Wall clock time and date at job start Wed Apr 1 2020 04:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47110 * 2 1 4 4 N 1.46500 * 109.47019 * 179.97438 * 3 2 1 5 5 C 1.34773 * 119.99982 * 179.97438 * 4 3 2 6 6 O 1.21284 * 120.00209 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.99926 * 180.02562 * 5 4 3 8 8 H 1.08997 * 109.49917 * 60.07145 * 7 5 4 9 9 C 1.53043 * 109.49538 * 180.13519 * 7 5 4 10 10 C 1.53044 * 109.53826 * 181.28377 * 9 7 5 11 11 C 1.53188 * 109.33817 * 298.68412 * 10 9 7 12 12 N 1.46927 * 108.78188 * 54.61550 * 11 10 9 13 13 C 1.34770 * 120.63048 * 126.41077 * 12 11 10 14 14 O 1.21591 * 120.00103 * 175.70268 * 13 12 11 15 15 C 1.47640 * 120.00234 * 355.70258 * 13 12 11 16 16 C 1.40013 * 119.89730 * 225.85160 * 15 13 12 17 17 C 1.36315 * 120.10561 * 179.71593 * 16 15 13 18 18 C 1.40897 * 119.89299 * 0.58004 * 17 16 15 19 19 C 1.41102 * 120.10369 * 179.71966 * 18 17 16 20 20 H 1.08005 * 120.00020 * 205.16671 * 19 18 17 21 21 C 1.40231 * 120.00574 * 25.16410 * 19 18 17 22 22 N 1.30653 * 119.99545 * 17.03929 * 21 19 18 23 23 Si 1.86793 * 120.00438 * 197.04092 * 21 19 18 24 24 H 1.48504 * 109.47191 * 90.00009 * 23 21 19 25 25 H 1.48494 * 109.47348 * 209.99890 * 23 21 19 26 26 H 1.48495 * 109.47188 * 330.00250 * 23 21 19 27 27 C 1.40885 * 119.79224 * 359.69451 * 18 17 16 28 28 C 1.36322 * 119.88826 * 0.02562 * 27 18 17 29 29 C 1.46922 * 118.73551 * 306.39875 * 12 11 10 30 30 H 1.08996 * 109.46923 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47016 * 300.00112 * 1 2 3 32 32 H 1.08999 * 109.46698 * 59.99839 * 1 2 3 33 33 H 1.08999 * 109.47016 * 239.99887 * 2 1 3 34 34 H 1.08999 * 109.47012 * 119.99714 * 2 1 3 35 35 H 1.08999 * 109.47273 * 60.00044 * 3 2 1 36 36 H 1.08999 * 109.46949 * 299.99753 * 3 2 1 37 37 H 0.97001 * 119.99960 * 0.02562 * 4 3 2 38 38 H 1.09000 * 109.43654 * 61.27795 * 9 7 5 39 39 H 1.08996 * 109.48650 * 301.31886 * 9 7 5 40 40 H 1.09002 * 109.49552 * 178.71313 * 10 9 7 41 41 H 1.09005 * 109.49489 * 58.64894 * 10 9 7 42 42 H 1.08998 * 109.58694 * 174.40644 * 11 10 9 43 43 H 1.09005 * 109.58283 * 294.82745 * 11 10 9 44 44 H 1.07998 * 119.94752 * 0.02562 * 16 15 13 45 45 H 1.08002 * 120.05765 * 180.29657 * 17 16 15 46 46 H 0.96999 * 119.99571 * 179.97438 * 22 21 19 47 47 H 1.07996 * 120.05670 * 180.02562 * 27 18 17 48 48 H 1.08003 * 119.94444 * 179.97438 * 28 27 18 49 49 H 1.09001 * 109.58826 * 173.39194 * 29 12 11 50 50 H 1.08999 * 109.58470 * 293.81494 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1789 2.6097 0.0002 6 8 3.5726 3.6600 -0.0002 7 6 5.6859 2.6096 0.0003 8 1 6.0498 2.0967 -0.8900 9 6 6.1967 4.0523 0.0031 10 6 7.7268 4.0536 -0.0291 11 6 8.2612 3.3482 1.2213 12 7 7.6605 2.0098 1.3026 13 6 8.4370 0.9148 1.4223 14 8 7.9268 -0.1793 1.5672 15 6 9.9070 1.0438 1.3776 16 6 10.6614 0.1623 0.5938 17 6 12.0185 0.2812 0.5448 18 6 12.6629 1.2853 1.2942 19 6 14.0679 1.4085 1.2515 20 1 14.5958 1.8603 2.0784 21 6 14.7789 0.9444 0.1355 22 7 14.1525 0.7099 -0.9869 23 14 16.6215 0.6615 0.2534 24 1 16.8812 -0.7345 0.6882 25 1 17.2434 0.8897 -1.0756 26 1 17.2049 1.6043 1.2413 27 6 11.9001 2.1662 2.0860 28 6 10.5429 2.0431 2.1241 29 6 6.1972 1.8880 1.2511 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.6767 1.9564 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 3.9900 0.6024 0.0006 38 1 5.8521 4.5573 0.9055 39 1 5.8146 4.5750 -0.8736 40 1 8.0894 5.0813 -0.0501 41 1 8.0724 3.5276 -0.9192 42 1 9.3454 3.2587 1.1551 43 1 7.9934 3.9234 2.1077 44 1 10.1669 -0.6098 0.0231 45 1 12.5992 -0.3961 -0.0639 46 1 14.6444 0.3893 -1.7589 47 1 12.3896 2.9376 2.6619 48 1 9.9573 2.7177 2.7311 49 1 5.9196 0.8350 1.2046 50 1 5.7611 2.3440 2.1399 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270352071.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:02 Heat of formation + Delta-G solvation = -86.729470 kcal Electronic energy + Delta-G solvation = -29788.693722 eV Core-core repulsion = 25778.823459 eV Total energy + Delta-G solvation = -4009.870263 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -41.67978 -40.68828 -39.03652 -38.04836 -36.79540 -35.70606 -34.11202 -33.58698 -32.39635 -31.80368 -31.20848 -28.04221 -27.40849 -26.16249 -24.92159 -23.47190 -22.77341 -22.62405 -22.23194 -20.98175 -20.17468 -19.35351 -18.47876 -17.66500 -17.35614 -17.16691 -17.07458 -16.76526 -16.16161 -15.98810 -15.69212 -15.38117 -15.24558 -14.80407 -14.77561 -14.62339 -14.38475 -13.99603 -13.92366 -13.84573 -13.73814 -13.48126 -13.30312 -13.24818 -12.95198 -12.83103 -12.64000 -12.52423 -12.37173 -12.07755 -11.97827 -11.83404 -11.78217 -11.72471 -11.65318 -11.33479 -11.09082 -11.00784 -10.62062 -10.16456 -9.70159 -9.49659 -9.29875 -8.73787 -6.43234 0.58229 1.14746 1.39744 1.43654 1.46352 1.53612 1.90718 2.05937 2.17975 2.23485 2.71355 3.54661 3.61781 3.67515 3.77621 3.89806 4.00964 4.04523 4.05496 4.21260 4.21756 4.33328 4.37907 4.40420 4.51282 4.58725 4.65164 4.71849 4.72724 4.82966 4.86963 4.90865 4.99597 5.05797 5.07612 5.13870 5.14309 5.21933 5.22453 5.29539 5.30012 5.37307 5.45541 5.57957 5.62761 5.80476 6.00699 6.04060 6.24335 6.42139 6.45979 6.60082 6.82632 6.93022 7.12369 7.28754 8.21303 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021727 B = 0.002110 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.397984 B =13268.993196 C =13805.304432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.131 4.131 3 C 0.117 3.883 4 N -0.723 5.723 5 C 0.526 3.474 6 O -0.572 6.572 7 C -0.115 4.115 8 H 0.103 0.897 9 C -0.091 4.091 10 C -0.128 4.128 11 C 0.088 3.912 12 N -0.605 5.605 13 C 0.580 3.420 14 O -0.595 6.595 15 C -0.277 4.277 16 C -0.055 4.055 17 C -0.196 4.196 18 C 0.098 3.902 19 C -0.478 4.478 20 H 0.087 0.913 21 C 0.036 3.964 22 N -0.806 5.806 23 Si 0.985 3.015 24 H -0.264 1.264 25 H -0.267 1.267 26 H -0.254 1.254 27 C -0.241 4.241 28 C -0.044 4.044 29 C 0.127 3.873 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.412 0.588 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.099 0.901 41 H 0.057 0.943 42 H 0.098 0.902 43 H 0.087 0.913 44 H 0.091 0.909 45 H 0.104 0.896 46 H 0.293 0.707 47 H 0.113 0.887 48 H 0.130 0.870 49 H 0.088 0.912 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.709 3.071 -0.165 16.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.169 4.169 3 C -0.006 4.006 4 N -0.375 5.375 5 C 0.312 3.688 6 O -0.451 6.451 7 C -0.137 4.137 8 H 0.121 0.879 9 C -0.129 4.129 10 C -0.166 4.166 11 C -0.034 4.034 12 N -0.337 5.337 13 C 0.373 3.627 14 O -0.477 6.477 15 C -0.282 4.282 16 C -0.074 4.074 17 C -0.216 4.216 18 C 0.095 3.905 19 C -0.505 4.505 20 H 0.105 0.895 21 C -0.182 4.182 22 N -0.430 5.430 23 Si 0.805 3.195 24 H -0.189 1.189 25 H -0.192 1.192 26 H -0.177 1.177 27 C -0.260 4.260 28 C -0.063 4.063 29 C 0.004 3.996 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.248 0.752 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.118 0.882 41 H 0.076 0.924 42 H 0.116 0.884 43 H 0.105 0.895 44 H 0.109 0.891 45 H 0.122 0.878 46 H 0.104 0.896 47 H 0.131 0.869 48 H 0.148 0.852 49 H 0.107 0.893 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.416 3.196 -0.342 17.710 hybrid contribution 1.005 -0.721 -0.327 1.280 sum -16.411 2.475 -0.669 16.610 Atomic orbital electron populations 1.21679 0.93823 1.02779 1.02354 1.21718 0.97519 0.94228 1.03437 1.21487 0.78785 0.98624 1.01752 1.46115 1.08063 1.08788 1.74504 1.20562 0.89790 0.83538 0.74938 1.90677 1.70858 1.32496 1.51041 1.21680 0.90957 1.00307 1.00758 0.87893 1.21285 0.94878 0.93240 1.03539 1.21910 0.95008 1.02072 0.97607 1.22366 1.00352 0.81445 0.99216 1.47956 1.05952 1.07046 1.72740 1.18563 0.87251 0.83033 0.73868 1.90626 1.76288 1.27994 1.52822 1.19030 0.91034 1.05911 1.12190 1.20423 0.93880 0.96294 0.96838 1.20910 0.93277 1.01334 1.06044 1.18101 0.94038 0.89005 0.89361 1.20063 0.92339 1.34768 1.03371 0.89466 1.26909 1.06191 0.91516 0.93622 1.69787 1.41010 1.30387 1.01850 0.85149 0.75440 0.79822 0.79091 1.18887 1.19192 1.17699 1.20914 0.93663 1.02942 1.08498 1.20653 0.94348 0.94932 0.96346 1.21426 0.79903 1.01633 0.96657 0.91289 0.92335 0.92301 0.90674 0.90757 0.92141 0.92136 0.75192 0.90970 0.90964 0.88227 0.92381 0.88429 0.89487 0.89088 0.87835 0.89581 0.86878 0.85223 0.89328 0.90428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.91 71.98 0.71 -0.69 16 2 C -0.13 -1.46 6.05 30.60 0.19 -1.27 16 3 C 0.12 1.86 5.67 86.38 0.49 2.35 16 4 N -0.72 -13.00 5.46 -463.06 -2.53 -15.53 16 5 C 0.53 12.15 7.16 87.66 0.63 12.78 16 6 O -0.57 -16.90 15.98 -3.04 -0.05 -16.94 16 7 C -0.11 -2.55 2.68 -11.46 -0.03 -2.58 16 8 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 9 C -0.09 -1.98 4.46 30.62 0.14 -1.84 16 10 C -0.13 -2.82 6.08 30.67 0.19 -2.63 16 11 C 0.09 2.26 5.20 86.36 0.45 2.71 16 12 N -0.61 -18.37 2.97 -822.55 -2.44 -20.81 16 13 C 0.58 22.99 7.27 86.73 0.63 23.62 16 14 O -0.59 -26.69 16.42 -4.00 -0.07 -26.76 16 15 C -0.28 -12.03 5.20 -19.93 -0.10 -12.13 16 16 C -0.06 -2.64 9.62 22.25 0.21 -2.43 16 17 C -0.20 -10.09 8.63 22.47 0.19 -9.89 16 18 C 0.10 4.96 5.57 -21.28 -0.12 4.84 16 19 C -0.48 -23.77 9.05 23.46 0.21 -23.56 16 20 H 0.09 4.11 7.91 -2.91 -0.02 4.09 16 21 C 0.04 1.67 5.15 85.35 0.44 2.11 16 22 N -0.81 -39.54 10.94 21.87 0.24 -39.30 16 23 Si 0.98 35.33 29.59 68.60 2.03 37.36 16 24 H -0.26 -9.36 7.11 99.48 0.71 -8.66 16 25 H -0.27 -9.14 7.11 99.48 0.71 -8.44 16 26 H -0.25 -8.76 7.11 99.48 0.71 -8.05 16 27 C -0.24 -10.70 9.73 22.47 0.22 -10.48 16 28 C -0.04 -1.77 7.24 22.25 0.16 -1.61 16 29 C 0.13 3.16 5.56 86.36 0.48 3.64 16 30 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.41 6.12 8.01 -92.71 -0.74 5.38 16 38 H 0.07 1.56 8.13 -2.39 -0.02 1.54 16 39 H 0.07 1.58 8.07 -2.39 -0.02 1.56 16 40 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 42 H 0.10 2.93 4.23 -2.39 -0.01 2.92 16 43 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 44 H 0.09 4.27 8.06 -2.91 -0.02 4.25 16 45 H 0.10 5.57 6.16 -2.91 -0.02 5.55 16 46 H 0.29 12.93 8.29 -92.71 -0.77 12.16 16 47 H 0.11 4.57 8.06 -2.91 -0.02 4.55 16 48 H 0.13 4.25 6.58 -2.91 -0.02 4.23 16 49 H 0.09 2.30 6.63 -2.39 -0.02 2.29 16 50 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -63.90 400.72 2.47 -61.43 By element: Atomic # 1 Polarization: 37.45 SS G_CDS: 0.20 Total: 37.65 kcal Atomic # 6 Polarization: -22.18 SS G_CDS: 5.09 Total: -17.09 kcal Atomic # 7 Polarization: -70.92 SS G_CDS: -4.73 Total: -75.65 kcal Atomic # 8 Polarization: -43.59 SS G_CDS: -0.11 Total: -43.70 kcal Atomic # 14 Polarization: 35.33 SS G_CDS: 2.03 Total: 37.36 kcal Total: -63.90 2.47 -61.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270352071.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.299 kcal (2) G-P(sol) polarization free energy of solvation -63.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds