Wall clock time and date at job start Wed Apr 1 2020 03:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50712 * 120.00104 * 2 1 4 4 N 1.46503 * 109.46647 * 124.99898 * 3 2 1 5 5 C 1.46496 * 120.00050 * 263.74436 * 4 3 2 6 6 C 1.50706 * 109.47354 * 270.00835 * 5 4 3 7 7 H 1.08004 * 119.99475 * 359.97438 * 6 5 4 8 8 C 1.37870 * 119.99887 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00380 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99693 * 179.97438 * 8 6 5 11 11 H 1.48493 * 109.47287 * 90.00045 * 10 8 6 12 12 H 1.48502 * 109.46932 * 209.99897 * 10 8 6 13 13 H 1.48502 * 109.47150 * 329.99502 * 10 8 6 14 14 C 1.34774 * 119.99793 * 83.75125 * 4 3 2 15 15 O 1.21549 * 119.99713 * 185.78344 * 14 4 3 16 16 C 1.47849 * 120.00219 * 5.78155 * 14 4 3 17 17 C 1.39598 * 120.14366 * 54.48521 * 16 14 4 18 18 C 1.37927 * 119.85431 * 180.02562 * 17 16 14 19 19 C 1.38383 * 120.14270 * 359.97438 * 18 17 16 20 20 C 1.38332 * 120.29525 * 359.97438 * 19 18 17 21 21 C 1.37976 * 120.14383 * 0.04164 * 20 19 18 22 22 C 1.50700 * 120.07443 * 179.97438 * 21 20 19 23 23 N 1.46900 * 109.47128 * 102.55629 * 22 21 20 24 24 C 1.47013 * 111.00226 * 292.72316 * 23 22 21 25 25 C 1.53092 * 109.26109 * 177.60556 * 24 23 22 26 26 O 1.43018 * 109.25901 * 56.85190 * 25 24 23 27 27 C 1.43019 * 113.73615 * 301.33278 * 26 25 24 28 28 C 1.47016 * 110.99996 * 169.09030 * 23 22 21 29 29 H 1.07993 * 120.00232 * 179.97438 * 1 2 3 30 30 H 1.08004 * 119.99994 * 0.02562 * 1 2 3 31 31 H 1.07997 * 120.00346 * 180.02562 * 2 1 3 32 32 H 1.09001 * 109.46536 * 5.00244 * 3 2 1 33 33 H 1.08994 * 109.46958 * 245.00343 * 3 2 1 34 34 H 1.09006 * 109.47317 * 30.00454 * 5 4 3 35 35 H 1.08994 * 109.47567 * 150.00209 * 5 4 3 36 36 H 0.97004 * 120.00236 * 179.97438 * 9 8 6 37 37 H 1.08008 * 120.07322 * 359.97438 * 17 16 14 38 38 H 1.08002 * 119.92903 * 180.24693 * 18 17 16 39 39 H 1.08006 * 119.85476 * 179.97438 * 19 18 17 40 40 H 1.07998 * 119.92893 * 180.02562 * 20 19 18 41 41 H 1.09001 * 109.47359 * 222.55181 * 22 21 20 42 42 H 1.09000 * 109.46992 * 342.55799 * 22 21 20 43 43 H 1.08997 * 109.50746 * 297.54844 * 24 23 22 44 44 H 1.09007 * 109.50368 * 57.67221 * 24 23 22 45 45 H 1.08999 * 109.51190 * 296.91846 * 25 24 23 46 46 H 1.09004 * 109.54386 * 176.80631 * 25 24 23 47 47 H 1.09004 * 109.50615 * 298.72948 * 27 26 25 48 48 H 1.09000 * 109.54153 * 178.62481 * 27 26 25 49 49 H 1.08997 * 109.50639 * 302.32365 * 28 23 22 50 50 H 1.09002 * 109.50817 * 62.45827 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3052 0.0000 4 7 2.9938 1.3319 1.1315 5 6 2.6065 1.9878 2.3828 6 6 3.0154 3.4377 2.3375 7 1 3.5143 3.8309 1.4640 8 6 2.7535 4.2616 3.4115 9 7 2.1465 3.7826 4.4752 10 14 3.2610 6.0585 3.3555 11 1 2.1553 6.8676 2.7830 12 1 3.5596 6.5316 4.7312 13 1 4.4718 6.2048 2.5082 14 6 4.2059 0.7530 1.0211 15 8 4.9360 0.6823 1.9903 16 6 4.6474 0.2041 -0.2787 17 6 4.6433 1.0106 -1.4181 18 6 5.0559 0.4922 -2.6278 19 6 5.4738 -0.8242 -2.7134 20 6 5.4813 -1.6286 -1.5880 21 6 5.0707 -1.1224 -0.3719 22 6 5.0789 -2.0003 0.8530 23 7 6.2450 -1.6709 1.6836 24 6 7.4958 -2.0454 1.0080 25 6 8.6842 -1.6313 1.8798 26 8 8.5604 -2.2421 3.1670 27 6 7.3537 -1.8986 3.8536 28 6 6.1518 -2.3154 3.0017 29 1 -0.5400 -0.9352 -0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9352 -0.0004 32 1 1.3586 2.1317 0.0896 33 1 2.6213 1.4027 -0.9314 34 1 1.5261 1.9189 2.5100 35 1 3.1028 1.4963 3.2195 36 1 1.9627 4.3622 5.2310 37 1 4.3170 2.0382 -1.3527 38 1 5.0570 1.1163 -3.5093 39 1 5.7955 -1.2255 -3.6632 40 1 5.8089 -2.6550 -1.6615 41 1 4.1665 -1.8338 1.4256 42 1 5.1323 -3.0460 0.5502 43 1 7.5167 -3.1240 0.8525 44 1 7.5559 -1.5371 0.0456 45 1 8.6939 -0.5470 1.9909 46 1 9.6122 -1.9573 1.4100 47 1 7.3247 -0.8221 4.0221 48 1 7.3186 -2.4180 4.8113 49 1 5.2309 -2.0042 3.4948 50 1 6.1513 -3.3984 2.8782 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359440887.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:30 Heat of formation + Delta-G solvation = -29.805687 kcal Electronic energy + Delta-G solvation = -31694.013924 eV Core-core repulsion = 27686.612062 eV Total energy + Delta-G solvation = -4007.401862 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.47235 -40.35397 -39.18070 -37.19917 -36.67912 -35.13396 -33.65973 -32.78418 -32.27806 -32.03067 -29.49132 -28.81001 -26.95107 -25.85080 -25.16876 -24.93548 -23.69366 -22.26574 -21.42759 -21.12099 -20.00749 -18.62280 -18.10837 -17.65566 -17.31025 -17.19336 -16.83486 -16.67946 -16.30495 -16.03591 -15.98516 -15.87623 -15.38817 -15.24435 -14.96893 -14.84708 -14.41564 -14.11698 -14.04301 -13.89889 -13.52755 -13.36986 -13.19487 -13.10132 -12.96131 -12.84610 -12.58443 -12.55456 -12.38182 -12.25336 -12.20916 -12.14787 -11.89238 -11.67200 -11.56507 -10.73201 -10.64570 -10.46674 -10.36370 -9.77273 -9.70618 -9.33445 -9.14988 -8.21576 -6.36729 0.17644 0.40177 1.30831 1.35178 1.38088 1.48298 2.02180 2.35089 2.51765 2.68669 2.87291 3.07437 3.10726 3.63037 3.77695 3.86920 3.94697 4.02340 4.06817 4.14683 4.15550 4.19876 4.23549 4.28815 4.36204 4.45785 4.51219 4.60721 4.61171 4.65877 4.68667 4.77282 4.80462 4.85466 4.89081 4.98971 5.01622 5.05563 5.09529 5.25211 5.47252 5.54095 5.55402 5.57743 5.67403 5.77617 5.96709 5.97677 6.03979 6.08005 6.09069 6.16719 6.71305 6.83601 7.29699 7.57490 8.85024 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008511 B = 0.004440 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3289.036989 B = 6304.312757 C = 7926.987902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.178 4.178 3 C 0.130 3.870 4 N -0.599 5.599 5 C 0.270 3.730 6 C -0.541 4.541 7 H 0.052 0.948 8 C 0.010 3.990 9 N -0.927 5.927 10 Si 0.965 3.035 11 H -0.262 1.262 12 H -0.281 1.281 13 H -0.273 1.273 14 C 0.539 3.461 15 O -0.547 6.547 16 C -0.107 4.107 17 C -0.109 4.109 18 C -0.114 4.114 19 C -0.097 4.097 20 C -0.113 4.113 21 C -0.054 4.054 22 C 0.104 3.896 23 N -0.533 5.533 24 C 0.026 3.974 25 C 0.062 3.938 26 O -0.397 6.397 27 C 0.068 3.932 28 C 0.032 3.968 29 H 0.117 0.883 30 H 0.100 0.900 31 H 0.103 0.897 32 H 0.075 0.925 33 H 0.100 0.900 34 H 0.015 0.985 35 H -0.002 1.002 36 H 0.266 0.734 37 H 0.119 0.881 38 H 0.154 0.846 39 H 0.162 0.838 40 H 0.150 0.850 41 H 0.052 0.948 42 H 0.064 0.936 43 H 0.052 0.948 44 H 0.088 0.912 45 H 0.038 0.962 46 H 0.124 0.876 47 H 0.035 0.965 48 H 0.116 0.884 49 H 0.064 0.936 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.628 -14.397 -16.536 22.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.197 4.197 3 C 0.008 3.992 4 N -0.330 5.330 5 C 0.149 3.851 6 C -0.579 4.579 7 H 0.070 0.930 8 C -0.189 4.189 9 N -0.567 5.567 10 Si 0.789 3.211 11 H -0.187 1.187 12 H -0.207 1.207 13 H -0.198 1.198 14 C 0.327 3.673 15 O -0.425 6.425 16 C -0.111 4.111 17 C -0.127 4.127 18 C -0.132 4.132 19 C -0.115 4.115 20 C -0.131 4.131 21 C -0.056 4.056 22 C -0.023 4.023 23 N -0.258 5.258 24 C -0.102 4.102 25 C -0.015 4.015 26 O -0.315 6.315 27 C -0.009 4.009 28 C -0.096 4.096 29 H 0.135 0.865 30 H 0.118 0.882 31 H 0.121 0.879 32 H 0.094 0.906 33 H 0.117 0.883 34 H 0.033 0.967 35 H 0.016 0.984 36 H 0.075 0.925 37 H 0.137 0.863 38 H 0.172 0.828 39 H 0.179 0.821 40 H 0.167 0.833 41 H 0.070 0.930 42 H 0.082 0.918 43 H 0.070 0.930 44 H 0.106 0.894 45 H 0.056 0.944 46 H 0.142 0.858 47 H 0.054 0.946 48 H 0.134 0.866 49 H 0.083 0.917 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.083 -13.985 -15.653 21.854 hybrid contribution -0.451 0.698 0.706 1.090 sum 5.633 -13.287 -14.947 20.777 Atomic orbital electron populations 1.24018 0.95264 1.02901 0.98578 1.23255 0.96757 0.98037 1.01693 1.20897 0.92530 0.96070 0.89746 1.48117 1.15004 1.54609 1.15282 1.18624 0.93906 0.91069 0.81501 1.21691 1.38651 0.95428 1.02142 0.92983 1.25817 0.94896 1.03541 0.94626 1.70057 1.42576 1.37712 1.06362 0.85456 0.78856 0.79246 0.77504 1.18739 1.20661 1.19833 1.18895 0.81423 0.78002 0.88954 1.90785 1.54171 1.57486 1.40052 1.19792 1.03177 0.95524 0.92588 1.21331 0.99607 0.99427 0.92372 1.21388 0.98220 0.96603 0.96977 1.21617 0.97249 0.93247 0.99341 1.21239 0.99586 1.01246 0.91050 1.19737 0.98035 0.92368 0.95417 1.20881 0.93335 0.96391 0.91707 1.62011 1.01795 1.59299 1.02661 1.22768 0.89609 0.99334 0.98462 1.22772 0.98696 0.96972 0.83044 1.87901 1.40444 1.71611 1.31592 1.22620 0.83051 0.99659 0.95521 1.22583 0.99416 0.96769 0.90796 0.86474 0.88158 0.87877 0.90606 0.88269 0.96684 0.98429 0.92464 0.86347 0.82797 0.82054 0.83279 0.92990 0.91800 0.92981 0.89379 0.94399 0.85814 0.94628 0.86585 0.91713 0.93029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.36 14.32 67.78 0.97 -3.39 16 2 C -0.18 -5.32 9.77 25.65 0.25 -5.07 16 3 C 0.13 4.52 5.61 85.64 0.48 5.00 16 4 N -0.60 -26.88 2.46 -833.90 -2.05 -28.93 16 5 C 0.27 15.07 5.18 85.64 0.44 15.51 16 6 C -0.54 -31.77 9.39 25.60 0.24 -31.53 16 7 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 8 C 0.01 0.60 5.46 84.65 0.46 1.06 16 9 N -0.93 -56.95 13.29 21.44 0.28 -56.66 16 10 Si 0.97 45.61 29.54 68.60 2.03 47.64 16 11 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 12 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 13 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 14 C 0.54 23.85 6.16 86.79 0.53 24.39 16 15 O -0.55 -28.87 14.67 -3.87 -0.06 -28.92 16 16 C -0.11 -3.56 4.96 -20.09 -0.10 -3.66 16 17 C -0.11 -3.00 7.62 22.52 0.17 -2.83 16 18 C -0.11 -2.16 10.03 22.23 0.22 -1.94 16 19 C -0.10 -1.52 10.04 22.33 0.22 -1.30 16 20 C -0.11 -2.13 8.87 22.23 0.20 -1.93 16 21 C -0.05 -1.48 4.58 -19.61 -0.09 -1.57 16 22 C 0.10 2.97 4.28 85.56 0.37 3.34 16 23 N -0.53 -16.67 3.29 -899.78 -2.96 -19.63 16 24 C 0.03 0.65 5.43 86.31 0.47 1.11 16 25 C 0.06 1.59 7.01 72.01 0.50 2.09 16 26 O -0.40 -11.52 10.83 -148.98 -1.61 -13.13 16 27 C 0.07 2.03 7.01 72.01 0.50 2.54 16 28 C 0.03 0.97 5.64 86.31 0.49 1.46 16 29 H 0.12 2.44 8.06 -2.91 -0.02 2.42 16 30 H 0.10 2.54 7.84 -2.91 -0.02 2.51 16 31 H 0.10 3.02 8.06 -2.91 -0.02 3.00 16 32 H 0.08 2.73 7.68 -2.39 -0.02 2.72 16 33 H 0.10 3.00 4.52 -2.39 -0.01 2.98 16 34 H 0.02 0.87 8.07 -2.38 -0.02 0.85 16 35 H 0.00 -0.15 7.35 -2.39 -0.02 -0.17 16 36 H 0.27 15.34 8.31 -92.70 -0.77 14.56 16 37 H 0.12 3.44 7.31 -2.91 -0.02 3.42 16 38 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 39 H 0.16 1.33 8.06 -2.91 -0.02 1.31 16 40 H 0.15 1.95 8.02 -2.91 -0.02 1.93 16 41 H 0.05 1.78 7.46 -2.39 -0.02 1.76 16 42 H 0.06 1.43 7.94 -2.39 -0.02 1.42 16 43 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.09 2.09 6.68 -2.38 -0.02 2.07 16 45 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.12 2.33 8.14 -2.38 -0.02 2.31 16 47 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 48 H 0.12 2.83 8.14 -2.39 -0.02 2.81 16 49 H 0.06 2.20 8.08 -2.39 -0.02 2.18 16 50 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -76.74 404.89 2.89 -73.86 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: 0.91 Total: 22.50 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: 6.34 Total: 3.28 kcal Atomic # 7 Polarization: -100.50 SS G_CDS: -4.72 Total: -105.22 kcal Atomic # 8 Polarization: -40.38 SS G_CDS: -1.67 Total: -42.05 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -76.74 2.89 -73.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359440887.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.051 kcal (2) G-P(sol) polarization free energy of solvation -76.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds