Wall clock time and date at job start Wed Apr 1 2020 03:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47177 * 2 1 4 4 N 1.46501 * 109.46914 * 119.99947 * 2 1 3 5 5 C 1.46766 * 124.34982 * 119.99495 * 4 2 1 6 6 C 1.54480 * 105.47518 * 196.99648 * 5 4 2 7 7 C 1.54628 * 101.76432 * 334.58290 * 6 5 4 8 8 H 1.08994 * 110.60381 * 266.06813 * 7 6 5 9 9 N 1.46503 * 110.48402 * 143.47358 * 7 6 5 10 10 C 1.34781 * 119.99592 * 158.77513 * 9 7 6 11 11 O 1.21283 * 120.00041 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99703 * 180.02562 * 10 9 7 13 13 C 1.52994 * 109.46861 * 179.97438 * 12 10 9 14 14 H 1.09001 * 109.47351 * 54.99645 * 13 12 10 15 15 C 1.50708 * 109.47283 * 294.99550 * 13 12 10 16 16 H 1.08000 * 119.99595 * 121.36830 * 15 13 12 17 17 C 1.37877 * 120.00078 * 301.37175 * 15 13 12 18 18 N 1.31511 * 119.99820 * 6.17287 * 17 15 13 19 19 Si 1.86794 * 120.00017 * 186.17002 * 17 15 13 20 20 H 1.48505 * 109.47274 * 89.99685 * 19 17 15 21 21 H 1.48498 * 109.47412 * 209.99948 * 19 17 15 22 22 H 1.48499 * 109.47229 * 330.00201 * 19 17 15 23 23 C 1.50704 * 109.47316 * 175.00179 * 13 12 10 24 24 C 1.38236 * 120.00125 * 211.37375 * 23 13 12 25 25 C 1.38229 * 119.99905 * 179.80496 * 24 23 13 26 26 C 1.38234 * 120.00145 * 0.41562 * 25 24 23 27 27 C 1.38236 * 119.99972 * 359.81529 * 26 25 24 28 28 C 1.38232 * 120.00075 * 359.97438 * 27 26 25 29 29 C 1.34416 * 124.34999 * 299.97492 * 4 2 1 30 30 O 1.21277 * 124.94213 * 359.57730 * 29 4 2 31 31 H 1.08994 * 109.47579 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46818 * 300.00352 * 1 2 3 33 33 H 1.08997 * 109.46878 * 59.99593 * 1 2 3 34 34 H 1.09000 * 109.46818 * 239.99648 * 2 1 3 35 35 H 1.09002 * 109.46843 * 180.02562 * 3 2 1 36 36 H 1.09001 * 109.47327 * 299.99531 * 3 2 1 37 37 H 1.09000 * 109.47535 * 60.00087 * 3 2 1 38 38 H 1.09002 * 110.24349 * 316.00115 * 5 4 2 39 39 H 1.09000 * 110.24372 * 77.90674 * 5 4 2 40 40 H 1.08995 * 110.96718 * 216.46734 * 6 5 4 41 41 H 1.08999 * 110.96939 * 92.70390 * 6 5 4 42 42 H 0.96994 * 120.00151 * 338.78008 * 9 7 6 43 43 H 1.08993 * 109.47243 * 299.99777 * 12 10 9 44 44 H 1.09006 * 109.46910 * 59.99729 * 12 10 9 45 45 H 0.97002 * 119.99791 * 179.97438 * 18 17 15 46 46 H 1.07997 * 119.99820 * 359.97438 * 24 23 13 47 47 H 1.08004 * 120.00253 * 180.20141 * 25 24 23 48 48 H 1.08005 * 120.00285 * 179.78853 * 26 25 24 49 49 H 1.08003 * 120.00255 * 179.97438 * 27 26 25 50 50 H 1.07996 * 120.00419 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8655 -1.8889 1.1728 6 6 2.7611 -2.4951 2.5898 7 6 2.4045 -1.2529 3.4388 8 1 3.3048 -0.8031 3.8574 9 7 1.4686 -1.6132 4.5067 10 6 1.3550 -0.8282 5.5964 11 8 2.0279 0.1762 5.6930 12 6 0.3926 -1.1991 6.6952 13 6 0.4588 -0.1499 7.8067 14 1 0.2768 0.8385 7.3847 15 6 1.8236 -0.1799 8.4452 16 1 2.4374 0.7087 8.4494 17 6 2.2886 -1.3418 9.0239 18 7 1.5961 -2.4543 8.9133 19 14 3.9023 -1.3356 9.9648 20 1 3.6414 -1.0224 11.3929 21 1 4.5416 -2.6718 9.8599 22 1 4.8066 -0.3076 9.3899 23 6 -0.5889 -0.4530 8.8467 24 6 -1.1807 0.5778 9.5525 25 6 -2.1446 0.3001 10.5035 26 6 -2.5106 -1.0090 10.7549 27 6 -1.9154 -2.0401 10.0525 28 6 -0.9546 -1.7622 9.0983 29 6 1.7484 -0.3080 2.4562 30 8 1.0771 0.6549 2.7610 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 1.8933 -0.5139 -0.8900 35 1 3.1300 1.4424 -0.0005 36 1 1.6768 1.9563 -0.8900 37 1 1.6767 1.9563 0.8900 38 1 2.4963 -2.5973 0.4312 39 1 3.8977 -1.6168 0.9525 40 1 3.7143 -2.9210 2.9030 41 1 1.9678 -3.2411 2.6375 42 1 0.9307 -2.4167 4.4295 43 1 -0.6197 -1.2397 6.2932 44 1 0.6621 -2.1746 7.1002 45 1 1.9235 -3.2718 9.3201 46 1 -0.8919 1.6003 9.3589 47 1 -2.6093 1.1056 11.0527 48 1 -3.2613 -1.2263 11.5004 49 1 -2.2010 -3.0630 10.2492 50 1 -0.4892 -2.5677 8.5498 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356118565.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:41 Heat of formation + Delta-G solvation = -39.400316 kcal Electronic energy + Delta-G solvation = -30889.702334 eV Core-core repulsion = 26881.884418 eV Total energy + Delta-G solvation = -4007.817916 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.69251 -38.72807 -37.88740 -36.30484 -35.45879 -34.14182 -32.93730 -31.03140 -29.81256 -29.48396 -28.40863 -27.31355 -27.02324 -25.51631 -22.81753 -22.47195 -21.81195 -21.34086 -20.14914 -19.15622 -18.77985 -17.11110 -16.59169 -16.42972 -15.83632 -15.56394 -15.29707 -14.94622 -14.67806 -14.32518 -13.92361 -13.82616 -13.71397 -13.69347 -13.42557 -13.08554 -12.91759 -12.63658 -12.58114 -12.24895 -12.16947 -12.12442 -11.92896 -11.64144 -11.46724 -11.39472 -11.34567 -11.21972 -11.11462 -10.88822 -10.73738 -10.35768 -10.14941 -9.91889 -9.78424 -9.25565 -9.14377 -8.76225 -8.63669 -8.42281 -8.28697 -7.76593 -7.40120 -5.95960 -4.03245 2.52285 2.61070 2.68740 2.89144 3.32642 3.38990 3.45556 3.78224 3.87296 4.38872 4.41263 4.46243 4.75356 4.76483 4.92881 4.96190 5.00873 5.03658 5.24139 5.27824 5.45317 5.48450 5.53571 5.63507 5.69087 5.73399 5.80870 5.83993 5.93614 6.03090 6.09332 6.14239 6.17006 6.45380 6.51911 6.61219 6.67197 6.77399 6.82571 6.95954 7.16636 7.18354 7.24482 7.31893 7.53714 7.58827 7.74041 8.00393 8.12861 8.23125 8.26957 8.36662 8.41119 8.94639 9.30541 9.59859 10.98776 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013069 B = 0.003155 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.911390 B = 8873.696521 C = 9956.893423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.155 3.845 3 C -0.169 4.169 4 N -0.625 5.625 5 C 0.107 3.893 6 C -0.137 4.137 7 C 0.119 3.881 8 H 0.118 0.882 9 N -0.732 5.732 10 C 0.529 3.471 11 O -0.515 6.515 12 C -0.136 4.136 13 C 0.087 3.913 14 H 0.037 0.963 15 C -0.467 4.467 16 H 0.060 0.940 17 C 0.060 3.940 18 N -0.891 5.891 19 Si 0.891 3.109 20 H -0.282 1.282 21 H -0.288 1.288 22 H -0.275 1.275 23 C -0.030 4.030 24 C -0.132 4.132 25 C -0.142 4.142 26 C -0.154 4.154 27 C -0.145 4.145 28 C -0.076 4.076 29 C 0.506 3.494 30 O -0.502 6.502 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.084 0.916 35 H 0.055 0.945 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.396 0.604 43 H 0.050 0.950 44 H 0.137 0.863 45 H 0.260 0.740 46 H 0.106 0.894 47 H 0.101 0.899 48 H 0.099 0.901 49 H 0.101 0.899 50 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.045 -4.457 -16.587 17.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.052 3.948 3 C -0.227 4.227 4 N -0.363 5.363 5 C -0.017 4.017 6 C -0.176 4.176 7 C 0.009 3.991 8 H 0.136 0.864 9 N -0.388 5.388 10 C 0.318 3.682 11 O -0.387 6.387 12 C -0.176 4.176 13 C 0.068 3.932 14 H 0.056 0.944 15 C -0.505 4.505 16 H 0.078 0.922 17 C -0.139 4.139 18 N -0.532 5.532 19 Si 0.719 3.281 20 H -0.208 1.208 21 H -0.214 1.214 22 H -0.200 1.200 23 C -0.031 4.031 24 C -0.150 4.150 25 C -0.161 4.161 26 C -0.172 4.172 27 C -0.163 4.163 28 C -0.094 4.094 29 C 0.291 3.709 30 O -0.374 6.374 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.102 0.898 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.115 0.885 41 H 0.106 0.894 42 H 0.230 0.770 43 H 0.068 0.932 44 H 0.154 0.846 45 H 0.071 0.929 46 H 0.124 0.876 47 H 0.119 0.881 48 H 0.117 0.883 49 H 0.119 0.881 50 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.899 -3.293 -16.304 16.658 hybrid contribution 0.788 -0.576 0.606 1.149 sum -0.111 -3.869 -15.698 16.168 Atomic orbital electron populations 1.22179 0.94839 1.02242 1.03296 1.20879 0.94394 0.93098 0.86382 1.22190 1.01185 0.95982 1.03332 1.48476 1.51999 1.29646 1.06141 1.22029 0.95081 0.86696 0.97865 1.22892 1.04222 0.97052 0.93414 1.21388 0.95069 0.94640 0.87982 0.86431 1.46016 1.44311 1.29091 1.19376 1.21168 0.83586 0.82206 0.81223 1.90622 1.44710 1.25609 1.77805 1.21973 0.94559 1.07366 0.93750 1.17643 0.92787 0.93499 0.89269 0.94442 1.21034 0.98797 0.96925 1.33705 0.92167 1.24858 0.97165 0.95499 0.96382 1.69539 1.38369 0.99755 1.45493 0.86583 0.83944 0.77124 0.80408 1.20833 1.21421 1.20002 1.20371 0.92522 0.92614 0.97552 1.20938 0.97527 0.98849 0.97656 1.20799 0.99756 0.95897 0.99618 1.20779 1.01798 0.93416 1.01240 1.21080 0.98838 0.97593 0.98780 1.21622 0.92912 0.97788 0.97122 1.21473 0.80315 0.85609 0.83481 1.90707 1.38012 1.27679 1.81040 0.92609 0.90860 0.91696 0.89813 0.92585 0.91707 0.90772 0.90440 0.91070 0.88486 0.89397 0.76960 0.93175 0.84598 0.92941 0.87612 0.88084 0.88313 0.88080 0.83385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.71 9.20 37.16 0.34 -1.37 16 2 C 0.15 1.52 3.47 -67.93 -0.24 1.28 16 3 C -0.17 -1.77 9.20 37.15 0.34 -1.43 16 4 N -0.63 -7.08 2.83 -164.84 -0.47 -7.55 16 5 C 0.11 0.83 7.30 -3.12 -0.02 0.81 16 6 C -0.14 -1.22 6.87 -25.10 -0.17 -1.39 16 7 C 0.12 1.73 3.23 -67.94 -0.22 1.51 16 8 H 0.12 1.95 7.66 -51.93 -0.40 1.55 16 9 N -0.73 -12.22 5.15 -53.81 -0.28 -12.50 16 10 C 0.53 11.61 7.53 -10.98 -0.08 11.53 16 11 O -0.51 -13.37 14.69 5.55 0.08 -13.29 16 12 C -0.14 -3.01 4.22 -27.89 -0.12 -3.13 16 13 C 0.09 2.17 1.98 -92.92 -0.18 1.98 16 14 H 0.04 0.97 7.89 -51.93 -0.41 0.56 16 15 C -0.47 -12.73 7.27 -34.44 -0.25 -12.98 16 16 H 0.06 1.75 7.82 -52.49 -0.41 1.33 16 17 C 0.06 1.58 5.14 -17.82 -0.09 1.49 16 18 N -0.89 -22.49 7.74 55.43 0.43 -22.06 16 19 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 C -0.03 -0.70 4.68 -104.62 -0.49 -1.19 16 24 C -0.13 -2.90 9.70 -39.59 -0.38 -3.28 16 25 C -0.14 -2.82 10.05 -39.59 -0.40 -3.22 16 26 C -0.15 -2.96 10.05 -39.58 -0.40 -3.36 16 27 C -0.14 -2.92 10.05 -39.58 -0.40 -3.32 16 28 C -0.08 -1.70 7.56 -39.58 -0.30 -2.00 16 29 C 0.51 7.96 7.04 -10.86 -0.08 7.89 16 30 O -0.50 -10.17 15.08 5.56 0.08 -10.09 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 1.00 6.80 -51.93 -0.35 0.64 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.60 8.07 -51.93 -0.42 0.18 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 1.04 6.77 -51.93 -0.35 0.68 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.09 0.67 7.80 -51.93 -0.41 0.27 16 42 H 0.40 5.40 8.38 -40.82 -0.34 5.05 16 43 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.14 3.10 4.65 -51.93 -0.24 2.86 16 45 H 0.26 6.41 8.31 -40.82 -0.34 6.07 16 46 H 0.11 2.22 8.06 -52.49 -0.42 1.80 16 47 H 0.10 1.71 8.06 -52.48 -0.42 1.29 16 48 H 0.10 1.61 8.06 -52.48 -0.42 1.19 16 49 H 0.10 1.80 8.06 -52.48 -0.42 1.37 16 50 H 0.15 3.37 4.97 -52.49 -0.26 3.11 16 LS Contribution 397.36 15.07 5.99 5.99 Total: -1.00 -33.01 397.36 -10.12 -43.12 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: -7.80 Total: 10.12 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: -3.14 Total: -10.18 kcal Atomic # 7 Polarization: -41.79 SS G_CDS: -0.32 Total: -42.10 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: 0.17 Total: -23.38 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.01 -10.12 -43.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356118565.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.724 kcal (2) G-P(sol) polarization free energy of solvation -33.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds