Wall clock time and date at job start Wed Apr 1 2020 04:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47198 * 2 1 4 4 N 1.46504 * 109.46744 * 180.02562 * 3 2 1 5 5 C 1.37098 * 120.00036 * 267.24151 * 4 3 2 6 6 H 1.07999 * 120.00106 * 147.16301 * 5 4 3 7 7 C 1.38957 * 119.99707 * 327.16000 * 5 4 3 8 8 N 1.31402 * 120.00288 * 333.87541 * 7 5 4 9 9 Si 1.86801 * 119.99652 * 153.87982 * 7 5 4 10 10 H 1.48493 * 109.47369 * 84.99493 * 9 7 5 11 11 H 1.48496 * 109.47135 * 204.99766 * 9 7 5 12 12 H 1.48506 * 109.47011 * 324.99299 * 9 7 5 13 13 C 1.34775 * 119.99794 * 87.24223 * 4 3 2 14 14 O 1.21294 * 120.00587 * 0.02562 * 13 4 3 15 15 C 1.50705 * 119.99832 * 179.97438 * 13 4 3 16 16 F 1.39903 * 110.64006 * 313.14149 * 15 13 4 17 17 C 1.55160 * 110.71761 * 190.00072 * 15 13 4 18 18 C 1.54907 * 101.57805 * 206.13545 * 17 15 13 19 19 N 1.47416 * 104.83506 * 37.00934 * 18 17 15 20 20 C 1.34781 * 125.65114 * 155.90207 * 19 18 17 21 21 O 1.21513 * 120.00242 * 179.97438 * 20 19 18 22 22 O 1.34640 * 119.99685 * 359.97438 * 20 19 18 23 23 C 1.45193 * 116.99895 * 179.97438 * 22 20 19 24 24 C 1.53000 * 109.47156 * 59.99791 * 23 22 20 25 25 C 1.53002 * 109.47595 * 180.02562 * 23 22 20 26 26 C 1.53000 * 109.47467 * 300.00071 * 23 22 20 27 27 C 1.47022 * 108.70524 * 335.87321 * 19 18 17 28 28 H 1.08997 * 109.47624 * 59.99364 * 1 2 3 29 29 H 1.08999 * 109.47556 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46780 * 299.99692 * 1 2 3 31 31 H 1.08995 * 109.46443 * 240.00097 * 2 1 3 32 32 H 1.09001 * 109.46988 * 120.00297 * 2 1 3 33 33 H 1.08999 * 109.47153 * 60.00174 * 3 2 1 34 34 H 1.08997 * 109.46931 * 299.99947 * 3 2 1 35 35 H 0.96995 * 120.00187 * 179.97438 * 8 7 5 36 36 H 1.08990 * 111.00827 * 324.21152 * 17 15 13 37 37 H 1.09000 * 111.00237 * 88.06469 * 17 15 13 38 38 H 1.08995 * 110.36711 * 155.85446 * 18 17 15 39 39 H 1.09010 * 110.36756 * 278.05820 * 18 17 15 40 40 H 1.09009 * 109.46914 * 60.00161 * 24 23 22 41 41 H 1.09007 * 109.47262 * 179.97438 * 24 23 22 42 42 H 1.08997 * 109.47330 * 300.00345 * 24 23 22 43 43 H 1.09003 * 109.46730 * 59.99787 * 25 23 22 44 44 H 1.08993 * 109.47521 * 180.02562 * 25 23 22 45 45 H 1.09001 * 109.46726 * 300.00692 * 25 23 22 46 46 H 1.09004 * 109.47179 * 59.99740 * 26 23 22 47 47 H 1.09001 * 109.47370 * 179.97438 * 26 23 22 48 48 H 1.09003 * 109.46988 * 300.00292 * 26 23 22 49 49 H 1.09000 * 109.88051 * 241.64206 * 27 19 18 50 50 H 1.08998 * 109.88674 * 120.47308 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1911 1.4993 1.1850 6 1 5.1416 0.9962 1.2836 7 6 3.6633 2.2043 2.2599 8 7 2.8347 3.2019 2.0481 9 14 4.1319 1.7339 4.0059 10 1 5.4047 2.4040 4.3745 11 1 3.0588 2.1620 4.9388 12 1 4.3046 0.2614 4.0924 13 6 4.1784 1.3863 -1.1668 14 8 3.5716 1.3365 -2.2158 15 6 5.6855 1.3868 -1.1674 16 9 6.1787 2.3843 -0.3195 17 6 6.2337 1.5698 -2.6074 18 6 7.6182 0.8830 -2.5026 19 7 7.4002 -0.2719 -1.6128 20 6 8.1483 -1.3927 -1.5827 21 8 7.8754 -2.2847 -0.8040 22 8 9.1980 -1.5238 -2.4156 23 6 9.9591 -2.7571 -2.3277 24 6 9.0430 -3.9445 -2.6307 25 6 11.1039 -2.7236 -3.3423 26 6 10.5330 -2.9029 -0.9169 27 6 6.2320 0.0014 -0.7630 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 2.4660 3.6938 2.7984 36 1 5.5997 1.0622 -3.3343 37 1 6.3393 2.6263 -2.8538 38 1 7.9506 0.5477 -3.4850 39 1 8.3486 1.5659 -2.0685 40 1 8.6342 -3.8407 -3.6358 41 1 9.6145 -4.8704 -2.5651 42 1 8.2278 -3.9683 -1.9075 43 1 11.7564 -1.8777 -3.1259 44 1 11.6749 -3.6496 -3.2766 45 1 10.6954 -2.6195 -4.3475 46 1 9.7178 -2.9267 -0.1937 47 1 11.1040 -3.8290 -0.8507 48 1 11.1857 -2.0570 -0.7009 49 1 6.5306 0.0123 0.2852 50 1 5.4691 -0.7599 -0.9254 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000365766333.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:30 Heat of formation + Delta-G solvation = -171.130670 kcal Electronic energy + Delta-G solvation = -32699.231493 eV Core-core repulsion = 28254.932095 eV Total energy + Delta-G solvation = -4444.299398 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 344.194 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -48.73903 -41.91629 -40.68345 -39.18726 -37.58250 -37.02012 -35.07257 -34.56769 -33.31568 -32.28722 -30.44279 -28.35501 -28.26870 -27.71413 -26.88437 -25.45750 -23.35976 -22.69308 -22.15085 -20.95362 -20.52658 -19.60527 -18.94620 -18.02920 -17.73695 -17.51013 -17.00262 -16.74796 -16.39613 -16.16112 -15.81058 -15.73045 -15.54450 -15.19870 -15.10354 -14.83273 -14.75314 -14.28496 -14.06583 -13.82808 -13.69272 -13.39665 -13.33651 -13.28625 -13.08786 -13.01738 -12.90920 -12.85783 -12.73723 -12.63904 -12.56963 -12.47744 -12.39106 -12.27912 -12.13159 -12.04289 -11.83336 -11.54378 -11.40407 -11.17316 -11.04156 -10.43806 -9.97236 -9.58221 -8.38912 -6.04679 0.85675 1.34342 1.45903 1.55914 1.64141 1.73372 2.25635 2.60907 2.80713 2.96956 3.11334 3.15775 3.63661 3.76727 3.80796 3.88135 3.95932 4.04093 4.12663 4.19042 4.29340 4.36364 4.47189 4.51827 4.53780 4.62826 4.66968 4.68021 4.77886 4.78151 4.83324 4.85946 4.90045 4.93644 4.93983 5.06605 5.09109 5.15962 5.20307 5.29880 5.32776 5.34962 5.41713 5.43221 5.52375 5.87049 6.27065 6.32298 7.02565 7.14569 7.39443 7.82154 8.63969 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013129 B = 0.003381 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.204282 B = 8280.423907 C = 8750.736625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.125 4.125 3 C 0.111 3.889 4 N -0.425 5.425 5 C -0.359 4.359 6 H 0.095 0.905 7 C 0.017 3.983 8 N -0.876 5.876 9 Si 0.968 3.032 10 H -0.272 1.272 11 H -0.274 1.274 12 H -0.264 1.264 13 C 0.436 3.564 14 O -0.612 6.612 15 C 0.114 3.886 16 F -0.184 7.184 17 C -0.129 4.129 18 C 0.110 3.890 19 N -0.605 5.605 20 C 0.668 3.332 21 O -0.590 6.590 22 O -0.358 6.358 23 C 0.121 3.879 24 C -0.181 4.181 25 C -0.132 4.132 26 C -0.181 4.181 27 C 0.131 3.869 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.042 0.958 32 H 0.055 0.945 33 H 0.095 0.905 34 H 0.040 0.960 35 H 0.275 0.725 36 H 0.101 0.899 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.090 0.910 40 H 0.063 0.937 41 H 0.095 0.905 42 H 0.055 0.945 43 H 0.071 0.929 44 H 0.105 0.895 45 H 0.071 0.929 46 H 0.055 0.945 47 H 0.095 0.905 48 H 0.063 0.937 49 H 0.081 0.919 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.361 -8.791 -7.514 16.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.163 4.163 3 C -0.012 4.012 4 N -0.140 5.140 5 C -0.486 4.486 6 H 0.113 0.887 7 C -0.188 4.188 8 N -0.512 5.512 9 Si 0.791 3.209 10 H -0.198 1.198 11 H -0.199 1.199 12 H -0.189 1.189 13 C 0.223 3.777 14 O -0.500 6.500 15 C 0.092 3.908 16 F -0.165 7.165 17 C -0.167 4.167 18 C -0.012 4.012 19 N -0.346 5.346 20 C 0.424 3.576 21 O -0.481 6.481 22 O -0.272 6.272 23 C 0.085 3.915 24 C -0.238 4.238 25 C -0.189 4.189 26 C -0.238 4.238 27 C 0.008 3.992 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.113 0.887 34 H 0.059 0.941 35 H 0.085 0.915 36 H 0.119 0.881 37 H 0.132 0.868 38 H 0.132 0.868 39 H 0.108 0.892 40 H 0.082 0.918 41 H 0.113 0.887 42 H 0.074 0.926 43 H 0.090 0.910 44 H 0.123 0.877 45 H 0.090 0.910 46 H 0.074 0.926 47 H 0.113 0.887 48 H 0.082 0.918 49 H 0.099 0.901 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 11.973 -9.031 -7.643 16.832 hybrid contribution -0.202 0.237 1.274 1.312 sum 11.771 -8.794 -6.368 16.014 Atomic orbital electron populations 1.21610 0.93410 1.02428 1.01900 1.21716 0.97445 0.96485 1.00670 1.21539 0.80492 0.96829 1.02303 1.43799 1.05759 1.59592 1.04875 1.19677 1.07167 1.33257 0.88504 0.88705 1.25976 0.96611 0.92754 1.03489 1.70060 1.31606 1.15735 1.33759 0.85347 0.78330 0.79315 0.77911 1.19767 1.19896 1.18858 1.20587 0.89320 0.83540 0.84289 1.90519 1.69576 1.58005 1.31878 1.21643 0.91315 0.86097 0.91788 1.92912 1.88361 1.62392 1.72789 1.23281 0.96041 1.04485 0.92930 1.22564 0.96719 0.86284 0.95599 1.47123 1.29808 1.16808 1.40840 1.17493 0.79368 0.81117 0.79662 1.90901 1.73153 1.40893 1.43199 1.86315 1.39359 1.44161 1.57372 1.22524 0.90887 0.80120 0.97922 1.22488 1.00792 0.98276 1.02256 1.21873 0.95029 1.04587 0.97419 1.22488 1.01772 1.03769 0.95786 1.22106 0.86965 0.94969 0.95173 0.92667 0.90937 0.92472 0.93902 0.92575 0.88724 0.94146 0.91478 0.88063 0.86821 0.86831 0.89175 0.91842 0.88664 0.92563 0.91027 0.87687 0.91014 0.92550 0.88669 0.91843 0.90104 0.90981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.32 9.91 71.98 0.71 -3.61 16 2 C -0.12 -5.02 6.25 30.59 0.19 -4.83 16 3 C 0.11 5.31 4.97 86.38 0.43 5.74 16 4 N -0.43 -21.39 2.55 -635.53 -1.62 -23.02 16 5 C -0.36 -18.16 7.61 84.04 0.64 -17.52 16 6 H 0.10 4.71 5.34 -2.91 -0.02 4.69 16 7 C 0.02 0.84 4.85 84.93 0.41 1.25 16 8 N -0.88 -45.66 11.48 21.66 0.25 -45.42 16 9 Si 0.97 39.64 29.63 68.60 2.03 41.67 16 10 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 11 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 12 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 13 C 0.44 21.04 6.63 87.66 0.58 21.62 16 14 O -0.61 -31.19 15.29 -3.07 -0.05 -31.23 16 15 C 0.11 4.60 0.94 -10.35 -0.01 4.59 16 16 F -0.18 -8.10 15.09 44.97 0.68 -7.42 16 17 C -0.13 -4.06 6.08 31.99 0.19 -3.86 16 18 C 0.11 2.88 6.92 86.86 0.60 3.48 16 19 N -0.60 -19.90 3.33 -942.11 -3.13 -23.04 16 20 C 0.67 22.15 7.93 129.79 1.03 23.18 16 21 O -0.59 -22.43 12.21 19.80 0.24 -22.19 16 22 O -0.36 -9.63 9.42 -55.49 -0.52 -10.15 16 23 C 0.12 2.55 1.13 -10.79 -0.01 2.54 16 24 C -0.18 -3.83 8.37 71.98 0.60 -3.23 16 25 C -0.13 -1.73 8.85 71.98 0.64 -1.09 16 26 C -0.18 -3.83 8.37 71.98 0.60 -3.23 16 27 C 0.13 5.03 5.57 86.73 0.48 5.51 16 28 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 31 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.09 4.76 5.40 -2.39 -0.01 4.75 16 34 H 0.04 2.00 7.50 -2.39 -0.02 1.98 16 35 H 0.28 13.44 8.31 -92.71 -0.77 12.67 16 36 H 0.10 3.33 7.27 -2.39 -0.02 3.31 16 37 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16 38 H 0.11 2.38 8.04 -2.39 -0.02 2.36 16 39 H 0.09 2.14 8.14 -2.38 -0.02 2.12 16 40 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 41 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 42 H 0.06 1.59 5.88 -2.39 -0.01 1.58 16 43 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.06 1.60 5.88 -2.39 -0.01 1.58 16 47 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 48 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 49 H 0.08 3.26 6.99 -2.39 -0.02 3.24 16 50 H 0.07 2.95 7.81 -2.39 -0.02 2.93 16 Total: -1.00 -64.82 397.10 5.90 -58.92 By element: Atomic # 1 Polarization: 30.40 SS G_CDS: 0.93 Total: 31.34 kcal Atomic # 6 Polarization: 23.44 SS G_CDS: 7.09 Total: 30.54 kcal Atomic # 7 Polarization: -86.96 SS G_CDS: -4.51 Total: -91.47 kcal Atomic # 8 Polarization: -63.24 SS G_CDS: -0.33 Total: -63.57 kcal Atomic # 9 Polarization: -8.10 SS G_CDS: 0.68 Total: -7.42 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 2.03 Total: 41.67 kcal Total: -64.82 5.90 -58.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000365766333.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.214 kcal (2) G-P(sol) polarization free energy of solvation -64.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds