Wall clock time and date at job start Wed Apr 1 2020 04:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47110 * 2 1 4 4 N 1.46500 * 109.47019 * 179.97438 * 3 2 1 5 5 C 1.34773 * 119.99982 * 179.97438 * 4 3 2 6 6 O 1.21284 * 120.00209 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.99926 * 180.02562 * 5 4 3 8 8 H 1.08997 * 109.49917 * 60.07145 * 7 5 4 9 9 C 1.53043 * 109.49538 * 180.13519 * 7 5 4 10 10 C 1.53044 * 109.53826 * 181.28377 * 9 7 5 11 11 C 1.53188 * 109.33817 * 298.68412 * 10 9 7 12 12 N 1.46927 * 108.78188 * 54.61550 * 11 10 9 13 13 C 1.34770 * 120.63048 * 126.41077 * 12 11 10 14 14 O 1.21591 * 120.00103 * 175.70268 * 13 12 11 15 15 C 1.47640 * 120.00234 * 355.70258 * 13 12 11 16 16 C 1.40013 * 119.89730 * 225.85160 * 15 13 12 17 17 C 1.36315 * 120.10561 * 179.71593 * 16 15 13 18 18 C 1.40897 * 119.89299 * 0.58004 * 17 16 15 19 19 C 1.41102 * 120.10369 * 179.71966 * 18 17 16 20 20 H 1.08005 * 120.00020 * 205.16671 * 19 18 17 21 21 C 1.40231 * 120.00574 * 25.16410 * 19 18 17 22 22 N 1.30653 * 119.99545 * 17.03929 * 21 19 18 23 23 Si 1.86793 * 120.00438 * 197.04092 * 21 19 18 24 24 H 1.48504 * 109.47191 * 90.00009 * 23 21 19 25 25 H 1.48494 * 109.47348 * 209.99890 * 23 21 19 26 26 H 1.48495 * 109.47188 * 330.00250 * 23 21 19 27 27 C 1.40885 * 119.79224 * 359.69451 * 18 17 16 28 28 C 1.36322 * 119.88826 * 0.02562 * 27 18 17 29 29 C 1.46922 * 118.73551 * 306.39875 * 12 11 10 30 30 H 1.08996 * 109.46923 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47016 * 300.00112 * 1 2 3 32 32 H 1.08999 * 109.46698 * 59.99839 * 1 2 3 33 33 H 1.08999 * 109.47016 * 239.99887 * 2 1 3 34 34 H 1.08999 * 109.47012 * 119.99714 * 2 1 3 35 35 H 1.08999 * 109.47273 * 60.00044 * 3 2 1 36 36 H 1.08999 * 109.46949 * 299.99753 * 3 2 1 37 37 H 0.97001 * 119.99960 * 0.02562 * 4 3 2 38 38 H 1.09000 * 109.43654 * 61.27795 * 9 7 5 39 39 H 1.08996 * 109.48650 * 301.31886 * 9 7 5 40 40 H 1.09002 * 109.49552 * 178.71313 * 10 9 7 41 41 H 1.09005 * 109.49489 * 58.64894 * 10 9 7 42 42 H 1.08998 * 109.58694 * 174.40644 * 11 10 9 43 43 H 1.09005 * 109.58283 * 294.82745 * 11 10 9 44 44 H 1.07998 * 119.94752 * 0.02562 * 16 15 13 45 45 H 1.08002 * 120.05765 * 180.29657 * 17 16 15 46 46 H 0.96999 * 119.99571 * 179.97438 * 22 21 19 47 47 H 1.07996 * 120.05670 * 180.02562 * 27 18 17 48 48 H 1.08003 * 119.94444 * 179.97438 * 28 27 18 49 49 H 1.09001 * 109.58826 * 173.39194 * 29 12 11 50 50 H 1.08999 * 109.58470 * 293.81494 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1789 2.6097 0.0002 6 8 3.5726 3.6600 -0.0002 7 6 5.6859 2.6096 0.0003 8 1 6.0498 2.0967 -0.8900 9 6 6.1967 4.0523 0.0031 10 6 7.7268 4.0536 -0.0291 11 6 8.2612 3.3482 1.2213 12 7 7.6605 2.0098 1.3026 13 6 8.4370 0.9148 1.4223 14 8 7.9268 -0.1793 1.5672 15 6 9.9070 1.0438 1.3776 16 6 10.6614 0.1623 0.5938 17 6 12.0185 0.2812 0.5448 18 6 12.6629 1.2853 1.2942 19 6 14.0679 1.4085 1.2515 20 1 14.5958 1.8603 2.0784 21 6 14.7789 0.9444 0.1355 22 7 14.1525 0.7099 -0.9869 23 14 16.6215 0.6615 0.2534 24 1 16.8812 -0.7345 0.6882 25 1 17.2434 0.8897 -1.0756 26 1 17.2049 1.6043 1.2413 27 6 11.9001 2.1662 2.0860 28 6 10.5429 2.0431 2.1241 29 6 6.1972 1.8880 1.2511 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.6767 1.9564 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 3.9900 0.6024 0.0006 38 1 5.8521 4.5573 0.9055 39 1 5.8146 4.5750 -0.8736 40 1 8.0894 5.0813 -0.0501 41 1 8.0724 3.5276 -0.9192 42 1 9.3454 3.2587 1.1551 43 1 7.9934 3.9234 2.1077 44 1 10.1669 -0.6098 0.0231 45 1 12.5992 -0.3961 -0.0639 46 1 14.6444 0.3893 -1.7589 47 1 12.3896 2.9376 2.6619 48 1 9.9573 2.7177 2.7311 49 1 5.9196 0.8350 1.2046 50 1 5.7611 2.3440 2.1399 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270352071.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:03 Heat of formation + Delta-G solvation = -71.137717 kcal Electronic energy + Delta-G solvation = -29788.017613 eV Core-core repulsion = 25778.823459 eV Total energy + Delta-G solvation = -4009.194153 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -40.50716 -39.37861 -37.42783 -36.69136 -35.95955 -33.98238 -33.08616 -32.55429 -31.27303 -30.07925 -29.53475 -26.74491 -26.32714 -24.82172 -23.85788 -22.10974 -21.84509 -21.05053 -21.01602 -19.92187 -18.80957 -17.58754 -17.27552 -16.46538 -16.26398 -16.11214 -15.68845 -15.45768 -15.10709 -14.65805 -14.19103 -14.17342 -14.03262 -13.79859 -13.39939 -13.31459 -13.19758 -12.92245 -12.72967 -12.47240 -12.43669 -12.37141 -12.21743 -11.88035 -11.59456 -11.51845 -11.43105 -11.27646 -11.24994 -11.02200 -10.93577 -10.82920 -10.63251 -10.46645 -10.06448 -9.95212 -9.56856 -9.35692 -9.30158 -9.03052 -8.35115 -7.71570 -7.52851 -7.00648 -4.59718 2.30601 2.46144 2.91269 2.94696 2.95532 2.98830 2.99030 3.39573 3.63037 3.75914 4.44463 4.44847 4.57316 4.59626 4.62026 4.81467 4.86248 5.09078 5.19786 5.23307 5.24723 5.26771 5.39607 5.43587 5.50345 5.56700 5.62643 5.73140 5.74369 5.77343 5.82828 5.91859 5.98428 6.00293 6.09570 6.19127 6.21068 6.23070 6.37908 6.75748 6.82231 6.87052 7.01612 7.09088 7.27590 7.41644 7.56737 7.73999 7.84589 7.97311 8.04337 8.07233 8.41587 8.63938 8.73815 8.84830 9.91671 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021727 B = 0.002110 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.397984 B =13268.993196 C =13805.304432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.138 4.138 3 C 0.118 3.882 4 N -0.733 5.733 5 C 0.523 3.477 6 O -0.540 6.540 7 C -0.123 4.123 8 H 0.102 0.898 9 C -0.096 4.096 10 C -0.135 4.135 11 C 0.093 3.907 12 N -0.615 5.615 13 C 0.581 3.419 14 O -0.565 6.565 15 C -0.274 4.274 16 C -0.044 4.044 17 C -0.175 4.175 18 C 0.125 3.875 19 C -0.447 4.447 20 H 0.083 0.917 21 C 0.074 3.926 22 N -0.775 5.775 23 Si 0.913 3.087 24 H -0.265 1.265 25 H -0.276 1.276 26 H -0.260 1.260 27 C -0.232 4.232 28 C -0.058 4.058 29 C 0.126 3.874 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.404 0.596 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.116 0.884 43 H 0.061 0.939 44 H 0.093 0.907 45 H 0.121 0.879 46 H 0.286 0.714 47 H 0.098 0.902 48 H 0.096 0.904 49 H 0.092 0.908 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.003 2.152 -0.701 16.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.176 4.176 3 C -0.006 4.006 4 N -0.386 5.386 5 C 0.309 3.691 6 O -0.416 6.416 7 C -0.145 4.145 8 H 0.120 0.880 9 C -0.134 4.134 10 C -0.174 4.174 11 C -0.029 4.029 12 N -0.349 5.349 13 C 0.375 3.625 14 O -0.445 6.445 15 C -0.279 4.279 16 C -0.064 4.064 17 C -0.195 4.195 18 C 0.122 3.878 19 C -0.475 4.475 20 H 0.102 0.898 21 C -0.146 4.146 22 N -0.398 5.398 23 Si 0.737 3.263 24 H -0.190 1.190 25 H -0.201 1.201 26 H -0.184 1.184 27 C -0.251 4.251 28 C -0.076 4.076 29 C 0.002 3.998 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.238 0.762 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.134 0.866 43 H 0.079 0.921 44 H 0.111 0.889 45 H 0.139 0.861 46 H 0.097 0.903 47 H 0.116 0.884 48 H 0.114 0.886 49 H 0.110 0.890 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.678 2.267 -0.873 16.854 hybrid contribution 0.948 -0.463 -0.156 1.066 sum -15.730 1.804 -1.029 15.867 Atomic orbital electron populations 1.21673 0.94564 1.02183 1.02252 1.21756 0.96963 0.95849 1.03032 1.21396 0.79678 0.97168 1.02334 1.46119 1.07393 1.09073 1.75991 1.20597 0.89837 0.83423 0.75211 1.90686 1.70375 1.31321 1.49215 1.21773 0.91004 1.00245 1.01495 0.88031 1.21330 0.95316 0.93485 1.03317 1.21964 0.94882 1.01282 0.99240 1.22209 1.01453 0.82237 0.97046 1.48001 1.04956 1.07328 1.74584 1.18819 0.87660 0.82441 0.73541 1.90643 1.76030 1.26674 1.51139 1.18778 0.89729 1.06378 1.12991 1.20327 0.94086 0.95723 0.96246 1.20995 0.92770 1.00708 1.04987 1.17754 0.93185 0.88363 0.88483 1.19797 0.91983 1.33180 1.02501 0.89841 1.26072 1.01733 0.92412 0.94426 1.69738 1.39066 1.29922 1.01088 0.86223 0.81224 0.80086 0.78800 1.18989 1.20075 1.18352 1.20687 0.92897 1.02934 1.08612 1.20393 0.94775 0.95309 0.97167 1.21290 0.81772 1.01351 0.95374 0.92141 0.92361 0.92414 0.91197 0.91078 0.91522 0.91582 0.76174 0.91205 0.91154 0.90371 0.91168 0.86599 0.92073 0.88923 0.86124 0.90299 0.88433 0.88610 0.89004 0.91779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.91 37.16 0.37 -0.45 16 2 C -0.14 -0.88 6.05 -26.73 -0.16 -1.04 16 3 C 0.12 1.01 5.67 -4.04 -0.02 0.99 16 4 N -0.73 -7.12 5.46 -60.29 -0.33 -7.45 16 5 C 0.52 6.44 7.16 -10.99 -0.08 6.36 16 6 O -0.54 -8.32 15.98 5.55 0.09 -8.23 16 7 C -0.12 -1.48 2.68 -91.65 -0.25 -1.72 16 8 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 9 C -0.10 -1.15 4.46 -26.69 -0.12 -1.27 16 10 C -0.14 -1.65 6.08 -26.61 -0.16 -1.81 16 11 C 0.09 1.31 5.20 -3.71 -0.02 1.29 16 12 N -0.62 -9.89 2.97 -173.96 -0.52 -10.41 16 13 C 0.58 11.76 7.27 -12.43 -0.09 11.67 16 14 O -0.56 -12.77 16.42 5.29 0.09 -12.68 16 15 C -0.27 -5.98 5.20 -104.73 -0.54 -6.52 16 16 C -0.04 -1.04 9.62 -39.61 -0.38 -1.42 16 17 C -0.18 -4.33 8.63 -39.27 -0.34 -4.67 16 18 C 0.13 3.10 5.57 -106.80 -0.60 2.51 16 19 C -0.45 -10.91 9.05 -37.75 -0.34 -11.25 16 20 H 0.08 1.95 7.91 -52.48 -0.41 1.53 16 21 C 0.07 1.72 5.15 -17.30 -0.09 1.63 16 22 N -0.77 -18.53 10.94 55.56 0.61 -17.92 16 23 Si 0.91 17.25 29.59 -169.99 -5.03 12.22 16 24 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 25 H -0.28 -5.11 7.11 56.52 0.40 -4.70 16 26 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 27 C -0.23 -5.19 9.73 -39.27 -0.38 -5.57 16 28 C -0.06 -1.19 7.24 -39.61 -0.29 -1.47 16 29 C 0.13 1.69 5.56 -3.71 -0.02 1.67 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.40 3.32 8.01 -40.82 -0.33 2.99 16 38 H 0.07 0.85 8.13 -51.93 -0.42 0.43 16 39 H 0.07 0.84 8.07 -51.93 -0.42 0.42 16 40 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.12 1.86 4.23 -51.93 -0.22 1.64 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.09 2.09 8.06 -52.49 -0.42 1.66 16 45 H 0.12 3.07 6.16 -52.49 -0.32 2.75 16 46 H 0.29 6.18 8.29 -40.82 -0.34 5.84 16 47 H 0.10 2.02 8.06 -52.49 -0.42 1.59 16 48 H 0.10 1.70 6.58 -52.48 -0.35 1.35 16 49 H 0.09 1.27 6.63 -51.93 -0.34 0.92 16 50 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 400.72 15.07 6.04 6.04 Total: -1.00 -29.20 400.72 -10.43 -39.63 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -7.87 Total: 9.88 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: -3.51 Total: -11.08 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: -0.24 Total: -35.78 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: 0.18 Total: -20.91 kcal Atomic # 14 Polarization: 17.25 SS G_CDS: -5.03 Total: 12.22 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -29.20 -10.43 -39.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270352071.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.505 kcal (2) G-P(sol) polarization free energy of solvation -29.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds