Wall clock time and date at job start Wed Apr 1 2020 03:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47156 * 2 1 4 4 H 1.09000 * 109.46811 * 306.40571 * 3 2 1 5 5 C 1.50703 * 109.47090 * 186.41229 * 3 2 1 6 6 H 1.07998 * 120.00034 * 244.07128 * 5 3 2 7 7 C 1.37876 * 119.99780 * 64.07222 * 5 3 2 8 8 N 1.31514 * 120.00443 * 9.17446 * 7 5 3 9 9 Si 1.86802 * 119.99809 * 189.17272 * 7 5 3 10 10 H 1.48493 * 109.47482 * 94.99122 * 9 7 5 11 11 H 1.48499 * 109.47269 * 214.99514 * 9 7 5 12 12 H 1.48508 * 109.47045 * 334.99029 * 9 7 5 13 13 N 1.46494 * 109.47217 * 66.40878 * 3 2 1 14 14 C 1.34776 * 120.00235 * 274.99772 * 13 3 2 15 15 O 1.21279 * 120.00109 * 0.02562 * 14 13 3 16 16 C 1.50703 * 120.00103 * 179.97438 * 14 13 3 17 17 H 1.09006 * 109.58436 * 359.91706 * 16 14 13 18 18 C 1.53187 * 109.70485 * 239.55628 * 16 14 13 19 19 C 1.53049 * 109.30925 * 185.50800 * 18 16 14 20 20 C 1.53356 * 109.60623 * 61.37589 * 19 18 16 21 21 C 1.53188 * 109.14649 * 298.71203 * 20 19 18 22 22 N 1.46922 * 108.89913 * 54.57730 * 21 20 19 23 23 C 1.34781 * 120.63167 * 126.33606 * 22 21 20 24 24 O 1.21551 * 119.99822 * 189.25096 * 23 22 21 25 25 C 1.47842 * 119.99978 * 9.26265 * 23 22 21 26 26 C 1.39577 * 120.14354 * 16.16814 * 25 23 22 27 27 C 1.37963 * 119.85093 * 179.79301 * 26 25 23 28 28 C 1.38357 * 120.14295 * 0.49076 * 27 26 25 29 29 C 1.38360 * 120.29278 * 359.74320 * 28 27 26 30 30 C 1.37950 * 120.14512 * 0.02562 * 29 28 27 31 31 H 1.08998 * 109.47575 * 60.00279 * 1 2 3 32 32 H 1.09002 * 109.47137 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47361 * 300.00152 * 1 2 3 34 34 H 1.08996 * 109.47413 * 239.99562 * 2 1 3 35 35 H 1.09003 * 109.46886 * 119.99734 * 2 1 3 36 36 H 0.97002 * 119.99700 * 180.02562 * 8 7 5 37 37 H 0.97006 * 119.99868 * 95.00145 * 13 3 2 38 38 H 1.08994 * 109.50195 * 305.45876 * 18 16 14 39 39 H 1.08996 * 109.50087 * 65.53018 * 18 16 14 40 40 H 1.09002 * 109.45548 * 181.37984 * 19 18 16 41 41 H 1.08993 * 109.46341 * 301.36088 * 19 18 16 42 42 H 1.08994 * 109.68656 * 178.74644 * 20 19 18 43 43 H 1.09003 * 109.47572 * 58.54639 * 20 19 18 44 44 H 1.09004 * 109.58674 * 294.71280 * 21 20 19 45 45 H 1.09007 * 109.58490 * 174.44155 * 21 20 19 46 46 H 1.07997 * 120.07416 * 0.02562 * 26 25 23 47 47 H 1.07999 * 119.92998 * 180.22952 * 27 26 25 48 48 H 1.07999 * 119.85394 * 179.76370 * 28 27 26 49 49 H 1.08009 * 119.92625 * 180.02562 * 29 28 27 50 50 H 1.08008 * 120.07408 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5860 1.9883 -0.8271 5 6 3.5386 1.4454 -0.1587 6 1 4.1650 1.8239 0.6356 7 6 4.1100 0.9650 -1.3179 8 7 3.3525 0.6734 -2.3526 9 14 5.9602 0.7285 -1.4187 10 1 6.2981 -0.6793 -1.0886 11 1 6.4248 1.0396 -2.7944 12 1 6.6288 1.6375 -0.4531 13 7 1.6816 2.0872 1.2657 14 6 0.4674 2.6531 1.4137 15 8 -0.3288 2.6282 0.4992 16 6 0.0986 3.3157 2.7160 17 1 0.9319 3.2379 3.4144 18 6 -1.1363 2.6325 3.3116 19 6 -1.5849 3.3965 4.5596 20 6 -1.9651 4.8317 4.1754 21 6 -0.7381 5.5365 3.5885 22 7 -0.2132 4.7315 2.4772 23 6 -0.0211 5.2815 1.2617 24 8 0.2514 4.5747 0.3111 25 6 -0.1415 6.7443 1.0849 26 6 -0.1166 7.5890 2.1957 27 6 -0.2252 8.9536 2.0234 28 6 -0.3687 9.4842 0.7537 29 6 -0.3990 8.6520 -0.3512 30 6 -0.2867 7.2862 -0.1931 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 3.7546 0.3350 -3.1680 37 1 2.3183 2.1068 1.9973 38 1 -1.9414 2.6313 2.5769 39 1 -0.8892 1.6060 3.5823 40 1 -2.4489 2.8982 4.9994 41 1 -0.7708 3.4189 5.2839 42 1 -2.3059 5.3704 5.0595 43 1 -2.7623 4.8099 3.4323 44 1 0.0268 5.6398 4.3581 45 1 -1.0236 6.5228 3.2225 46 1 -0.0088 7.1757 3.1876 47 1 -0.2023 9.6086 2.8817 48 1 -0.4571 10.5528 0.6245 49 1 -0.5109 9.0727 -1.3397 50 1 -0.3101 6.6377 -1.0565 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000364905078.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:56 Heat of formation + Delta-G solvation = -23.038318 kcal Electronic energy + Delta-G solvation = -31827.579823 eV Core-core repulsion = 27820.471416 eV Total energy + Delta-G solvation = -4007.108407 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.16965 -40.36340 -39.01634 -38.35056 -36.71122 -34.33073 -34.22701 -33.26823 -32.40826 -31.93485 -31.27161 -28.99274 -27.14255 -25.35097 -24.84228 -24.24117 -23.50198 -22.15455 -21.86400 -21.05198 -20.42008 -19.08734 -18.12046 -17.65486 -17.41004 -17.12732 -16.90942 -16.28789 -16.16536 -16.00536 -15.56743 -15.38672 -15.19793 -14.79836 -14.63989 -14.62581 -14.52037 -14.29134 -14.06906 -13.76636 -13.51436 -13.39750 -13.24319 -13.15293 -12.90675 -12.68111 -12.57148 -12.37234 -12.19458 -12.18993 -12.07605 -11.89813 -11.70553 -11.63956 -11.22277 -11.07269 -10.60348 -10.44731 -10.21821 -9.97612 -9.82975 -9.60965 -9.34814 -8.19105 -6.33061 -0.09412 0.38791 1.39299 1.41281 1.51992 1.62920 1.86391 2.35326 2.45392 2.66605 2.89141 3.11117 3.54467 3.78166 3.86614 3.92362 3.95037 4.00937 4.11169 4.16438 4.23170 4.29321 4.43480 4.46931 4.48316 4.51338 4.54494 4.63174 4.71547 4.81932 4.84653 4.91009 5.03391 5.03968 5.08426 5.13316 5.20536 5.23027 5.36047 5.42410 5.42450 5.45774 5.50603 5.52039 5.55707 5.67718 5.77847 5.97216 6.02141 6.12708 6.36651 6.77729 7.12374 7.24002 7.34527 7.88482 8.89801 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010668 B = 0.003828 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2624.094433 B = 7312.485285 C = 8940.660249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.110 4.110 3 C 0.288 3.712 4 H -0.014 1.014 5 C -0.549 4.549 6 H 0.067 0.933 7 C 0.013 3.987 8 N -0.919 5.919 9 Si 0.971 3.029 10 H -0.267 1.267 11 H -0.287 1.287 12 H -0.263 1.263 13 N -0.712 5.712 14 C 0.509 3.491 15 O -0.557 6.557 16 C 0.131 3.869 17 H 0.112 0.888 18 C -0.117 4.117 19 C -0.110 4.110 20 C -0.133 4.133 21 C 0.056 3.944 22 N -0.596 5.596 23 C 0.523 3.477 24 O -0.543 6.543 25 C -0.148 4.148 26 C -0.120 4.120 27 C -0.119 4.119 28 C -0.093 4.093 29 C -0.132 4.132 30 C -0.096 4.096 31 H 0.014 0.986 32 H 0.049 0.951 33 H 0.047 0.953 34 H 0.050 0.950 35 H 0.051 0.949 36 H 0.263 0.737 37 H 0.395 0.605 38 H 0.043 0.957 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.116 0.884 43 H 0.045 0.955 44 H 0.109 0.891 45 H 0.138 0.862 46 H 0.191 0.809 47 H 0.173 0.827 48 H 0.161 0.839 49 H 0.141 0.859 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.433 17.296 20.723 28.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.149 4.149 3 C 0.184 3.816 4 H 0.004 0.996 5 C -0.587 4.587 6 H 0.086 0.914 7 C -0.187 4.187 8 N -0.557 5.557 9 Si 0.795 3.205 10 H -0.193 1.193 11 H -0.213 1.213 12 H -0.187 1.187 13 N -0.363 5.363 14 C 0.295 3.705 15 O -0.435 6.435 16 C 0.024 3.976 17 H 0.130 0.870 18 C -0.156 4.156 19 C -0.147 4.147 20 C -0.171 4.171 21 C -0.063 4.063 22 N -0.331 5.331 23 C 0.313 3.687 24 O -0.421 6.421 25 C -0.151 4.151 26 C -0.137 4.137 27 C -0.136 4.136 28 C -0.111 4.111 29 C -0.150 4.150 30 C -0.115 4.115 31 H 0.033 0.967 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.229 0.771 38 H 0.062 0.938 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.109 0.891 42 H 0.134 0.866 43 H 0.064 0.936 44 H 0.127 0.873 45 H 0.155 0.845 46 H 0.208 0.792 47 H 0.190 0.810 48 H 0.179 0.821 49 H 0.159 0.841 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.860 16.819 19.362 27.477 hybrid contribution 1.098 -0.811 -1.268 1.863 sum -8.763 16.008 18.094 25.699 Atomic orbital electron populations 1.21632 0.96878 0.99020 1.00089 1.21673 0.93948 0.99053 1.00238 1.18152 0.93526 0.88718 0.81209 0.99623 1.21585 0.91664 1.42738 1.02689 0.91441 1.25850 1.03442 0.94862 0.94513 1.70183 1.37574 1.44480 1.03499 0.85366 0.78872 0.78953 0.77341 1.19255 1.21320 1.18685 1.46127 1.15156 1.57934 1.17069 1.20495 0.82377 0.78257 0.89359 1.90637 1.51480 1.58634 1.42756 1.21303 1.00217 0.81918 0.94140 0.87033 1.21810 0.95104 1.00013 0.98662 1.21584 1.02747 0.95161 0.95242 1.22048 0.96735 0.96414 1.01931 1.23497 0.97472 0.96890 0.88416 1.47832 1.65340 1.09079 1.10850 1.19245 0.77559 0.88957 0.82987 1.91144 1.47859 1.62030 1.41042 1.19961 1.07474 0.91690 0.95971 1.22729 0.97307 0.94262 0.99361 1.21685 0.98710 0.94429 0.98785 1.21832 0.95689 1.01420 0.92165 1.21377 1.00619 0.91789 1.01170 1.21280 0.97581 0.96652 0.96027 0.96665 0.93179 0.93403 0.93180 0.93060 0.92770 0.77132 0.93830 0.89974 0.89902 0.89118 0.86565 0.93561 0.87348 0.84516 0.79224 0.81002 0.82113 0.84078 0.88803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.88 8.54 71.98 0.62 -5.27 16 2 C -0.11 -5.86 5.49 30.59 0.17 -5.69 16 3 C 0.29 16.53 2.10 44.25 0.09 16.63 16 4 H -0.01 -1.01 7.55 -2.39 -0.02 -1.03 16 5 C -0.55 -31.97 8.67 25.60 0.22 -31.75 16 6 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 7 C 0.01 0.77 5.14 84.65 0.44 1.20 16 8 N -0.92 -57.74 12.06 21.45 0.26 -57.48 16 9 Si 0.97 45.11 29.55 68.60 2.03 47.14 16 10 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 11 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 12 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 13 N -0.71 -33.52 5.03 -446.10 -2.25 -35.77 16 14 C 0.51 22.90 3.43 87.66 0.30 23.20 16 15 O -0.56 -30.77 11.08 21.38 0.24 -30.54 16 16 C 0.13 4.03 3.31 44.23 0.15 4.17 16 17 H 0.11 2.71 7.92 -2.38 -0.02 2.69 16 18 C -0.12 -2.95 5.33 30.67 0.16 -2.79 16 19 C -0.11 -1.59 5.89 30.73 0.18 -1.41 16 20 C -0.13 -1.74 6.11 30.78 0.19 -1.55 16 21 C 0.06 0.85 4.65 86.36 0.40 1.25 16 22 N -0.60 -17.08 2.97 -802.56 -2.39 -19.47 16 23 C 0.52 20.00 7.43 86.78 0.65 20.64 16 24 O -0.54 -28.55 11.60 20.53 0.24 -28.31 16 25 C -0.15 -4.42 5.72 -20.09 -0.11 -4.54 16 26 C -0.12 -2.15 7.70 22.53 0.17 -1.98 16 27 C -0.12 -1.51 10.03 22.23 0.22 -1.29 16 28 C -0.09 -1.37 10.04 22.33 0.22 -1.14 16 29 C -0.13 -2.87 10.03 22.23 0.22 -2.65 16 30 C -0.10 -3.01 9.59 22.52 0.22 -2.80 16 31 H 0.01 0.81 7.93 -2.39 -0.02 0.79 16 32 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.05 2.27 5.61 -2.38 -0.01 2.26 16 34 H 0.05 2.94 6.64 -2.39 -0.02 2.93 16 35 H 0.05 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 37 H 0.39 15.83 8.37 -92.70 -0.78 15.06 16 38 H 0.04 1.40 7.97 -2.39 -0.02 1.38 16 39 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.11 0.93 8.01 -2.39 -0.02 0.91 16 45 H 0.14 1.77 3.55 -13.25 -0.05 1.72 16 46 H 0.19 2.17 4.18 -2.91 -0.01 2.16 16 47 H 0.17 0.72 8.06 -2.91 -0.02 0.70 16 48 H 0.16 1.20 8.06 -2.91 -0.02 1.18 16 49 H 0.14 2.52 8.06 -2.91 -0.02 2.49 16 50 H 0.09 3.60 7.74 -2.91 -0.02 3.57 16 Total: -1.00 -92.46 385.52 2.77 -89.69 By element: Atomic # 1 Polarization: 30.37 SS G_CDS: 0.14 Total: 30.51 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: 4.50 Total: 4.24 kcal Atomic # 7 Polarization: -108.35 SS G_CDS: -4.37 Total: -112.72 kcal Atomic # 8 Polarization: -59.32 SS G_CDS: 0.48 Total: -58.85 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -92.46 2.77 -89.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364905078.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.647 kcal (2) G-P(sol) polarization free energy of solvation -92.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds