Wall clock time and date at job start Wed Apr 1 2020 03:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47177 * 2 1 4 4 N 1.46501 * 109.46914 * 119.99947 * 2 1 3 5 5 C 1.46766 * 124.34982 * 119.99495 * 4 2 1 6 6 C 1.54480 * 105.47518 * 196.99648 * 5 4 2 7 7 C 1.54628 * 101.76432 * 334.58290 * 6 5 4 8 8 H 1.08994 * 110.60381 * 266.06813 * 7 6 5 9 9 N 1.46503 * 110.48402 * 143.47358 * 7 6 5 10 10 C 1.34781 * 119.99592 * 158.77513 * 9 7 6 11 11 O 1.21283 * 120.00041 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99703 * 180.02562 * 10 9 7 13 13 C 1.52994 * 109.46861 * 179.97438 * 12 10 9 14 14 H 1.09001 * 109.47351 * 54.99645 * 13 12 10 15 15 C 1.50708 * 109.47283 * 294.99550 * 13 12 10 16 16 H 1.08000 * 119.99595 * 121.36830 * 15 13 12 17 17 C 1.37877 * 120.00078 * 301.37175 * 15 13 12 18 18 N 1.31511 * 119.99820 * 6.17287 * 17 15 13 19 19 Si 1.86794 * 120.00017 * 186.17002 * 17 15 13 20 20 H 1.48505 * 109.47274 * 89.99685 * 19 17 15 21 21 H 1.48498 * 109.47412 * 209.99948 * 19 17 15 22 22 H 1.48499 * 109.47229 * 330.00201 * 19 17 15 23 23 C 1.50704 * 109.47316 * 175.00179 * 13 12 10 24 24 C 1.38236 * 120.00125 * 211.37375 * 23 13 12 25 25 C 1.38229 * 119.99905 * 179.80496 * 24 23 13 26 26 C 1.38234 * 120.00145 * 0.41562 * 25 24 23 27 27 C 1.38236 * 119.99972 * 359.81529 * 26 25 24 28 28 C 1.38232 * 120.00075 * 359.97438 * 27 26 25 29 29 C 1.34416 * 124.34999 * 299.97492 * 4 2 1 30 30 O 1.21277 * 124.94213 * 359.57730 * 29 4 2 31 31 H 1.08994 * 109.47579 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46818 * 300.00352 * 1 2 3 33 33 H 1.08997 * 109.46878 * 59.99593 * 1 2 3 34 34 H 1.09000 * 109.46818 * 239.99648 * 2 1 3 35 35 H 1.09002 * 109.46843 * 180.02562 * 3 2 1 36 36 H 1.09001 * 109.47327 * 299.99531 * 3 2 1 37 37 H 1.09000 * 109.47535 * 60.00087 * 3 2 1 38 38 H 1.09002 * 110.24349 * 316.00115 * 5 4 2 39 39 H 1.09000 * 110.24372 * 77.90674 * 5 4 2 40 40 H 1.08995 * 110.96718 * 216.46734 * 6 5 4 41 41 H 1.08999 * 110.96939 * 92.70390 * 6 5 4 42 42 H 0.96994 * 120.00151 * 338.78008 * 9 7 6 43 43 H 1.08993 * 109.47243 * 299.99777 * 12 10 9 44 44 H 1.09006 * 109.46910 * 59.99729 * 12 10 9 45 45 H 0.97002 * 119.99791 * 179.97438 * 18 17 15 46 46 H 1.07997 * 119.99820 * 359.97438 * 24 23 13 47 47 H 1.08004 * 120.00253 * 180.20141 * 25 24 23 48 48 H 1.08005 * 120.00285 * 179.78853 * 26 25 24 49 49 H 1.08003 * 120.00255 * 179.97438 * 27 26 25 50 50 H 1.07996 * 120.00419 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8655 -1.8889 1.1728 6 6 2.7611 -2.4951 2.5898 7 6 2.4045 -1.2529 3.4388 8 1 3.3048 -0.8031 3.8574 9 7 1.4686 -1.6132 4.5067 10 6 1.3550 -0.8282 5.5964 11 8 2.0279 0.1762 5.6930 12 6 0.3926 -1.1991 6.6952 13 6 0.4588 -0.1499 7.8067 14 1 0.2768 0.8385 7.3847 15 6 1.8236 -0.1799 8.4452 16 1 2.4374 0.7087 8.4494 17 6 2.2886 -1.3418 9.0239 18 7 1.5961 -2.4543 8.9133 19 14 3.9023 -1.3356 9.9648 20 1 3.6414 -1.0224 11.3929 21 1 4.5416 -2.6718 9.8599 22 1 4.8066 -0.3076 9.3899 23 6 -0.5889 -0.4530 8.8467 24 6 -1.1807 0.5778 9.5525 25 6 -2.1446 0.3001 10.5035 26 6 -2.5106 -1.0090 10.7549 27 6 -1.9154 -2.0401 10.0525 28 6 -0.9546 -1.7622 9.0983 29 6 1.7484 -0.3080 2.4562 30 8 1.0771 0.6549 2.7610 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 1.8933 -0.5139 -0.8900 35 1 3.1300 1.4424 -0.0005 36 1 1.6768 1.9563 -0.8900 37 1 1.6767 1.9563 0.8900 38 1 2.4963 -2.5973 0.4312 39 1 3.8977 -1.6168 0.9525 40 1 3.7143 -2.9210 2.9030 41 1 1.9678 -3.2411 2.6375 42 1 0.9307 -2.4167 4.4295 43 1 -0.6197 -1.2397 6.2932 44 1 0.6621 -2.1746 7.1002 45 1 1.9235 -3.2718 9.3201 46 1 -0.8919 1.6003 9.3589 47 1 -2.6093 1.1056 11.0527 48 1 -3.2613 -1.2263 11.5004 49 1 -2.2010 -3.0630 10.2492 50 1 -0.4892 -2.5677 8.5498 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356118565.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:40 Heat of formation + Delta-G solvation = -59.886359 kcal Electronic energy + Delta-G solvation = -30890.590676 eV Core-core repulsion = 26881.884418 eV Total energy + Delta-G solvation = -4008.706258 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.81073 -40.39639 -39.51556 -37.48467 -36.62439 -35.92896 -34.24240 -32.95197 -31.43763 -30.67717 -29.84872 -28.35231 -28.14957 -27.22174 -24.47181 -23.44729 -23.07128 -22.74691 -21.76108 -20.87289 -19.87728 -18.52938 -18.00466 -17.79654 -17.42257 -16.89447 -16.85805 -16.61401 -15.90075 -15.67868 -15.50556 -15.36495 -14.97314 -14.74100 -14.62125 -14.47309 -14.37917 -14.04205 -13.80923 -13.70527 -13.45939 -13.22447 -13.17633 -13.02193 -12.91129 -12.79929 -12.74802 -12.67007 -12.27635 -12.22097 -12.15312 -11.95636 -11.90296 -11.73144 -11.12540 -11.08981 -11.06336 -10.54412 -10.31884 -9.73725 -9.66999 -9.42082 -9.12644 -7.95610 -6.09446 0.85979 0.97511 1.37204 1.39913 1.48226 1.49380 1.90322 2.15073 2.46291 2.56600 3.19609 3.34840 3.42770 3.52456 3.91659 4.02589 4.05883 4.11969 4.27082 4.29989 4.33440 4.40308 4.50024 4.60829 4.65920 4.68348 4.69367 4.79883 4.81303 4.84990 4.87834 4.89958 4.99507 5.06964 5.09113 5.13721 5.22638 5.28273 5.38657 5.51210 5.56941 5.65402 5.67493 5.76118 5.91228 5.93999 6.09473 6.15881 6.37756 6.41375 6.56699 6.76509 6.85100 7.23134 7.52205 7.65031 8.95363 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013069 B = 0.003155 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.911390 B = 8873.696521 C = 9956.893423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.149 3.851 3 C -0.166 4.166 4 N -0.614 5.614 5 C 0.104 3.896 6 C -0.122 4.122 7 C 0.107 3.893 8 H 0.090 0.910 9 N -0.715 5.715 10 C 0.524 3.476 11 O -0.567 6.567 12 C -0.126 4.126 13 C 0.089 3.911 14 H 0.002 0.998 15 C -0.494 4.494 16 H 0.023 0.977 17 C 0.038 3.962 18 N -0.883 5.883 19 Si 0.933 3.067 20 H -0.282 1.282 21 H -0.271 1.271 22 H -0.291 1.291 23 C -0.055 4.055 24 C -0.155 4.155 25 C -0.140 4.140 26 C -0.147 4.147 27 C -0.146 4.146 28 C -0.088 4.088 29 C 0.494 3.506 30 O -0.563 6.563 31 H 0.065 0.935 32 H 0.028 0.972 33 H 0.086 0.914 34 H 0.130 0.870 35 H 0.059 0.941 36 H 0.088 0.912 37 H 0.028 0.972 38 H 0.118 0.882 39 H 0.091 0.909 40 H 0.118 0.882 41 H 0.108 0.892 42 H 0.413 0.587 43 H 0.064 0.936 44 H 0.135 0.865 45 H 0.265 0.735 46 H 0.099 0.901 47 H 0.132 0.868 48 H 0.139 0.861 49 H 0.130 0.870 50 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.569 -7.900 -17.845 19.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.047 3.953 3 C -0.225 4.225 4 N -0.349 5.349 5 C -0.018 4.018 6 C -0.160 4.160 7 C -0.002 4.002 8 H 0.108 0.892 9 N -0.370 5.370 10 C 0.313 3.687 11 O -0.444 6.444 12 C -0.166 4.166 13 C 0.070 3.930 14 H 0.020 0.980 15 C -0.532 4.532 16 H 0.041 0.959 17 C -0.161 4.161 18 N -0.522 5.522 19 Si 0.761 3.239 20 H -0.208 1.208 21 H -0.195 1.195 22 H -0.217 1.217 23 C -0.056 4.056 24 C -0.173 4.173 25 C -0.158 4.158 26 C -0.165 4.165 27 C -0.164 4.164 28 C -0.107 4.107 29 C 0.280 3.720 30 O -0.440 6.440 31 H 0.084 0.916 32 H 0.047 0.953 33 H 0.105 0.895 34 H 0.148 0.852 35 H 0.078 0.922 36 H 0.107 0.893 37 H 0.047 0.953 38 H 0.136 0.864 39 H 0.109 0.891 40 H 0.136 0.864 41 H 0.126 0.874 42 H 0.250 0.750 43 H 0.083 0.917 44 H 0.152 0.848 45 H 0.075 0.925 46 H 0.117 0.883 47 H 0.150 0.850 48 H 0.156 0.844 49 H 0.148 0.852 50 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.424 -6.834 -17.632 18.963 hybrid contribution 0.904 0.523 0.942 1.406 sum -0.520 -6.311 -16.690 17.851 Atomic orbital electron populations 1.22138 0.95287 1.02490 1.02204 1.21171 0.94145 0.92908 0.87033 1.22166 1.01363 0.96677 1.02244 1.48594 1.51053 1.30233 1.05045 1.22402 0.95752 0.85719 0.97896 1.22969 1.05887 0.94595 0.92528 1.21635 0.93240 0.97693 0.87679 0.89232 1.45720 1.44287 1.28516 1.18520 1.21192 0.83032 0.82027 0.82478 1.90596 1.46694 1.27900 1.79219 1.21799 0.95457 1.06003 0.93326 1.17507 0.92545 0.92563 0.90430 0.97982 1.20898 1.00051 0.96318 1.35928 0.95855 1.25197 0.99061 0.95273 0.96618 1.69604 1.38371 0.99475 1.44736 0.85956 0.81516 0.77280 0.79186 1.20842 1.19538 1.21715 1.20325 0.93313 0.93919 0.98008 1.21102 0.98898 0.98430 0.98894 1.21154 0.98517 0.97555 0.98553 1.21232 1.01642 0.92587 1.01059 1.21418 0.97753 0.99529 0.97675 1.21572 0.94114 0.96750 0.98241 1.21682 0.79938 0.85027 0.85327 1.90680 1.40921 1.30138 1.82288 0.91615 0.95255 0.89473 0.85181 0.92169 0.89328 0.95305 0.86425 0.89075 0.86388 0.87400 0.74987 0.91749 0.84763 0.92495 0.88290 0.84977 0.84364 0.85193 0.84138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.17 9.20 71.98 0.66 -2.51 16 2 C 0.15 2.61 3.47 44.99 0.16 2.76 16 3 C -0.17 -3.45 9.20 71.98 0.66 -2.79 16 4 N -0.61 -12.97 2.83 -794.03 -2.25 -15.22 16 5 C 0.10 1.19 7.30 86.83 0.63 1.83 16 6 C -0.12 -1.81 6.87 31.65 0.22 -1.59 16 7 C 0.11 3.18 3.23 44.99 0.15 3.32 16 8 H 0.09 3.18 7.66 -2.39 -0.02 3.16 16 9 N -0.72 -24.67 5.15 -442.55 -2.28 -26.95 16 10 C 0.52 24.52 7.53 87.66 0.66 25.18 16 11 O -0.57 -32.17 14.69 -3.04 -0.04 -32.21 16 12 C -0.13 -5.86 4.22 29.85 0.13 -5.73 16 13 C 0.09 4.73 1.98 -12.28 -0.02 4.71 16 14 H 0.00 0.10 7.89 -2.39 -0.02 0.08 16 15 C -0.49 -28.75 7.27 25.60 0.19 -28.56 16 16 H 0.02 1.47 7.82 -2.91 -0.02 1.45 16 17 C 0.04 2.05 5.14 84.66 0.44 2.49 16 18 N -0.88 -44.70 7.74 21.45 0.17 -44.54 16 19 Si 0.93 44.78 29.54 68.60 2.03 46.81 16 20 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 21 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 22 H -0.29 -14.66 7.11 99.48 0.71 -13.95 16 23 C -0.06 -2.68 4.68 -19.86 -0.09 -2.78 16 24 C -0.16 -7.02 9.70 22.27 0.22 -6.80 16 25 C -0.14 -5.29 10.05 22.27 0.22 -5.07 16 26 C -0.15 -5.18 10.05 22.27 0.22 -4.96 16 27 C -0.15 -5.54 10.05 22.27 0.22 -5.31 16 28 C -0.09 -3.93 7.56 22.27 0.17 -3.77 16 29 C 0.49 16.18 7.04 87.90 0.62 16.80 16 30 O -0.56 -24.88 15.08 -3.02 -0.05 -24.92 16 31 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.03 0.83 6.80 -2.39 -0.02 0.82 16 33 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.13 1.19 8.07 -2.39 -0.02 1.17 16 35 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.03 0.86 6.77 -2.39 -0.02 0.84 16 38 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.11 1.22 7.80 -2.39 -0.02 1.20 16 42 H 0.41 11.12 8.38 -92.71 -0.78 10.35 16 43 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16 44 H 0.14 6.29 4.65 -2.38 -0.01 6.28 16 45 H 0.26 12.79 8.31 -92.71 -0.77 12.02 16 46 H 0.10 4.45 8.06 -2.91 -0.02 4.43 16 47 H 0.13 4.11 8.06 -2.91 -0.02 4.09 16 48 H 0.14 3.80 8.06 -2.91 -0.02 3.78 16 49 H 0.13 4.14 8.06 -2.91 -0.02 4.12 16 50 H 0.14 6.39 4.97 -2.91 -0.01 6.37 16 Total: -1.00 -80.86 397.36 3.18 -77.68 By element: Atomic # 1 Polarization: 31.96 SS G_CDS: 0.17 Total: 32.13 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: 5.44 Total: -12.77 kcal Atomic # 7 Polarization: -82.34 SS G_CDS: -4.36 Total: -86.70 kcal Atomic # 8 Polarization: -57.05 SS G_CDS: -0.09 Total: -57.14 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -80.86 3.18 -77.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356118565.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.791 kcal (2) G-P(sol) polarization free energy of solvation -80.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds