Wall clock time and date at job start Wed Apr 1 2020 03:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50712 * 120.00104 * 2 1 4 4 N 1.46503 * 109.46647 * 124.99898 * 3 2 1 5 5 C 1.46496 * 120.00050 * 263.74436 * 4 3 2 6 6 C 1.50706 * 109.47354 * 270.00835 * 5 4 3 7 7 H 1.08004 * 119.99475 * 359.97438 * 6 5 4 8 8 C 1.37870 * 119.99887 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00380 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99693 * 179.97438 * 8 6 5 11 11 H 1.48493 * 109.47287 * 90.00045 * 10 8 6 12 12 H 1.48502 * 109.46932 * 209.99897 * 10 8 6 13 13 H 1.48502 * 109.47150 * 329.99502 * 10 8 6 14 14 C 1.34774 * 119.99793 * 83.75125 * 4 3 2 15 15 O 1.21549 * 119.99713 * 185.78344 * 14 4 3 16 16 C 1.47849 * 120.00219 * 5.78155 * 14 4 3 17 17 C 1.39598 * 120.14366 * 54.48521 * 16 14 4 18 18 C 1.37927 * 119.85431 * 180.02562 * 17 16 14 19 19 C 1.38383 * 120.14270 * 359.97438 * 18 17 16 20 20 C 1.38332 * 120.29525 * 359.97438 * 19 18 17 21 21 C 1.37976 * 120.14383 * 0.04164 * 20 19 18 22 22 C 1.50700 * 120.07443 * 179.97438 * 21 20 19 23 23 N 1.46900 * 109.47128 * 102.55629 * 22 21 20 24 24 C 1.47013 * 111.00226 * 292.72316 * 23 22 21 25 25 C 1.53092 * 109.26109 * 177.60556 * 24 23 22 26 26 O 1.43018 * 109.25901 * 56.85190 * 25 24 23 27 27 C 1.43019 * 113.73615 * 301.33278 * 26 25 24 28 28 C 1.47016 * 110.99996 * 169.09030 * 23 22 21 29 29 H 1.07993 * 120.00232 * 179.97438 * 1 2 3 30 30 H 1.08004 * 119.99994 * 0.02562 * 1 2 3 31 31 H 1.07997 * 120.00346 * 180.02562 * 2 1 3 32 32 H 1.09001 * 109.46536 * 5.00244 * 3 2 1 33 33 H 1.08994 * 109.46958 * 245.00343 * 3 2 1 34 34 H 1.09006 * 109.47317 * 30.00454 * 5 4 3 35 35 H 1.08994 * 109.47567 * 150.00209 * 5 4 3 36 36 H 0.97004 * 120.00236 * 179.97438 * 9 8 6 37 37 H 1.08008 * 120.07322 * 359.97438 * 17 16 14 38 38 H 1.08002 * 119.92903 * 180.24693 * 18 17 16 39 39 H 1.08006 * 119.85476 * 179.97438 * 19 18 17 40 40 H 1.07998 * 119.92893 * 180.02562 * 20 19 18 41 41 H 1.09001 * 109.47359 * 222.55181 * 22 21 20 42 42 H 1.09000 * 109.46992 * 342.55799 * 22 21 20 43 43 H 1.08997 * 109.50746 * 297.54844 * 24 23 22 44 44 H 1.09007 * 109.50368 * 57.67221 * 24 23 22 45 45 H 1.08999 * 109.51190 * 296.91846 * 25 24 23 46 46 H 1.09004 * 109.54386 * 176.80631 * 25 24 23 47 47 H 1.09004 * 109.50615 * 298.72948 * 27 26 25 48 48 H 1.09000 * 109.54153 * 178.62481 * 27 26 25 49 49 H 1.08997 * 109.50639 * 302.32365 * 28 23 22 50 50 H 1.09002 * 109.50817 * 62.45827 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3052 0.0000 4 7 2.9938 1.3319 1.1315 5 6 2.6065 1.9878 2.3828 6 6 3.0154 3.4377 2.3375 7 1 3.5143 3.8309 1.4640 8 6 2.7535 4.2616 3.4115 9 7 2.1465 3.7826 4.4752 10 14 3.2610 6.0585 3.3555 11 1 2.1553 6.8676 2.7830 12 1 3.5596 6.5316 4.7312 13 1 4.4718 6.2048 2.5082 14 6 4.2059 0.7530 1.0211 15 8 4.9360 0.6823 1.9903 16 6 4.6474 0.2041 -0.2787 17 6 4.6433 1.0106 -1.4181 18 6 5.0559 0.4922 -2.6278 19 6 5.4738 -0.8242 -2.7134 20 6 5.4813 -1.6286 -1.5880 21 6 5.0707 -1.1224 -0.3719 22 6 5.0789 -2.0003 0.8530 23 7 6.2450 -1.6709 1.6836 24 6 7.4958 -2.0454 1.0080 25 6 8.6842 -1.6313 1.8798 26 8 8.5604 -2.2421 3.1670 27 6 7.3537 -1.8986 3.8536 28 6 6.1518 -2.3154 3.0017 29 1 -0.5400 -0.9352 -0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9352 -0.0004 32 1 1.3586 2.1317 0.0896 33 1 2.6213 1.4027 -0.9314 34 1 1.5261 1.9189 2.5100 35 1 3.1028 1.4963 3.2195 36 1 1.9627 4.3622 5.2310 37 1 4.3170 2.0382 -1.3527 38 1 5.0570 1.1163 -3.5093 39 1 5.7955 -1.2255 -3.6632 40 1 5.8089 -2.6550 -1.6615 41 1 4.1665 -1.8338 1.4256 42 1 5.1323 -3.0460 0.5502 43 1 7.5167 -3.1240 0.8525 44 1 7.5559 -1.5371 0.0456 45 1 8.6939 -0.5470 1.9909 46 1 9.6122 -1.9573 1.4100 47 1 7.3247 -0.8221 4.0221 48 1 7.3186 -2.4180 4.8113 49 1 5.2309 -2.0042 3.4948 50 1 6.1513 -3.3984 2.8782 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359440887.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:31 Heat of formation + Delta-G solvation = -10.150969 kcal Electronic energy + Delta-G solvation = -31693.161632 eV Core-core repulsion = 27686.612062 eV Total energy + Delta-G solvation = -4006.549570 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -40.23741 -39.14831 -37.87723 -35.84525 -35.37575 -33.19173 -32.08207 -31.73118 -31.10572 -30.92488 -27.92405 -27.38878 -25.51872 -24.51447 -23.97220 -23.53886 -22.32905 -21.10827 -20.26700 -19.90070 -18.64777 -16.77608 -16.57025 -16.44542 -16.11134 -15.77760 -15.61619 -15.43374 -14.93086 -14.86290 -14.69299 -14.36624 -14.25161 -13.98178 -13.82152 -13.57739 -13.02325 -12.80622 -12.65862 -12.46855 -12.24353 -12.06601 -11.92227 -11.62800 -11.51011 -11.28341 -11.27511 -11.10640 -11.02909 -10.88198 -10.83768 -10.57800 -10.45135 -10.17947 -9.60687 -9.58326 -9.19541 -8.90600 -8.76315 -8.59352 -8.41222 -8.08646 -7.58157 -6.02958 -4.07771 1.22526 1.36534 2.48803 3.30228 3.37023 3.39312 3.44172 3.75408 3.94989 4.05983 4.18094 4.46024 4.72460 4.83264 5.00068 5.02041 5.06194 5.09899 5.16704 5.25492 5.27640 5.29702 5.31378 5.39876 5.45075 5.52821 5.59071 5.66691 5.68749 5.75774 5.78528 5.88402 5.93658 5.96641 6.04121 6.05068 6.11524 6.22379 6.40047 6.47520 6.59139 6.82447 6.93023 6.96400 7.10170 7.12088 7.16395 7.25750 7.48585 7.60902 7.94407 8.25368 8.47127 8.92424 9.17352 9.57673 11.04781 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008511 B = 0.004440 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3289.036989 B = 6304.312757 C = 7926.987902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.161 4.161 3 C 0.129 3.871 4 N -0.593 5.593 5 C 0.250 3.750 6 C -0.526 4.526 7 H 0.056 0.944 8 C 0.062 3.938 9 N -0.894 5.894 10 Si 0.896 3.104 11 H -0.281 1.281 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.543 3.457 15 O -0.497 6.497 16 C -0.082 4.082 17 C -0.095 4.095 18 C -0.123 4.123 19 C -0.114 4.114 20 C -0.121 4.121 21 C -0.047 4.047 22 C 0.100 3.900 23 N -0.503 5.503 24 C 0.020 3.980 25 C 0.065 3.935 26 O -0.391 6.391 27 C 0.065 3.935 28 C 0.028 3.972 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.030 0.970 35 H 0.044 0.956 36 H 0.263 0.737 37 H 0.130 0.870 38 H 0.123 0.877 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.083 0.917 42 H 0.038 0.962 43 H 0.034 0.966 44 H 0.084 0.916 45 H 0.062 0.938 46 H 0.092 0.908 47 H 0.068 0.932 48 H 0.094 0.906 49 H 0.088 0.912 50 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.820 -13.203 -12.846 19.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.180 4.180 3 C 0.005 3.995 4 N -0.325 5.325 5 C 0.131 3.869 6 C -0.564 4.564 7 H 0.075 0.925 8 C -0.140 4.140 9 N -0.533 5.533 10 Si 0.723 3.277 11 H -0.207 1.207 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.328 3.672 15 O -0.371 6.371 16 C -0.086 4.086 17 C -0.113 4.113 18 C -0.141 4.141 19 C -0.132 4.132 20 C -0.140 4.140 21 C -0.048 4.048 22 C -0.028 4.028 23 N -0.227 5.227 24 C -0.109 4.109 25 C -0.012 4.012 26 O -0.310 6.310 27 C -0.012 4.012 28 C -0.100 4.100 29 H 0.111 0.889 30 H 0.117 0.883 31 H 0.119 0.881 32 H 0.104 0.896 33 H 0.097 0.903 34 H 0.048 0.952 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.148 0.852 38 H 0.141 0.859 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.102 0.898 42 H 0.056 0.944 43 H 0.052 0.948 44 H 0.102 0.898 45 H 0.080 0.920 46 H 0.110 0.890 47 H 0.086 0.914 48 H 0.112 0.888 49 H 0.107 0.893 50 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 5.300 -12.781 -11.912 18.258 hybrid contribution -0.181 0.374 -0.390 0.570 sum 5.119 -12.407 -12.302 18.207 Atomic orbital electron populations 1.23779 0.95810 1.01620 1.01353 1.23420 0.96274 0.99088 0.99216 1.20747 0.93072 0.95108 0.90549 1.48163 1.13680 1.54808 1.15805 1.19245 0.95675 0.91745 0.80236 1.21443 1.38565 0.94380 1.02056 0.92539 1.24910 0.95117 0.98774 0.95160 1.69932 1.41726 1.35943 1.05689 0.86538 0.78887 0.84865 0.77381 1.20680 1.21115 1.19911 1.18138 0.82396 0.79142 0.87540 1.90828 1.52949 1.55625 1.37735 1.20152 0.99990 0.93903 0.94510 1.21331 0.98364 0.99966 0.91687 1.21055 0.99863 0.95641 0.97526 1.21131 0.99804 0.94139 0.98142 1.20924 1.01013 0.99762 0.92257 1.19668 0.97524 0.93354 0.94261 1.20952 0.94902 0.94911 0.91985 1.62081 1.00517 1.58054 1.02086 1.22785 0.90981 0.98335 0.98759 1.22609 0.96953 0.98279 0.83316 1.87915 1.40574 1.71671 1.30838 1.22652 0.82814 1.01344 0.94372 1.22684 1.00571 0.95894 0.90873 0.88937 0.88345 0.88142 0.89554 0.90336 0.95198 0.93770 0.92769 0.85227 0.85869 0.86166 0.86277 0.89839 0.94429 0.94818 0.89815 0.91964 0.89032 0.91409 0.88792 0.89343 0.94939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.49 14.32 29.02 0.42 -2.08 16 2 C -0.16 -2.38 9.77 -36.02 -0.35 -2.73 16 3 C 0.13 2.16 5.61 -5.19 -0.03 2.13 16 4 N -0.59 -12.42 2.46 -177.54 -0.44 -12.85 16 5 C 0.25 6.45 5.18 -5.19 -0.03 6.42 16 6 C -0.53 -14.68 9.39 -34.44 -0.32 -15.00 16 7 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 8 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 9 N -0.89 -26.37 13.29 55.43 0.74 -25.64 16 10 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 14 C 0.54 11.22 6.16 -12.33 -0.08 11.14 16 15 O -0.50 -12.02 14.67 5.32 0.08 -11.94 16 16 C -0.08 -1.34 4.96 -104.97 -0.52 -1.86 16 17 C -0.10 -1.36 7.62 -39.19 -0.30 -1.65 16 18 C -0.12 -1.39 10.03 -39.64 -0.40 -1.79 16 19 C -0.11 -1.19 10.04 -39.49 -0.40 -1.58 16 20 C -0.12 -1.38 8.87 -39.64 -0.35 -1.73 16 21 C -0.05 -0.66 4.58 -104.23 -0.48 -1.14 16 22 C 0.10 1.42 4.28 -4.98 -0.02 1.40 16 23 N -0.50 -7.68 3.29 -235.75 -0.77 -8.46 16 24 C 0.02 0.26 5.43 -3.71 -0.02 0.24 16 25 C 0.07 0.86 7.01 37.21 0.26 1.12 16 26 O -0.39 -5.72 10.83 -35.23 -0.38 -6.10 16 27 C 0.07 0.92 7.01 37.21 0.26 1.18 16 28 C 0.03 0.40 5.64 -3.71 -0.02 0.38 16 29 H 0.09 1.06 8.06 -52.49 -0.42 0.64 16 30 H 0.10 1.28 7.84 -52.48 -0.41 0.87 16 31 H 0.10 1.46 8.06 -52.49 -0.42 1.03 16 32 H 0.09 1.49 7.68 -51.93 -0.40 1.09 16 33 H 0.08 1.17 4.52 -51.93 -0.23 0.93 16 34 H 0.03 0.79 8.07 -51.93 -0.42 0.38 16 35 H 0.04 1.29 7.35 -51.93 -0.38 0.90 16 36 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.13 1.86 7.31 -52.48 -0.38 1.48 16 38 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 39 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 40 H 0.12 1.11 8.02 -52.49 -0.42 0.69 16 41 H 0.08 1.33 7.46 -51.93 -0.39 0.94 16 42 H 0.04 0.46 7.94 -51.93 -0.41 0.04 16 43 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.08 1.08 6.68 -51.92 -0.35 0.73 16 45 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 48 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 49 H 0.09 1.35 8.08 -51.93 -0.42 0.93 16 50 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 404.89 15.07 6.10 6.10 Total: -1.00 -32.49 404.89 -10.16 -42.65 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -7.99 Total: 3.39 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: -2.47 Total: -3.89 kcal Atomic # 7 Polarization: -46.47 SS G_CDS: -0.47 Total: -46.95 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -0.30 Total: -18.04 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.49 -10.16 -42.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359440887.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.502 kcal (2) G-P(sol) polarization free energy of solvation -32.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds