 1.08186 1.43508 1.34012 0.83731 0.75154 0.78744 0.73034 1.21362 1.19631 1.16790 1.46068 1.15564 1.55923 1.17145 1.20416 0.81664 0.78295 0.89260 1.90672 1.51377 1.60684 1.42243 1.22166 0.99233 0.99920 0.91963 0.84740 1.22331 0.99378 1.00711 0.95635 1.21030 0.84638 0.77608 0.86038 1.90685 1.76660 1.59168 1.18262 1.48402 1.24704 1.46990 1.13688 1.20381 0.85150 0.90714 0.99402 1.20239 1.02438 0.95672 0.94188 1.21187 0.98591 0.97906 0.95193 1.21235 1.01404 0.92185 1.00537 1.20301 0.98096 0.96243 0.94424 1.20846 1.02398 0.92733 1.01097 1.21336 1.00242 0.98509 0.94783 1.21286 0.98723 0.91730 1.00344 1.21989 0.91917 1.03665 0.82306 0.93858 0.92937 0.92939 0.92558 0.92825 0.93352 0.76225 0.87463 0.85852 0.86818 0.89978 0.87120 0.85249 0.90143 0.91162 0.90589 0.84117 0.84142 0.87979 0.89565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.72 8.53 71.98 0.61 -4.11 16 2 C -0.14 -5.61 5.27 30.59 0.16 -5.45 16 3 C 0.25 11.03 1.82 44.25 0.08 11.11 16 4 H 0.03 1.26 6.26 -2.39 -0.01 1.24 16 5 C -0.61 -31.70 9.01 25.60 0.23 -31.47 16 6 H 0.04 2.19 7.96 -2.91 -0.02 2.17 16 7 C -0.01 -0.41 5.32 84.65 0.45 0.04 16 8 N -0.93 -55.34 13.70 21.45 0.29 -55.05 16 9 Si 1.07 48.60 26.27 68.60 1.80 50.41 16 10 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 11 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 12 H -0.24 -9.99 5.66 99.48 0.56 -9.42 16 13 N -0.70 -24.30 4.98 -446.09 -2.22 -26.52 16 14 C 0.52 15.80 5.67 87.66 0.50 16.30 16 15 O -0.57 -20.60 12.71 -3.06 -0.04 -20.64 16 16 C -0.11 -2.38 3.54 -10.48 -0.04 -2.42 16 17 H 0.13 2.40 8.14 -2.39 -0.02 2.38 16 18 C -0.14 -3.02 6.37 30.59 0.19 -2.82 16 19 C 0.52 13.09 8.02 87.90 0.71 13.80 16 20 O -0.57 -18.27 17.59 -3.03 -0.05 -18.32 16 21 N -0.61 -12.44 2.92 -822.34 -2.40 -14.83 16 22 C 0.16 2.88 6.06 85.63 0.52 3.40 16 23 C -0.12 -2.29 5.46 -19.87 -0.11 -2.40 16 24 C -0.11 -2.27 9.70 22.27 0.22 -2.06 16 25 C -0.14 -2.46 9.70 22.27 0.22 -2.24 16 26 C -0.09 -1.43 5.88 -19.87 -0.12 -1.54 16 27 C -0.11 -1.20 10.01 71.24 0.71 -0.49 16 28 C -0.13 -1.95 9.70 22.27 0.22 -1.74 16 29 C -0.10 -1.59 9.70 22.27 0.22 -1.37 16 30 C 0.12 2.40 6.66 86.83 0.58 2.97 16 31 H 0.04 1.61 7.88 -2.39 -0.02 1.59 16 32 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.05 1.79 5.63 -2.39 -0.01 1.78 16 34 H 0.06 2.43 4.73 -2.38 -0.01 2.42 16 35 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.26 15.33 8.73 -92.71 -0.81 14.52 16 37 H 0.40 12.56 8.52 -92.71 -0.79 11.77 16 38 H 0.11 2.42 7.89 -2.39 -0.02 2.40 16 39 H 0.12 2.31 8.14 -2.38 -0.02 2.29 16 40 H 0.11 1.41 8.09 -2.39 -0.02 1.39 16 41 H 0.08 1.59 7.87 -2.39 -0.02 1.57 16 42 H 0.11 2.53 8.06 -2.91 -0.02 2.51 16 43 H 0.13 1.97 8.06 -2.91 -0.02 1.94 16 44 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.07 0.68 8.09 -2.39 -0.02 0.66 16 46 H 0.08 0.66 8.09 -2.39 -0.02 0.64 16 47 H 0.14 1.49 8.06 -2.91 -0.02 1.47 16 48 H 0.14 1.60 8.06 -2.91 -0.02 1.57 16 49 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 50 H 0.09 1.88 7.06 -2.39 -0.02 1.86 16 Total: -1.00 -68.96 402.34 2.71 -66.25 By element: Atomic # 1 Polarization: 29.22 SS G_CDS: -0.03 Total: 29.20 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: 5.35 Total: -10.48 kcal Atomic # 7 Polarization: -92.08 SS G_CDS: -4.32 Total: -96.40 kcal Atomic # 8 Polarization: -38.87 SS G_CDS: -0.09 Total: -38.97 kcal Atomic # 14 Polarization: 48.60 SS G_CDS: 1.80 Total: 50.41 kcal Total: -68.96 2.71 -66.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183920257.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.618 kcal (2) G-P(sol) polarization free energy of solvation -68.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds