Wall clock time and date at job start Wed Apr 1 2020 03:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47156 * 2 1 4 4 H 1.09000 * 109.46811 * 306.40571 * 3 2 1 5 5 C 1.50703 * 109.47090 * 186.41229 * 3 2 1 6 6 H 1.07998 * 120.00034 * 244.07128 * 5 3 2 7 7 C 1.37876 * 119.99780 * 64.07222 * 5 3 2 8 8 N 1.31514 * 120.00443 * 9.17446 * 7 5 3 9 9 Si 1.86802 * 119.99809 * 189.17272 * 7 5 3 10 10 H 1.48493 * 109.47482 * 94.99122 * 9 7 5 11 11 H 1.48499 * 109.47269 * 214.99514 * 9 7 5 12 12 H 1.48508 * 109.47045 * 334.99029 * 9 7 5 13 13 N 1.46494 * 109.47217 * 66.40878 * 3 2 1 14 14 C 1.34776 * 120.00235 * 274.99772 * 13 3 2 15 15 O 1.21279 * 120.00109 * 0.02562 * 14 13 3 16 16 C 1.50703 * 120.00103 * 179.97438 * 14 13 3 17 17 H 1.09006 * 109.58436 * 359.91706 * 16 14 13 18 18 C 1.53187 * 109.70485 * 239.55628 * 16 14 13 19 19 C 1.53049 * 109.30925 * 185.50800 * 18 16 14 20 20 C 1.53356 * 109.60623 * 61.37589 * 19 18 16 21 21 C 1.53188 * 109.14649 * 298.71203 * 20 19 18 22 22 N 1.46922 * 108.89913 * 54.57730 * 21 20 19 23 23 C 1.34781 * 120.63167 * 126.33606 * 22 21 20 24 24 O 1.21551 * 119.99822 * 189.25096 * 23 22 21 25 25 C 1.47842 * 119.99978 * 9.26265 * 23 22 21 26 26 C 1.39577 * 120.14354 * 16.16814 * 25 23 22 27 27 C 1.37963 * 119.85093 * 179.79301 * 26 25 23 28 28 C 1.38357 * 120.14295 * 0.49076 * 27 26 25 29 29 C 1.38360 * 120.29278 * 359.74320 * 28 27 26 30 30 C 1.37950 * 120.14512 * 0.02562 * 29 28 27 31 31 H 1.08998 * 109.47575 * 60.00279 * 1 2 3 32 32 H 1.09002 * 109.47137 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47361 * 300.00152 * 1 2 3 34 34 H 1.08996 * 109.47413 * 239.99562 * 2 1 3 35 35 H 1.09003 * 109.46886 * 119.99734 * 2 1 3 36 36 H 0.97002 * 119.99700 * 180.02562 * 8 7 5 37 37 H 0.97006 * 119.99868 * 95.00145 * 13 3 2 38 38 H 1.08994 * 109.50195 * 305.45876 * 18 16 14 39 39 H 1.08996 * 109.50087 * 65.53018 * 18 16 14 40 40 H 1.09002 * 109.45548 * 181.37984 * 19 18 16 41 41 H 1.08993 * 109.46341 * 301.36088 * 19 18 16 42 42 H 1.08994 * 109.68656 * 178.74644 * 20 19 18 43 43 H 1.09003 * 109.47572 * 58.54639 * 20 19 18 44 44 H 1.09004 * 109.58674 * 294.71280 * 21 20 19 45 45 H 1.09007 * 109.58490 * 174.44155 * 21 20 19 46 46 H 1.07997 * 120.07416 * 0.02562 * 26 25 23 47 47 H 1.07999 * 119.92998 * 180.22952 * 27 26 25 48 48 H 1.07999 * 119.85394 * 179.76370 * 28 27 26 49 49 H 1.08009 * 119.92625 * 180.02562 * 29 28 27 50 50 H 1.08008 * 120.07408 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5860 1.9883 -0.8271 5 6 3.5386 1.4454 -0.1587 6 1 4.1650 1.8239 0.6356 7 6 4.1100 0.9650 -1.3179 8 7 3.3525 0.6734 -2.3526 9 14 5.9602 0.7285 -1.4187 10 1 6.2981 -0.6793 -1.0886 11 1 6.4248 1.0396 -2.7944 12 1 6.6288 1.6375 -0.4531 13 7 1.6816 2.0872 1.2657 14 6 0.4674 2.6531 1.4137 15 8 -0.3288 2.6282 0.4992 16 6 0.0986 3.3157 2.7160 17 1 0.9319 3.2379 3.4144 18 6 -1.1363 2.6325 3.3116 19 6 -1.5849 3.3965 4.5596 20 6 -1.9651 4.8317 4.1754 21 6 -0.7381 5.5365 3.5885 22 7 -0.2132 4.7315 2.4772 23 6 -0.0211 5.2815 1.2617 24 8 0.2514 4.5747 0.3111 25 6 -0.1415 6.7443 1.0849 26 6 -0.1166 7.5890 2.1957 27 6 -0.2252 8.9536 2.0234 28 6 -0.3687 9.4842 0.7537 29 6 -0.3990 8.6520 -0.3512 30 6 -0.2867 7.2862 -0.1931 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 3.7546 0.3350 -3.1680 37 1 2.3183 2.1068 1.9973 38 1 -1.9414 2.6313 2.5769 39 1 -0.8892 1.6060 3.5823 40 1 -2.4489 2.8982 4.9994 41 1 -0.7708 3.4189 5.2839 42 1 -2.3059 5.3704 5.0595 43 1 -2.7623 4.8099 3.4323 44 1 0.0268 5.6398 4.3581 45 1 -1.0236 6.5228 3.2225 46 1 -0.0088 7.1757 3.1876 47 1 -0.2023 9.6086 2.8817 48 1 -0.4571 10.5528 0.6245 49 1 -0.5109 9.0727 -1.3397 50 1 -0.3101 6.6377 -1.0565 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000364905078.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:57 Heat of formation + Delta-G solvation = 0.633267 kcal Electronic energy + Delta-G solvation = -31826.553346 eV Core-core repulsion = 27820.471416 eV Total energy + Delta-G solvation = -4006.081930 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.96309 -39.11368 -37.66013 -37.15515 -34.75168 -33.29677 -32.24799 -31.86869 -31.05748 -30.77490 -30.25733 -26.99932 -25.95967 -24.15949 -23.47943 -22.85092 -22.43090 -20.93424 -20.54513 -19.32418 -19.04802 -17.59881 -16.79385 -16.51757 -16.04218 -15.54120 -15.20822 -15.02692 -14.91389 -14.68916 -14.46813 -14.02569 -13.91561 -13.74584 -13.63286 -13.34346 -13.17173 -12.81643 -12.58682 -12.42939 -12.35514 -11.90488 -11.59053 -11.48140 -11.33605 -11.28012 -11.20145 -11.05733 -10.90889 -10.89129 -10.69928 -10.35067 -10.21076 -10.04281 -9.58971 -9.17185 -9.05393 -8.96870 -8.82778 -8.60141 -8.42407 -8.31623 -7.46884 -6.01226 -4.05398 0.84574 1.23158 2.83477 3.00665 3.31382 3.38272 3.40545 3.77361 3.99714 4.15072 4.44738 4.58677 4.61728 4.64481 4.77802 4.83171 4.87057 4.97471 5.09377 5.16013 5.23744 5.31260 5.34069 5.35079 5.40812 5.60270 5.65579 5.68772 5.78683 5.81068 5.86478 5.95216 5.99139 6.20164 6.27717 6.31019 6.33887 6.46572 6.52482 6.59444 6.74063 6.78780 7.11429 7.33754 7.48874 7.51700 7.66321 7.78180 7.89342 8.07027 8.26078 8.48355 8.92370 8.98398 9.47433 9.63196 11.06875 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010668 B = 0.003828 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2624.094433 B = 7312.485285 C = 8940.660249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.120 4.120 3 C 0.275 3.725 4 H 0.057 0.943 5 C -0.531 4.531 6 H 0.058 0.942 7 C 0.068 3.932 8 N -0.880 5.880 9 Si 0.894 3.106 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.710 5.710 14 C 0.515 3.485 15 O -0.512 6.512 16 C 0.127 3.873 17 H 0.079 0.921 18 C -0.121 4.121 19 C -0.117 4.117 20 C -0.137 4.137 21 C 0.066 3.934 22 N -0.601 5.601 23 C 0.536 3.464 24 O -0.464 6.464 25 C -0.119 4.119 26 C -0.129 4.129 27 C -0.131 4.131 28 C -0.104 4.104 29 C -0.126 4.126 30 C -0.061 4.061 31 H 0.050 0.950 32 H 0.020 0.980 33 H 0.041 0.959 34 H 0.079 0.921 35 H 0.030 0.970 36 H 0.262 0.738 37 H 0.381 0.619 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.126 0.874 46 H 0.162 0.838 47 H 0.126 0.874 48 H 0.123 0.877 49 H 0.128 0.872 50 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.052 14.646 15.480 23.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.159 4.159 3 C 0.174 3.826 4 H 0.075 0.925 5 C -0.570 4.570 6 H 0.076 0.924 7 C -0.135 4.135 8 N -0.517 5.517 9 Si 0.722 3.278 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.359 5.359 14 C 0.298 3.702 15 O -0.387 6.387 16 C 0.020 3.980 17 H 0.097 0.903 18 C -0.160 4.160 19 C -0.155 4.155 20 C -0.175 4.175 21 C -0.055 4.055 22 N -0.338 5.338 23 C 0.324 3.676 24 O -0.335 6.335 25 C -0.122 4.122 26 C -0.146 4.146 27 C -0.149 4.149 28 C -0.122 4.122 29 C -0.145 4.145 30 C -0.080 4.080 31 H 0.069 0.931 32 H 0.039 0.961 33 H 0.060 0.940 34 H 0.097 0.903 35 H 0.049 0.951 36 H 0.072 0.928 37 H 0.212 0.788 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.143 0.857 46 H 0.179 0.821 47 H 0.144 0.856 48 H 0.141 0.859 49 H 0.146 0.854 50 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -10.455 14.139 14.015 22.487 hybrid contribution 1.386 -0.119 0.379 1.442 sum -9.069 14.020 14.394 22.045 Atomic orbital electron populations 1.21822 0.98138 0.97746 1.01557 1.21851 0.92933 1.00204 1.00891 1.18673 0.94232 0.88617 0.81124 0.92517 1.21226 0.91012 1.42597 1.02146 0.92390 1.24867 0.98072 0.95455 0.95126 1.70005 1.35163 1.43673 1.02846 0.86557 0.85509 0.78377 0.77379 1.20648 1.21221 1.19943 1.46332 1.13932 1.57459 1.18204 1.19516 0.83651 0.79357 0.87645 1.90663 1.50140 1.57569 1.40355 1.21305 0.97925 0.81296 0.97432 0.90264 1.21795 0.97544 0.99002 0.97612 1.21569 1.01277 0.95388 0.97261 1.22021 0.98034 0.96426 1.01014 1.23030 0.95991 0.97079 0.89429 1.47630 1.66454 1.09270 1.10422 1.18500 0.78739 0.87469 0.82924 1.91178 1.43829 1.60010 1.38501 1.20077 1.04365 0.93274 0.94504 1.22427 0.98687 0.93793 0.99695 1.21133 1.01408 0.94888 0.97465 1.21345 0.98176 0.99870 0.92808 1.21175 1.00845 0.93237 0.99194 1.21380 0.94468 0.95279 0.96829 0.93090 0.96129 0.94001 0.90276 0.95070 0.92794 0.78801 0.90300 0.90536 0.91484 0.91740 0.90735 0.91274 0.91159 0.85690 0.82138 0.85619 0.85885 0.85447 0.84551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.54 37.16 0.32 -2.83 16 2 C -0.12 -3.02 5.49 -26.73 -0.15 -3.17 16 3 C 0.28 7.37 2.10 -69.08 -0.15 7.22 16 4 H 0.06 1.82 7.55 -51.93 -0.39 1.43 16 5 C -0.53 -14.85 8.67 -34.44 -0.30 -15.15 16 6 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 7 C 0.07 1.92 5.14 -17.82 -0.09 1.83 16 8 N -0.88 -26.09 12.06 55.43 0.67 -25.42 16 9 Si 0.89 21.51 29.55 -169.99 -5.02 16.49 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 13 N -0.71 -15.82 5.03 -54.93 -0.28 -16.10 16 14 C 0.52 10.86 3.43 -10.98 -0.04 10.82 16 15 O -0.51 -12.79 11.08 -19.97 -0.22 -13.01 16 16 C 0.13 1.97 3.31 -68.75 -0.23 1.74 16 17 H 0.08 1.06 7.92 -51.93 -0.41 0.65 16 18 C -0.12 -1.57 5.33 -26.61 -0.14 -1.71 16 19 C -0.12 -1.07 5.89 -26.52 -0.16 -1.23 16 20 C -0.14 -1.16 6.11 -26.45 -0.16 -1.32 16 21 C 0.07 0.62 4.65 -3.71 -0.02 0.61 16 22 N -0.60 -8.68 2.97 -167.64 -0.50 -9.18 16 23 C 0.54 9.55 7.43 -12.33 -0.09 9.45 16 24 O -0.46 -10.85 11.60 -20.21 -0.23 -11.09 16 25 C -0.12 -1.71 5.72 -104.97 -0.60 -2.31 16 26 C -0.13 -1.34 7.70 -39.18 -0.30 -1.64 16 27 C -0.13 -1.15 10.03 -39.64 -0.40 -1.55 16 28 C -0.10 -0.94 10.04 -39.49 -0.40 -1.34 16 29 C -0.13 -1.38 10.03 -39.64 -0.40 -1.78 16 30 C -0.06 -0.86 9.59 -39.19 -0.38 -1.23 16 31 H 0.05 1.29 7.93 -51.93 -0.41 0.88 16 32 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.04 0.94 5.61 -51.93 -0.29 0.65 16 34 H 0.08 2.19 6.64 -51.93 -0.35 1.85 16 35 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.38 7.47 8.37 -40.82 -0.34 7.13 16 38 H 0.08 1.21 7.97 -51.93 -0.41 0.79 16 39 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.07 0.52 8.01 -51.93 -0.42 0.11 16 45 H 0.13 1.05 3.55 -63.49 -0.23 0.83 16 46 H 0.16 1.30 4.18 -52.49 -0.22 1.08 16 47 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 48 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 49 H 0.13 1.12 8.06 -52.48 -0.42 0.69 16 50 H 0.14 2.14 7.74 -52.48 -0.41 1.74 16 LS Contribution 385.52 15.07 5.81 5.81 Total: -1.00 -35.81 385.52 -11.09 -46.89 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -7.64 Total: 9.19 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: -3.67 Total: -3.58 kcal Atomic # 7 Polarization: -50.59 SS G_CDS: -0.11 Total: -50.70 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -0.46 Total: -24.10 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.81 -11.09 -46.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364905078.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.525 kcal (2) G-P(sol) polarization free energy of solvation -35.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds