Wall clock time and date at job start Wed Apr 1 2020 04:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47198 * 2 1 4 4 N 1.46504 * 109.46744 * 180.02562 * 3 2 1 5 5 C 1.37098 * 120.00036 * 267.24151 * 4 3 2 6 6 H 1.07999 * 120.00106 * 147.16301 * 5 4 3 7 7 C 1.38957 * 119.99707 * 327.16000 * 5 4 3 8 8 N 1.31402 * 120.00288 * 333.87541 * 7 5 4 9 9 Si 1.86801 * 119.99652 * 153.87982 * 7 5 4 10 10 H 1.48493 * 109.47369 * 84.99493 * 9 7 5 11 11 H 1.48496 * 109.47135 * 204.99766 * 9 7 5 12 12 H 1.48506 * 109.47011 * 324.99299 * 9 7 5 13 13 C 1.34775 * 119.99794 * 87.24223 * 4 3 2 14 14 O 1.21294 * 120.00587 * 0.02562 * 13 4 3 15 15 C 1.50705 * 119.99832 * 179.97438 * 13 4 3 16 16 F 1.39903 * 110.64006 * 313.14149 * 15 13 4 17 17 C 1.55160 * 110.71761 * 190.00072 * 15 13 4 18 18 C 1.54907 * 101.57805 * 206.13545 * 17 15 13 19 19 N 1.47416 * 104.83506 * 37.00934 * 18 17 15 20 20 C 1.34781 * 125.65114 * 155.90207 * 19 18 17 21 21 O 1.21513 * 120.00242 * 179.97438 * 20 19 18 22 22 O 1.34640 * 119.99685 * 359.97438 * 20 19 18 23 23 C 1.45193 * 116.99895 * 179.97438 * 22 20 19 24 24 C 1.53000 * 109.47156 * 59.99791 * 23 22 20 25 25 C 1.53002 * 109.47595 * 180.02562 * 23 22 20 26 26 C 1.53000 * 109.47467 * 300.00071 * 23 22 20 27 27 C 1.47022 * 108.70524 * 335.87321 * 19 18 17 28 28 H 1.08997 * 109.47624 * 59.99364 * 1 2 3 29 29 H 1.08999 * 109.47556 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46780 * 299.99692 * 1 2 3 31 31 H 1.08995 * 109.46443 * 240.00097 * 2 1 3 32 32 H 1.09001 * 109.46988 * 120.00297 * 2 1 3 33 33 H 1.08999 * 109.47153 * 60.00174 * 3 2 1 34 34 H 1.08997 * 109.46931 * 299.99947 * 3 2 1 35 35 H 0.96995 * 120.00187 * 179.97438 * 8 7 5 36 36 H 1.08990 * 111.00827 * 324.21152 * 17 15 13 37 37 H 1.09000 * 111.00237 * 88.06469 * 17 15 13 38 38 H 1.08995 * 110.36711 * 155.85446 * 18 17 15 39 39 H 1.09010 * 110.36756 * 278.05820 * 18 17 15 40 40 H 1.09009 * 109.46914 * 60.00161 * 24 23 22 41 41 H 1.09007 * 109.47262 * 179.97438 * 24 23 22 42 42 H 1.08997 * 109.47330 * 300.00345 * 24 23 22 43 43 H 1.09003 * 109.46730 * 59.99787 * 25 23 22 44 44 H 1.08993 * 109.47521 * 180.02562 * 25 23 22 45 45 H 1.09001 * 109.46726 * 300.00692 * 25 23 22 46 46 H 1.09004 * 109.47179 * 59.99740 * 26 23 22 47 47 H 1.09001 * 109.47370 * 179.97438 * 26 23 22 48 48 H 1.09003 * 109.46988 * 300.00292 * 26 23 22 49 49 H 1.09000 * 109.88051 * 241.64206 * 27 19 18 50 50 H 1.08998 * 109.88674 * 120.47308 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1911 1.4993 1.1850 6 1 5.1416 0.9962 1.2836 7 6 3.6633 2.2043 2.2599 8 7 2.8347 3.2019 2.0481 9 14 4.1319 1.7339 4.0059 10 1 5.4047 2.4040 4.3745 11 1 3.0588 2.1620 4.9388 12 1 4.3046 0.2614 4.0924 13 6 4.1784 1.3863 -1.1668 14 8 3.5716 1.3365 -2.2158 15 6 5.6855 1.3868 -1.1674 16 9 6.1787 2.3843 -0.3195 17 6 6.2337 1.5698 -2.6074 18 6 7.6182 0.8830 -2.5026 19 7 7.4002 -0.2719 -1.6128 20 6 8.1483 -1.3927 -1.5827 21 8 7.8754 -2.2847 -0.8040 22 8 9.1980 -1.5238 -2.4156 23 6 9.9591 -2.7571 -2.3277 24 6 9.0430 -3.9445 -2.6307 25 6 11.1039 -2.7236 -3.3423 26 6 10.5330 -2.9029 -0.9169 27 6 6.2320 0.0014 -0.7630 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 2.4660 3.6938 2.7984 36 1 5.5997 1.0622 -3.3343 37 1 6.3393 2.6263 -2.8538 38 1 7.9506 0.5477 -3.4850 39 1 8.3486 1.5659 -2.0685 40 1 8.6342 -3.8407 -3.6358 41 1 9.6145 -4.8704 -2.5651 42 1 8.2278 -3.9683 -1.9075 43 1 11.7564 -1.8777 -3.1259 44 1 11.6749 -3.6496 -3.2766 45 1 10.6954 -2.6195 -4.3475 46 1 9.7178 -2.9267 -0.1937 47 1 11.1040 -3.8290 -0.8507 48 1 11.1857 -2.0570 -0.7009 49 1 6.5306 0.0123 0.2852 50 1 5.4691 -0.7599 -0.9254 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000365766333.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:31 Heat of formation + Delta-G solvation = -155.428380 kcal Electronic energy + Delta-G solvation = -32698.550590 eV Core-core repulsion = 28254.932095 eV Total energy + Delta-G solvation = -4443.618496 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 344.194 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -47.04816 -40.70576 -38.96662 -37.82343 -36.24228 -35.22202 -34.06412 -32.88199 -31.46238 -30.89893 -29.02660 -27.54031 -27.46909 -26.01722 -25.11171 -24.02157 -21.93229 -21.47817 -20.51539 -19.38902 -19.12994 -18.07567 -17.47181 -16.59583 -16.38332 -16.05847 -15.47296 -15.18571 -14.89150 -14.61131 -14.50673 -14.19089 -14.11003 -13.81971 -13.65687 -13.40856 -13.28992 -12.98113 -12.64596 -12.54377 -12.34208 -12.25333 -12.13731 -12.00211 -11.95668 -11.72811 -11.59327 -11.44827 -11.38816 -11.35048 -11.24546 -11.13951 -10.98045 -10.74491 -10.47062 -10.40388 -10.39096 -10.21420 -9.97775 -9.80689 -9.18411 -8.65815 -8.55793 -7.67254 -6.49274 -4.09425 2.09121 2.93548 3.07141 3.19776 3.24564 3.52121 3.86952 4.03376 4.39639 4.55118 4.59954 4.61379 4.64338 4.78817 4.86065 5.11561 5.27754 5.31755 5.40271 5.43594 5.48554 5.54908 5.60455 5.64048 5.71201 5.75156 5.76210 5.81588 5.83447 5.91248 6.03251 6.08525 6.16235 6.19971 6.21137 6.28895 6.40099 6.47337 6.48457 6.53619 6.60969 6.74533 7.00680 7.28475 7.39791 7.55022 7.73841 8.23029 8.41363 8.94255 9.28181 9.71125 10.52528 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013129 B = 0.003381 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.204282 B = 8280.423907 C = 8750.736625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.134 4.134 3 C 0.112 3.888 4 N -0.412 5.412 5 C -0.347 4.347 6 H 0.095 0.905 7 C 0.053 3.947 8 N -0.846 5.846 9 Si 0.907 3.093 10 H -0.274 1.274 11 H -0.281 1.281 12 H -0.267 1.267 13 C 0.447 3.553 14 O -0.592 6.592 15 C 0.117 3.883 16 F -0.173 7.173 17 C -0.138 4.138 18 C 0.103 3.897 19 N -0.601 5.601 20 C 0.669 3.331 21 O -0.566 6.566 22 O -0.362 6.362 23 C 0.135 3.865 24 C -0.184 4.184 25 C -0.139 4.139 26 C -0.184 4.184 27 C 0.118 3.882 28 H 0.050 0.950 29 H 0.046 0.954 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.108 0.892 34 H 0.056 0.944 35 H 0.272 0.728 36 H 0.107 0.893 37 H 0.098 0.902 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.059 0.941 41 H 0.068 0.932 42 H 0.089 0.911 43 H 0.066 0.934 44 H 0.079 0.921 45 H 0.066 0.934 46 H 0.089 0.911 47 H 0.068 0.932 48 H 0.059 0.941 49 H 0.093 0.907 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.539 -7.821 -6.943 14.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.173 4.173 3 C -0.012 4.012 4 N -0.127 5.127 5 C -0.474 4.474 6 H 0.113 0.887 7 C -0.155 4.155 8 N -0.481 5.481 9 Si 0.733 3.267 10 H -0.199 1.199 11 H -0.206 1.206 12 H -0.191 1.191 13 C 0.233 3.767 14 O -0.478 6.478 15 C 0.095 3.905 16 F -0.153 7.153 17 C -0.176 4.176 18 C -0.020 4.020 19 N -0.342 5.342 20 C 0.424 3.576 21 O -0.456 6.456 22 O -0.277 6.277 23 C 0.098 3.902 24 C -0.241 4.241 25 C -0.196 4.196 26 C -0.241 4.241 27 C -0.003 4.003 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.126 0.874 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.125 0.875 37 H 0.116 0.884 38 H 0.103 0.897 39 H 0.093 0.907 40 H 0.078 0.922 41 H 0.087 0.913 42 H 0.107 0.893 43 H 0.085 0.915 44 H 0.097 0.903 45 H 0.085 0.915 46 H 0.107 0.893 47 H 0.087 0.913 48 H 0.078 0.922 49 H 0.111 0.889 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 10.132 -8.062 -7.053 14.744 hybrid contribution 0.352 -0.044 1.148 1.202 sum 10.483 -8.106 -5.905 14.508 Atomic orbital electron populations 1.21652 0.96381 1.00592 1.01456 1.21816 0.94893 0.99008 1.01543 1.21544 0.80646 0.95056 1.03904 1.43542 1.05187 1.59475 1.04496 1.19489 1.06806 1.33018 0.88069 0.88717 1.25241 0.96677 0.93143 1.00413 1.69992 1.30556 1.14932 1.32651 0.86261 0.78589 0.79692 0.82161 1.19917 1.20605 1.19114 1.19969 0.87617 0.84312 0.84788 1.90553 1.68569 1.57285 1.31410 1.21619 0.93515 0.85804 0.89554 1.92944 1.88486 1.61841 1.72038 1.23274 0.95195 1.03172 0.95989 1.22421 0.97900 0.87114 0.94518 1.47131 1.30362 1.15906 1.40763 1.17389 0.78972 0.81602 0.79638 1.90902 1.72444 1.40066 1.42164 1.86295 1.40332 1.42591 1.58434 1.22046 0.90265 0.81150 0.96708 1.22524 1.01428 0.96941 1.03211 1.21844 0.96334 1.02971 0.98478 1.22523 1.02688 1.02205 0.96695 1.22482 0.86407 0.96104 0.95356 0.93084 0.93492 0.92927 0.92830 0.92064 0.87435 0.92522 0.91814 0.87467 0.88380 0.89693 0.90731 0.92192 0.91283 0.89251 0.91503 0.90263 0.91513 0.89251 0.91281 0.92186 0.88926 0.89439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.91 37.16 0.37 -1.97 16 2 C -0.13 -2.66 6.25 -26.73 -0.17 -2.83 16 3 C 0.11 2.58 4.97 -4.04 -0.02 2.56 16 4 N -0.41 -10.05 2.55 -114.81 -0.29 -10.35 16 5 C -0.35 -8.58 7.61 -14.93 -0.11 -8.69 16 6 H 0.10 2.29 5.34 -52.49 -0.28 2.01 16 7 C 0.05 1.31 4.85 -17.47 -0.08 1.22 16 8 N -0.85 -21.73 11.48 55.50 0.64 -21.10 16 9 Si 0.91 19.27 29.63 -169.99 -5.04 14.24 16 10 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 11 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 12 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 13 C 0.45 10.50 6.63 -10.98 -0.07 10.43 16 14 O -0.59 -14.69 15.29 5.55 0.08 -14.61 16 15 C 0.12 2.35 0.94 -89.93 -0.08 2.26 16 16 F -0.17 -3.76 15.09 2.25 0.03 -3.73 16 17 C -0.14 -2.23 6.08 -24.58 -0.15 -2.37 16 18 C 0.10 1.45 6.92 -2.54 -0.02 1.43 16 19 N -0.60 -10.03 3.33 -176.31 -0.59 -10.61 16 20 C 0.67 11.22 7.93 54.06 0.43 11.65 16 21 O -0.57 -10.55 12.21 -19.28 -0.24 -10.78 16 22 O -0.36 -5.15 9.42 -40.32 -0.38 -5.53 16 23 C 0.14 1.56 1.13 -90.62 -0.10 1.45 16 24 C -0.18 -2.08 8.37 37.16 0.31 -1.77 16 25 C -0.14 -1.15 8.85 37.16 0.33 -0.82 16 26 C -0.18 -2.09 8.37 37.16 0.31 -1.78 16 27 C 0.12 2.22 5.57 -3.07 -0.02 2.21 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.11 2.62 5.40 -51.93 -0.28 2.34 16 34 H 0.06 1.35 7.50 -51.93 -0.39 0.96 16 35 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 36 H 0.11 1.79 7.27 -51.93 -0.38 1.42 16 37 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 38 H 0.08 1.02 8.04 -51.93 -0.42 0.60 16 39 H 0.07 0.98 8.14 -51.92 -0.42 0.56 16 40 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.09 1.26 5.88 -51.93 -0.31 0.96 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.09 1.27 5.88 -51.93 -0.31 0.96 16 47 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.09 1.80 6.99 -51.93 -0.36 1.44 16 50 H 0.09 1.71 7.81 -51.93 -0.41 1.31 16 LS Contribution 397.10 15.07 5.98 5.98 Total: -1.00 -29.16 397.10 -7.05 -36.21 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -8.18 Total: 7.31 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: 0.92 Total: 12.97 kcal Atomic # 7 Polarization: -41.81 SS G_CDS: -0.24 Total: -42.06 kcal Atomic # 8 Polarization: -30.40 SS G_CDS: -0.53 Total: -30.93 kcal Atomic # 9 Polarization: -3.76 SS G_CDS: 0.03 Total: -3.73 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.04 Total: 14.24 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -29.16 -7.05 -36.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000365766333.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.221 kcal (2) G-P(sol) polarization free energy of solvation -29.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds