Wall clock time and date at job start Wed Apr 1 2020 03:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47404 * 2 1 4 4 N 1.46900 * 109.47323 * 179.97438 * 3 2 1 5 5 C 1.46897 * 110.99768 * 66.04622 * 4 3 2 6 6 C 1.46900 * 110.99866 * 189.99774 * 4 3 2 7 7 C 1.53005 * 109.47014 * 75.10324 * 6 4 3 8 8 H 1.08996 * 110.88495 * 289.30734 * 7 6 4 9 9 C 1.55160 * 111.00441 * 53.19040 * 7 6 4 10 10 C 1.54318 * 102.94473 * 153.57845 * 9 7 6 11 11 N 1.47026 * 107.26850 * 337.80372 * 10 9 7 12 12 S 1.65601 * 125.64834 * 178.98641 * 11 10 9 13 13 O 1.42102 * 104.27711 * 206.04659 * 12 11 10 14 14 O 1.42100 * 104.27770 * 333.90599 * 12 11 10 15 15 C 1.81403 * 104.44995 * 89.97595 * 12 11 10 16 16 C 1.52996 * 109.46949 * 173.09214 * 15 12 11 17 17 C 1.50692 * 115.54917 * 53.79843 * 16 15 12 18 18 H 1.08008 * 120.00097 * 265.59202 * 17 16 15 19 19 C 1.37878 * 120.00636 * 85.59453 * 17 16 15 20 20 N 1.31515 * 119.99898 * 177.42106 * 19 17 16 21 21 Si 1.86802 * 119.99769 * 357.41640 * 19 17 16 22 22 H 1.48495 * 109.47219 * 90.03566 * 21 19 17 23 23 H 1.48496 * 109.46861 * 210.03841 * 21 19 17 24 24 H 1.48504 * 109.46752 * 330.03452 * 21 19 17 25 25 C 1.53001 * 117.50046 * 268.12011 * 16 15 12 26 26 C 1.53005 * 117.49383 * 199.45895 * 16 15 12 27 27 C 1.47419 * 108.70407 * 358.94387 * 11 10 9 28 28 H 1.08999 * 109.47005 * 299.99978 * 1 2 3 29 29 H 1.08998 * 109.47043 * 60.00034 * 1 2 3 30 30 H 1.08998 * 109.47178 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47436 * 240.00183 * 2 1 3 32 32 H 1.09006 * 109.47581 * 119.99629 * 2 1 3 33 33 H 1.08999 * 109.47022 * 60.00032 * 3 2 1 34 34 H 1.08998 * 109.46993 * 299.99996 * 3 2 1 35 35 H 1.08998 * 109.47430 * 54.09641 * 5 4 3 36 36 H 1.09007 * 109.46833 * 174.10175 * 5 4 3 37 37 H 1.08998 * 109.47294 * 294.09152 * 5 4 3 38 38 H 1.09003 * 109.46782 * 195.09987 * 6 4 3 39 39 H 1.08999 * 109.47402 * 315.10012 * 6 4 3 40 40 H 1.09007 * 110.71564 * 271.93886 * 9 7 6 41 41 H 1.08997 * 110.72246 * 35.20519 * 9 7 6 42 42 H 1.09003 * 109.88699 * 97.22129 * 10 9 7 43 43 H 1.08995 * 109.88459 * 218.38901 * 10 9 7 44 44 H 1.09001 * 109.46727 * 293.09974 * 15 12 11 45 45 H 1.09003 * 109.46356 * 53.09421 * 15 12 11 46 46 H 0.97006 * 119.99640 * 180.02562 * 20 19 17 47 47 H 1.08997 * 117.49668 * 0.02562 * 25 16 15 48 48 H 1.08997 * 117.50056 * 145.02440 * 25 16 15 49 49 H 1.09000 * 117.49490 * 214.98098 * 26 16 15 50 50 H 1.09000 * 117.50199 * 0.02562 * 26 16 15 51 51 H 1.08999 * 110.37080 * 265.28797 * 27 11 10 52 52 H 1.09000 * 110.36955 * 142.96605 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5091 1.4425 0.0006 5 6 4.0360 0.8855 -1.2524 6 6 4.0354 2.7931 0.2387 7 6 3.8713 3.1511 1.7172 8 1 2.8219 3.3121 1.9639 9 6 4.4951 2.0594 2.6263 10 6 4.8571 2.8411 3.9067 11 7 4.9726 4.2588 3.5345 12 16 5.3229 5.5030 4.5697 13 8 4.7387 6.6441 3.9566 14 8 4.8741 5.0416 5.8366 15 6 7.1328 5.6207 4.5398 16 6 7.5768 6.8533 5.3301 17 6 7.0524 6.9450 6.7399 18 1 6.1530 7.5063 6.9461 19 6 7.7207 6.3124 7.7666 20 7 7.2919 6.4343 9.0039 21 14 9.2352 5.2821 7.4002 22 1 10.4461 6.1386 7.4731 23 1 9.3423 4.1874 8.3978 24 1 9.1210 4.7012 6.0383 25 6 7.7570 8.1612 4.5568 26 6 8.9823 7.3954 5.0624 27 6 4.7258 4.3892 2.0870 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.6039 1.4207 -2.0980 36 1 5.1206 0.9930 -1.2700 37 1 3.7745 -0.1706 -1.3188 38 1 5.0920 2.8234 -0.0273 39 1 3.4863 3.5100 -0.3718 40 1 3.7677 1.2774 2.8446 41 1 5.3888 1.6384 2.1658 42 1 4.0715 2.7162 4.6519 43 1 5.8073 2.4835 4.3032 44 1 7.5626 4.7260 4.9902 45 1 7.4741 5.7081 3.5083 46 1 7.7623 5.9895 9.7263 47 1 7.5588 8.1436 3.4852 48 1 7.4966 9.0880 5.0679 49 1 9.5274 7.8189 5.9060 50 1 9.5905 6.8743 4.3231 51 1 5.6679 4.3772 1.5389 52 1 4.1755 5.3063 1.8770 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346455124.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:52 Heat of formation + Delta-G solvation = -43.571624 kcal Electronic energy + Delta-G solvation = -29527.070079 eV Core-core repulsion = 25654.515233 eV Total energy + Delta-G solvation = -3872.554847 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.22775 -37.43366 -37.09187 -36.25766 -35.04713 -33.68545 -32.16177 -31.33894 -29.36607 -28.48694 -27.33565 -26.30900 -25.49927 -22.99443 -22.14363 -21.68953 -21.29801 -20.08719 -19.35507 -18.34403 -17.21441 -16.64489 -16.30188 -16.02571 -15.66045 -15.23209 -15.18053 -14.78270 -14.59660 -14.28497 -13.90897 -13.77909 -13.35155 -13.21443 -13.11521 -13.03710 -12.80715 -12.57101 -12.53896 -12.43289 -12.18066 -12.03196 -11.60560 -11.38419 -11.31930 -11.19643 -11.15981 -11.05827 -11.00537 -10.92034 -10.83314 -10.77843 -10.63096 -10.52524 -10.38688 -10.05186 -9.72463 -9.15660 -8.81518 -8.65248 -8.63478 -8.39053 -6.16196 -4.25713 0.96678 3.23111 3.31534 3.33042 3.37954 3.55031 4.35408 4.44470 4.53000 4.58363 4.61640 4.66328 4.71384 4.81166 4.95246 5.02322 5.04435 5.07554 5.12819 5.17387 5.26101 5.29965 5.33678 5.40365 5.44946 5.46962 5.52407 5.56989 5.60703 5.70922 5.72183 5.73246 5.85790 5.93404 5.94422 5.95249 5.97918 6.04046 6.10039 6.21694 6.26717 6.38674 6.42470 6.61667 6.70635 6.75847 6.76024 6.87608 7.06477 7.59985 8.36762 8.87394 9.45025 10.95397 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.019933 B = 0.002698 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.388344 B =10377.366990 C =10558.669258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C 0.052 3.948 4 N -0.539 5.539 5 C 0.023 3.977 6 C 0.064 3.936 7 C -0.095 4.095 8 H 0.082 0.918 9 C -0.102 4.102 10 C 0.114 3.886 11 N -1.023 6.023 12 S 2.633 3.367 13 O -0.964 6.964 14 O -0.930 6.930 15 C -0.581 4.581 16 C 0.004 3.996 17 C -0.520 4.520 18 H 0.086 0.914 19 C 0.094 3.906 20 N -0.878 5.878 21 Si 0.874 3.126 22 H -0.274 1.274 23 H -0.289 1.289 24 H -0.257 1.257 25 C -0.173 4.173 26 C -0.186 4.186 27 C 0.121 3.879 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.032 0.968 35 H 0.023 0.977 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.039 0.961 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.062 0.938 44 H 0.124 0.876 45 H 0.104 0.896 46 H 0.268 0.732 47 H 0.078 0.922 48 H 0.094 0.906 49 H 0.092 0.908 50 H 0.074 0.926 51 H 0.062 0.938 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.416 -12.961 -21.269 25.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.076 4.076 4 N -0.263 5.263 5 C -0.125 4.125 6 C -0.065 4.065 7 C -0.115 4.115 8 H 0.101 0.899 9 C -0.141 4.141 10 C -0.012 4.012 11 N -0.860 5.860 12 S 2.730 3.270 13 O -0.955 6.955 14 O -0.921 6.921 15 C -0.712 4.712 16 C 0.001 3.999 17 C -0.557 4.557 18 H 0.104 0.896 19 C -0.112 4.112 20 N -0.513 5.513 21 Si 0.702 3.298 22 H -0.200 1.200 23 H -0.215 1.215 24 H -0.182 1.182 25 C -0.211 4.211 26 C -0.225 4.225 27 C -0.005 4.005 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.050 0.950 35 H 0.042 0.958 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.057 0.943 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.080 0.920 44 H 0.143 0.857 45 H 0.122 0.878 46 H 0.078 0.922 47 H 0.096 0.904 48 H 0.113 0.887 49 H 0.111 0.889 50 H 0.092 0.908 51 H 0.080 0.920 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.871 -12.752 -20.124 24.796 hybrid contribution 1.360 -0.298 -0.990 1.708 sum -5.512 -13.050 -21.114 25.426 Atomic orbital electron populations 1.21745 0.95700 1.01752 1.01843 1.21525 0.95338 0.96392 1.02582 1.22253 0.87065 0.97285 1.00983 1.61956 1.07708 1.22091 1.34543 1.22425 1.00237 1.00212 0.89607 1.22081 1.00320 0.88676 0.95384 1.22348 1.00066 0.94938 0.94147 0.89947 1.22446 1.01071 0.96905 0.93668 1.21756 1.01433 0.80090 0.97886 1.59163 1.86720 1.20709 1.19422 1.04501 0.77740 0.72087 0.72627 1.93485 1.75506 1.49078 1.77423 1.93579 1.79238 1.79889 1.39350 1.30376 1.25687 1.08592 1.06581 1.18813 0.97257 0.88139 0.95669 1.20362 1.13081 1.35148 0.87126 0.89589 1.24933 0.96870 0.94776 0.94595 1.69884 1.39906 1.42071 0.99405 0.86948 0.83602 0.80546 0.78754 1.20009 1.21534 1.18152 1.22951 1.02708 0.97187 0.98206 1.22989 0.91440 1.05484 1.02593 1.21945 0.98821 0.98849 0.80920 0.92502 0.92987 0.92580 0.92197 0.91052 0.90466 0.95010 0.95805 0.91474 0.91236 0.90406 0.94256 0.90186 0.90730 0.91131 0.91965 0.85747 0.87761 0.92218 0.90376 0.88718 0.88932 0.90771 0.92026 0.90049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.91 37.16 0.37 -0.54 16 2 C -0.12 -0.79 5.86 -26.73 -0.16 -0.95 16 3 C 0.05 0.38 4.79 -3.82 -0.02 0.37 16 4 N -0.54 -4.22 4.16 -242.91 -1.01 -5.23 16 5 C 0.02 0.15 9.23 60.06 0.55 0.71 16 6 C 0.06 0.52 4.65 -3.82 -0.02 0.50 16 7 C -0.09 -0.95 2.95 -88.47 -0.26 -1.21 16 8 H 0.08 0.85 7.22 -51.93 -0.37 0.48 16 9 C -0.10 -1.05 5.91 -24.90 -0.15 -1.19 16 10 C 0.11 1.54 6.90 -3.06 -0.02 1.52 16 11 N -1.02 -16.06 3.62 -111.43 -0.40 -16.46 16 12 S 2.63 55.04 5.14 -107.50 -0.55 54.49 16 13 O -0.96 -21.74 17.28 -57.54 -0.99 -22.73 16 14 O -0.93 -23.34 16.97 -57.54 -0.98 -24.31 16 15 C -0.58 -11.74 5.88 37.16 0.22 -11.52 16 16 C 0.00 0.09 0.94 -155.66 -0.15 -0.05 16 17 C -0.52 -14.77 8.14 -34.44 -0.28 -15.05 16 18 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16 19 C 0.09 2.72 5.47 -17.82 -0.10 2.62 16 20 N -0.88 -26.98 13.96 55.43 0.77 -26.21 16 21 Si 0.87 21.32 25.13 -169.99 -4.27 17.05 16 22 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.26 -5.74 5.37 56.52 0.30 -5.44 16 25 C -0.17 -3.59 9.92 -26.69 -0.26 -3.86 16 26 C -0.19 -3.90 7.75 -26.69 -0.21 -4.11 16 27 C 0.12 1.49 6.54 -2.53 -0.02 1.47 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.38 6.69 -51.93 -0.35 0.03 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.62 6.83 -51.93 -0.35 0.26 16 34 H 0.03 0.23 8.06 -51.93 -0.42 -0.18 16 35 H 0.02 0.15 8.06 -51.93 -0.42 -0.27 16 36 H 0.07 0.41 7.84 -51.93 -0.41 0.00 16 37 H 0.07 0.42 6.76 -51.93 -0.35 0.07 16 38 H 0.08 0.59 7.53 -51.93 -0.39 0.20 16 39 H 0.04 0.31 8.01 -51.93 -0.42 -0.11 16 40 H 0.08 0.76 8.14 -51.92 -0.42 0.34 16 41 H 0.07 0.71 8.04 -51.93 -0.42 0.30 16 42 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.12 2.48 6.04 -51.92 -0.31 2.17 16 45 H 0.10 1.70 8.08 -51.92 -0.42 1.28 16 46 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 47 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 48 H 0.09 1.98 8.14 -51.93 -0.42 1.55 16 49 H 0.09 2.01 7.47 -51.93 -0.39 1.62 16 50 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 51 H 0.06 0.64 7.88 -51.93 -0.41 0.23 16 52 H 0.08 1.04 7.67 -51.93 -0.40 0.64 16 LS Contribution 410.63 15.07 6.19 6.19 Total: -1.00 -34.37 410.63 -11.45 -45.81 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -9.71 Total: 2.69 kcal Atomic # 6 Polarization: -30.80 SS G_CDS: -0.49 Total: -31.29 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: -0.64 Total: -47.90 kcal Atomic # 8 Polarization: -45.08 SS G_CDS: -1.97 Total: -47.05 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.27 Total: 17.05 kcal Atomic # 16 Polarization: 55.04 SS G_CDS: -0.55 Total: 54.49 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -34.37 -11.45 -45.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346455124.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.242 kcal (2) G-P(sol) polarization free energy of solvation -34.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds