Wall clock time and date at job start Wed Apr 1 2020 03:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47404 * 2 1 4 4 N 1.46900 * 109.47323 * 179.97438 * 3 2 1 5 5 C 1.46897 * 110.99768 * 66.04622 * 4 3 2 6 6 C 1.46900 * 110.99866 * 189.99774 * 4 3 2 7 7 C 1.53005 * 109.47014 * 75.10324 * 6 4 3 8 8 H 1.08996 * 110.88495 * 289.30734 * 7 6 4 9 9 C 1.55160 * 111.00441 * 53.19040 * 7 6 4 10 10 C 1.54318 * 102.94473 * 153.57845 * 9 7 6 11 11 N 1.47026 * 107.26850 * 337.80372 * 10 9 7 12 12 S 1.65601 * 125.64834 * 178.98641 * 11 10 9 13 13 O 1.42102 * 104.27711 * 206.04659 * 12 11 10 14 14 O 1.42100 * 104.27770 * 333.90599 * 12 11 10 15 15 C 1.81403 * 104.44995 * 89.97595 * 12 11 10 16 16 C 1.52996 * 109.46949 * 173.09214 * 15 12 11 17 17 C 1.50692 * 115.54917 * 53.79843 * 16 15 12 18 18 H 1.08008 * 120.00097 * 265.59202 * 17 16 15 19 19 C 1.37878 * 120.00636 * 85.59453 * 17 16 15 20 20 N 1.31515 * 119.99898 * 177.42106 * 19 17 16 21 21 Si 1.86802 * 119.99769 * 357.41640 * 19 17 16 22 22 H 1.48495 * 109.47219 * 90.03566 * 21 19 17 23 23 H 1.48496 * 109.46861 * 210.03841 * 21 19 17 24 24 H 1.48504 * 109.46752 * 330.03452 * 21 19 17 25 25 C 1.53001 * 117.50046 * 268.12011 * 16 15 12 26 26 C 1.53005 * 117.49383 * 199.45895 * 16 15 12 27 27 C 1.47419 * 108.70407 * 358.94387 * 11 10 9 28 28 H 1.08999 * 109.47005 * 299.99978 * 1 2 3 29 29 H 1.08998 * 109.47043 * 60.00034 * 1 2 3 30 30 H 1.08998 * 109.47178 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47436 * 240.00183 * 2 1 3 32 32 H 1.09006 * 109.47581 * 119.99629 * 2 1 3 33 33 H 1.08999 * 109.47022 * 60.00032 * 3 2 1 34 34 H 1.08998 * 109.46993 * 299.99996 * 3 2 1 35 35 H 1.08998 * 109.47430 * 54.09641 * 5 4 3 36 36 H 1.09007 * 109.46833 * 174.10175 * 5 4 3 37 37 H 1.08998 * 109.47294 * 294.09152 * 5 4 3 38 38 H 1.09003 * 109.46782 * 195.09987 * 6 4 3 39 39 H 1.08999 * 109.47402 * 315.10012 * 6 4 3 40 40 H 1.09007 * 110.71564 * 271.93886 * 9 7 6 41 41 H 1.08997 * 110.72246 * 35.20519 * 9 7 6 42 42 H 1.09003 * 109.88699 * 97.22129 * 10 9 7 43 43 H 1.08995 * 109.88459 * 218.38901 * 10 9 7 44 44 H 1.09001 * 109.46727 * 293.09974 * 15 12 11 45 45 H 1.09003 * 109.46356 * 53.09421 * 15 12 11 46 46 H 0.97006 * 119.99640 * 180.02562 * 20 19 17 47 47 H 1.08997 * 117.49668 * 0.02562 * 25 16 15 48 48 H 1.08997 * 117.50056 * 145.02440 * 25 16 15 49 49 H 1.09000 * 117.49490 * 214.98098 * 26 16 15 50 50 H 1.09000 * 117.50199 * 0.02562 * 26 16 15 51 51 H 1.08999 * 110.37080 * 265.28797 * 27 11 10 52 52 H 1.09000 * 110.36955 * 142.96605 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5091 1.4425 0.0006 5 6 4.0360 0.8855 -1.2524 6 6 4.0354 2.7931 0.2387 7 6 3.8713 3.1511 1.7172 8 1 2.8219 3.3121 1.9639 9 6 4.4951 2.0594 2.6263 10 6 4.8571 2.8411 3.9067 11 7 4.9726 4.2588 3.5345 12 16 5.3229 5.5030 4.5697 13 8 4.7387 6.6441 3.9566 14 8 4.8741 5.0416 5.8366 15 6 7.1328 5.6207 4.5398 16 6 7.5768 6.8533 5.3301 17 6 7.0524 6.9450 6.7399 18 1 6.1530 7.5063 6.9461 19 6 7.7207 6.3124 7.7666 20 7 7.2919 6.4343 9.0039 21 14 9.2352 5.2821 7.4002 22 1 10.4461 6.1386 7.4731 23 1 9.3423 4.1874 8.3978 24 1 9.1210 4.7012 6.0383 25 6 7.7570 8.1612 4.5568 26 6 8.9823 7.3954 5.0624 27 6 4.7258 4.3892 2.0870 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.6039 1.4207 -2.0980 36 1 5.1206 0.9930 -1.2700 37 1 3.7745 -0.1706 -1.3188 38 1 5.0920 2.8234 -0.0273 39 1 3.4863 3.5100 -0.3718 40 1 3.7677 1.2774 2.8446 41 1 5.3888 1.6384 2.1658 42 1 4.0715 2.7162 4.6519 43 1 5.8073 2.4835 4.3032 44 1 7.5626 4.7260 4.9902 45 1 7.4741 5.7081 3.5083 46 1 7.7623 5.9895 9.7263 47 1 7.5588 8.1436 3.4852 48 1 7.4966 9.0880 5.0679 49 1 9.5274 7.8189 5.9060 50 1 9.5905 6.8743 4.3231 51 1 5.6679 4.3772 1.5389 52 1 4.1755 5.3063 1.8770 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346455124.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:50 Heat of formation + Delta-G solvation = -68.481943 kcal Electronic energy + Delta-G solvation = -29528.150272 eV Core-core repulsion = 25654.515233 eV Total energy + Delta-G solvation = -3873.635039 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 2.70 seconds Orbital eigenvalues (eV) -40.03886 -38.84386 -38.18389 -38.00139 -36.79885 -34.32645 -34.27500 -32.21184 -30.32800 -30.11046 -27.86232 -27.63882 -26.98879 -23.64850 -23.34544 -23.17886 -21.89297 -21.22802 -20.79284 -19.84124 -18.79308 -18.38589 -17.44417 -16.94224 -16.93668 -16.57949 -16.28088 -16.18316 -15.53557 -15.40251 -14.99081 -14.88341 -14.78174 -14.56852 -14.37096 -14.09356 -14.04568 -13.78957 -13.65137 -13.19497 -13.09451 -13.02777 -12.96944 -12.76181 -12.63222 -12.58912 -12.40806 -12.35253 -12.19261 -12.08029 -11.98638 -11.79344 -11.76004 -11.70299 -11.63387 -11.49965 -11.23298 -10.99400 -10.72204 -10.35935 -9.81653 -9.19871 -8.34667 -6.49828 -0.62381 1.32644 1.34906 1.47018 1.95800 2.33415 2.91398 2.96254 2.98540 3.14506 3.28875 3.62963 3.82599 3.86300 3.88623 4.08325 4.15556 4.19619 4.33083 4.34319 4.38798 4.43765 4.50762 4.53836 4.58373 4.60006 4.60970 4.64955 4.75619 4.79427 4.82278 4.85104 4.91584 4.97134 4.98191 5.04563 5.08798 5.13926 5.16229 5.18681 5.24675 5.26566 5.35503 5.45097 5.46060 5.46446 5.58625 5.60646 6.15737 6.18147 6.21429 6.62404 7.24891 8.82032 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.019933 B = 0.002698 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.388344 B =10377.366990 C =10558.669258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C 0.052 3.948 4 N -0.547 5.547 5 C 0.024 3.976 6 C 0.069 3.931 7 C -0.088 4.088 8 H 0.072 0.928 9 C -0.087 4.087 10 C 0.103 3.897 11 N -1.020 6.020 12 S 2.632 3.368 13 O -0.993 6.993 14 O -0.991 6.991 15 C -0.570 4.570 16 C -0.035 4.035 17 C -0.524 4.524 18 H 0.025 0.975 19 C 0.028 3.972 20 N -0.939 5.939 21 Si 0.933 3.067 22 H -0.258 1.258 23 H -0.293 1.293 24 H -0.215 1.215 25 C -0.168 4.168 26 C -0.167 4.167 27 C 0.111 3.889 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.032 0.968 35 H 0.025 0.975 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.042 0.958 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.051 0.949 43 H 0.072 0.928 44 H 0.132 0.868 45 H 0.157 0.843 46 H 0.269 0.731 47 H 0.114 0.886 48 H 0.078 0.922 49 H 0.079 0.921 50 H 0.118 0.882 51 H 0.093 0.907 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.850 -15.012 -25.475 29.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.075 4.075 4 N -0.270 5.270 5 C -0.124 4.124 6 C -0.059 4.059 7 C -0.108 4.108 8 H 0.091 0.909 9 C -0.126 4.126 10 C -0.022 4.022 11 N -0.859 5.859 12 S 2.732 3.268 13 O -0.983 6.983 14 O -0.981 6.981 15 C -0.703 4.703 16 C -0.037 4.037 17 C -0.561 4.561 18 H 0.044 0.956 19 C -0.171 4.171 20 N -0.576 5.576 21 Si 0.755 3.245 22 H -0.182 1.182 23 H -0.220 1.220 24 H -0.137 1.137 25 C -0.205 4.205 26 C -0.206 4.206 27 C -0.014 4.014 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.050 0.950 35 H 0.044 0.956 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.110 0.890 39 H 0.060 0.940 40 H 0.105 0.895 41 H 0.111 0.889 42 H 0.070 0.930 43 H 0.090 0.910 44 H 0.150 0.850 45 H 0.175 0.825 46 H 0.078 0.922 47 H 0.132 0.868 48 H 0.097 0.903 49 H 0.098 0.902 50 H 0.136 0.864 51 H 0.111 0.889 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.335 -14.783 -24.364 28.826 hybrid contribution 0.422 0.415 0.299 0.663 sum -3.913 -14.368 -24.065 28.300 Atomic orbital electron populations 1.21738 0.95408 1.02083 1.01733 1.21477 0.95571 0.95850 1.02460 1.22238 0.87151 0.97632 1.00517 1.61940 1.07733 1.21847 1.35507 1.22452 1.00646 1.00366 0.88919 1.22015 1.01282 0.89006 0.93600 1.22294 0.99108 0.93787 0.95647 0.90941 1.22393 1.01957 0.96468 0.91810 1.22019 1.01508 0.79263 0.99453 1.58676 1.86384 1.20409 1.20461 1.04054 0.78602 0.72201 0.71921 1.93434 1.76536 1.50842 1.77534 1.93507 1.80765 1.80897 1.42952 1.30191 1.23943 1.07000 1.09163 1.18748 1.00210 0.91062 0.93712 1.20478 1.11091 1.33837 0.90679 0.95632 1.25989 1.00842 0.96274 0.94019 1.70063 1.42367 1.44276 1.00939 0.86007 0.79149 0.78781 0.80600 1.18221 1.22014 1.13730 1.23063 1.02397 0.95301 0.99753 1.23087 0.90401 1.04183 1.02892 1.22295 1.00777 0.99496 0.78846 0.93047 0.92673 0.92044 0.91604 0.91785 0.91464 0.94956 0.95617 0.90703 0.90818 0.88975 0.93975 0.89511 0.88932 0.93038 0.90998 0.85032 0.82531 0.92204 0.86757 0.90324 0.90222 0.86368 0.88852 0.91065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.91 71.98 0.71 -0.91 16 2 C -0.12 -1.33 5.86 30.59 0.18 -1.15 16 3 C 0.05 0.68 4.79 86.30 0.41 1.10 16 4 N -0.55 -6.98 4.16 -922.44 -3.84 -10.82 16 5 C 0.02 0.24 9.23 127.69 1.18 1.41 16 6 C 0.07 0.90 4.65 86.30 0.40 1.30 16 7 C -0.09 -1.55 2.95 -9.40 -0.03 -1.58 16 8 H 0.07 1.43 7.22 -2.39 -0.02 1.41 16 9 C -0.09 -1.56 5.91 31.78 0.19 -1.37 16 10 C 0.10 2.65 6.90 86.73 0.60 3.25 16 11 N -1.02 -30.60 3.62 -506.45 -1.83 -32.44 16 12 S 2.63 110.27 5.14 -56.49 -0.29 109.98 16 13 O -0.99 -45.36 17.28 -127.65 -2.21 -47.57 16 14 O -0.99 -52.33 16.97 -127.65 -2.17 -54.50 16 15 C -0.57 -21.19 5.88 71.98 0.42 -20.77 16 16 C -0.03 -1.57 0.94 -52.93 -0.05 -1.62 16 17 C -0.52 -30.83 8.14 25.60 0.21 -30.62 16 18 H 0.03 1.74 8.06 -2.91 -0.02 1.72 16 19 C 0.03 1.69 5.47 84.65 0.46 2.15 16 20 N -0.94 -60.87 13.96 21.45 0.30 -60.57 16 21 Si 0.93 42.89 25.13 68.60 1.72 44.61 16 22 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 23 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 24 H -0.21 -8.34 5.37 99.48 0.53 -7.81 16 25 C -0.17 -6.55 9.92 30.62 0.30 -6.25 16 26 C -0.17 -6.31 7.75 30.62 0.24 -6.07 16 27 C 0.11 2.44 6.54 86.86 0.57 3.01 16 28 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.07 0.68 6.69 -2.38 -0.02 0.67 16 32 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.07 1.00 6.83 -2.39 -0.02 0.99 16 34 H 0.03 0.42 8.06 -2.39 -0.02 0.40 16 35 H 0.03 0.25 8.06 -2.39 -0.02 0.23 16 36 H 0.07 0.63 7.84 -2.38 -0.02 0.61 16 37 H 0.07 0.67 6.76 -2.39 -0.02 0.65 16 38 H 0.09 0.97 7.53 -2.39 -0.02 0.95 16 39 H 0.04 0.54 8.01 -2.39 -0.02 0.52 16 40 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 41 H 0.09 1.38 8.04 -2.39 -0.02 1.36 16 42 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.13 4.71 6.04 -2.39 -0.01 4.70 16 45 H 0.16 4.14 8.08 -2.39 -0.02 4.12 16 46 H 0.27 16.17 8.31 -92.70 -0.77 15.40 16 47 H 0.11 3.62 8.14 -2.39 -0.02 3.60 16 48 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 49 H 0.08 3.22 7.47 -2.39 -0.02 3.20 16 50 H 0.12 3.48 8.14 -2.39 -0.02 3.46 16 51 H 0.09 1.49 7.88 -2.39 -0.02 1.47 16 52 H 0.07 1.72 7.67 -2.39 -0.02 1.70 16 Total: -1.00 -81.21 410.63 -1.82 -83.04 By element: Atomic # 1 Polarization: 25.70 SS G_CDS: 0.69 Total: 26.39 kcal Atomic # 6 Polarization: -63.91 SS G_CDS: 5.80 Total: -58.12 kcal Atomic # 7 Polarization: -98.46 SS G_CDS: -5.37 Total: -103.83 kcal Atomic # 8 Polarization: -97.70 SS G_CDS: -4.37 Total: -102.07 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 1.72 Total: 44.61 kcal Atomic # 16 Polarization: 110.27 SS G_CDS: -0.29 Total: 109.98 kcal Total: -81.21 -1.82 -83.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346455124.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.554 kcal (2) G-P(sol) polarization free energy of solvation -81.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.70 seconds