Wall clock time and date at job start Wed Apr 1 2020 04:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47200 * 2 1 4 4 N 1.46500 * 109.47083 * 179.97438 * 3 2 1 5 5 C 1.37105 * 120.00079 * 90.00419 * 4 3 2 6 6 H 1.07999 * 119.99770 * 218.05345 * 5 4 3 7 7 C 1.38953 * 119.99817 * 38.04659 * 5 4 3 8 8 N 1.31406 * 119.99752 * 199.46086 * 7 5 4 9 9 Si 1.86799 * 119.99749 * 19.18791 * 7 5 4 10 10 H 1.48505 * 109.46996 * 265.09250 * 9 7 5 11 11 H 1.48499 * 109.47469 * 25.09282 * 9 7 5 12 12 H 1.48499 * 109.46797 * 145.09703 * 9 7 5 13 13 C 1.34780 * 119.99898 * 270.00022 * 4 3 2 14 14 O 1.21290 * 120.00054 * 355.23571 * 13 4 3 15 15 C 1.50702 * 119.99546 * 175.23391 * 13 4 3 16 16 F 1.39893 * 110.64457 * 52.12407 * 15 13 4 17 17 C 1.55161 * 110.71890 * 175.46249 * 15 13 4 18 18 C 1.54906 * 101.58496 * 153.86698 * 17 15 13 19 19 N 1.47429 * 104.82755 * 322.98676 * 18 17 15 20 20 C 1.34776 * 125.64588 * 204.08997 * 19 18 17 21 21 O 1.21509 * 120.00183 * 180.02562 * 20 19 18 22 22 O 1.34642 * 120.00089 * 0.04906 * 20 19 18 23 23 C 1.45204 * 117.00034 * 179.97438 * 22 20 19 24 24 C 1.53008 * 109.46826 * 59.99684 * 23 22 20 25 25 C 1.52990 * 109.46933 * 179.97438 * 23 22 20 26 26 C 1.52995 * 109.47192 * 300.00079 * 23 22 20 27 27 C 1.47018 * 108.70350 * 24.13096 * 19 18 17 28 28 H 1.09002 * 109.47087 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46923 * 299.99288 * 1 2 3 30 30 H 1.08995 * 109.46784 * 60.00144 * 1 2 3 31 31 H 1.09006 * 109.47352 * 240.00212 * 2 1 3 32 32 H 1.09002 * 109.47312 * 120.00538 * 2 1 3 33 33 H 1.09003 * 109.46441 * 60.00546 * 3 2 1 34 34 H 1.08997 * 109.46984 * 300.00407 * 3 2 1 35 35 H 0.97000 * 119.99886 * 359.72374 * 8 7 5 36 36 H 1.09001 * 110.99801 * 271.94324 * 17 15 13 37 37 H 1.08997 * 111.00434 * 35.78377 * 17 15 13 38 38 H 1.08996 * 110.36579 * 204.15621 * 18 17 15 39 39 H 1.09001 * 110.36780 * 81.82315 * 18 17 15 40 40 H 1.08997 * 109.46642 * 60.00092 * 24 23 22 41 41 H 1.08993 * 109.47010 * 179.97438 * 24 23 22 42 42 H 1.08992 * 109.47387 * 300.00058 * 24 23 22 43 43 H 1.08998 * 109.47034 * 60.00298 * 25 23 22 44 44 H 1.09001 * 109.47010 * 180.02562 * 25 23 22 45 45 H 1.08997 * 109.47638 * 300.00583 * 25 23 22 46 46 H 1.09002 * 109.47307 * 59.99683 * 26 23 22 47 47 H 1.09001 * 109.47111 * 180.02562 * 26 23 22 48 48 H 1.08998 * 109.46945 * 299.99805 * 26 23 22 49 49 H 1.09005 * 109.87936 * 239.51793 * 27 19 18 50 50 H 1.09000 * 110.01312 * 118.43010 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1911 1.4424 -1.1864 6 1 5.0989 0.8658 -1.2854 7 6 3.7182 2.1839 -2.2622 8 7 4.1231 1.9053 -3.4809 9 14 2.5012 3.5720 -1.9767 10 1 1.1186 3.0660 -2.1714 11 1 2.6502 4.0839 -0.5907 12 1 2.7670 4.6695 -2.9411 13 6 4.1784 1.4426 1.1681 14 8 3.5747 1.5300 2.2165 15 6 5.6815 1.3341 1.1710 16 9 6.2470 2.2949 0.3258 17 6 6.2390 1.4693 2.6126 18 6 7.5705 0.6849 2.5062 19 7 7.2711 -0.4466 1.6098 20 6 7.9364 -1.6182 1.5747 21 8 7.6012 -2.4840 0.7908 22 8 8.9722 -1.8294 2.4085 23 6 9.6418 -3.1145 2.3157 24 6 10.2062 -3.2947 0.9049 25 6 10.7839 -3.1691 3.3322 26 6 8.6412 -4.2335 2.6114 27 6 6.1273 -0.0849 0.7598 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.6767 1.9562 0.8901 34 1 1.6766 1.9563 -0.8899 35 1 4.7551 1.1845 -3.6290 36 1 6.4201 2.5142 2.8650 37 1 5.5686 1.0050 3.3359 38 1 7.8759 0.3211 3.4872 39 1 8.3485 1.3149 2.0751 40 1 10.9190 -2.4975 0.6943 41 1 10.7092 -4.2591 0.8354 42 1 9.3928 -3.2556 0.1805 43 1 10.3821 -3.0405 4.3373 44 1 11.2868 -4.1336 3.2622 45 1 11.4966 -2.3719 3.1212 46 1 7.8278 -4.1944 1.8869 47 1 9.1440 -5.1981 2.5422 48 1 8.2392 -4.1051 3.6164 49 1 5.3111 -0.7901 0.9170 50 1 6.4252 -0.0907 -0.2887 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000365766334.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:35 Heat of formation + Delta-G solvation = -152.314969 kcal Electronic energy + Delta-G solvation = -32810.873039 eV Core-core repulsion = 28367.389551 eV Total energy + Delta-G solvation = -4443.483488 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 344.194 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -47.16717 -40.73940 -39.21082 -37.94809 -36.30713 -35.45588 -34.09320 -33.11866 -31.69615 -31.00445 -29.15978 -27.55652 -27.48384 -26.15755 -24.88426 -24.07855 -21.99719 -21.52810 -21.01153 -19.42924 -19.06445 -18.23807 -17.60037 -16.76950 -16.53893 -16.21393 -15.63241 -15.56203 -15.08243 -14.72872 -14.54818 -14.36117 -14.15795 -13.83891 -13.79288 -13.51597 -13.38147 -13.08212 -12.69448 -12.66056 -12.54310 -12.43625 -12.28680 -12.11871 -12.01958 -11.97310 -11.77772 -11.51944 -11.47820 -11.41829 -11.30682 -11.23515 -10.98580 -10.80171 -10.46904 -10.42498 -10.22382 -10.00774 -9.83453 -9.58453 -9.23034 -8.76953 -8.67091 -8.01184 -6.88339 -4.18709 2.04978 2.90463 3.08425 3.21190 3.38899 3.44959 3.80334 4.03935 4.15284 4.44839 4.51642 4.58854 4.62618 4.77191 4.85706 5.02881 5.17744 5.30269 5.38888 5.39421 5.40728 5.47767 5.53255 5.53626 5.56452 5.60029 5.63036 5.73732 5.81033 5.81825 5.84801 5.96106 6.03249 6.07079 6.13409 6.19308 6.23400 6.26414 6.27395 6.36435 6.43207 6.44530 6.64942 6.80376 7.44355 7.50837 7.81834 8.22179 8.38228 8.86579 8.99668 9.51707 10.49910 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015434 B = 0.003273 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.738175 B = 8552.543765 C = 8725.964826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.131 4.131 3 C 0.100 3.900 4 N -0.439 5.439 5 C -0.427 4.427 6 H 0.095 0.905 7 C 0.033 3.967 8 N -0.863 5.863 9 Si 1.050 2.950 10 H -0.280 1.280 11 H -0.276 1.276 12 H -0.285 1.285 13 C 0.459 3.541 14 O -0.584 6.584 15 C 0.120 3.880 16 F -0.172 7.172 17 C -0.138 4.138 18 C 0.103 3.897 19 N -0.601 5.601 20 C 0.669 3.331 21 O -0.565 6.565 22 O -0.362 6.362 23 C 0.135 3.865 24 C -0.184 4.184 25 C -0.139 4.139 26 C -0.184 4.184 27 C 0.120 3.880 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.277 0.723 36 H 0.099 0.901 37 H 0.107 0.893 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.059 0.941 41 H 0.069 0.931 42 H 0.089 0.911 43 H 0.066 0.934 44 H 0.079 0.921 45 H 0.066 0.934 46 H 0.088 0.912 47 H 0.069 0.931 48 H 0.059 0.941 49 H 0.086 0.914 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.907 -6.594 11.163 15.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.169 4.169 3 C -0.023 4.023 4 N -0.156 5.156 5 C -0.554 4.554 6 H 0.112 0.888 7 C -0.178 4.178 8 N -0.495 5.495 9 Si 0.879 3.121 10 H -0.208 1.208 11 H -0.202 1.202 12 H -0.212 1.212 13 C 0.245 3.755 14 O -0.470 6.470 15 C 0.097 3.903 16 F -0.152 7.152 17 C -0.176 4.176 18 C -0.020 4.020 19 N -0.343 5.343 20 C 0.424 3.576 21 O -0.454 6.454 22 O -0.277 6.277 23 C 0.098 3.902 24 C -0.241 4.241 25 C -0.196 4.196 26 C -0.241 4.241 27 C -0.001 4.001 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.118 0.882 37 H 0.125 0.875 38 H 0.104 0.896 39 H 0.093 0.907 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.107 0.893 43 H 0.085 0.915 44 H 0.098 0.902 45 H 0.085 0.915 46 H 0.107 0.893 47 H 0.088 0.912 48 H 0.078 0.922 49 H 0.104 0.896 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 6.747 -5.776 10.582 13.815 hybrid contribution 1.108 -1.215 0.374 1.686 sum 7.855 -6.991 10.956 15.186 Atomic orbital electron populations 1.21706 0.96004 1.01244 1.01597 1.21754 0.95135 0.97563 1.02460 1.21752 0.81892 0.97059 1.01563 1.43805 1.04301 1.61915 1.05595 1.20602 1.12338 1.33305 0.89124 0.88777 1.26293 1.00531 0.99200 0.91769 1.70794 1.28505 1.30134 1.20044 0.83921 0.75256 0.76441 0.76461 1.20773 1.20167 1.21199 1.20042 0.87815 0.82918 0.84729 1.90565 1.68791 1.55862 1.31748 1.21560 0.92315 0.86673 0.89705 1.92943 1.85674 1.64385 1.72241 1.23284 0.95975 1.02694 0.95686 1.22428 0.97751 0.87315 0.94478 1.47119 1.33349 1.13316 1.40478 1.17381 0.78903 0.81621 0.79675 1.90909 1.69434 1.43277 1.41811 1.86294 1.43590 1.39529 1.58247 1.22056 0.91670 0.79700 0.96747 1.22522 1.02725 1.02219 0.96662 1.21842 0.96451 1.02893 0.98425 1.22520 1.00830 0.97551 1.03195 1.22443 0.87517 0.94688 0.95494 0.92924 0.92882 0.92745 0.91207 0.92208 0.90788 0.91442 0.91179 0.88238 0.87500 0.89576 0.90674 0.92171 0.91234 0.89256 0.91516 0.90228 0.91494 0.89282 0.91233 0.92204 0.89608 0.88769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.91 37.16 0.37 -1.87 16 2 C -0.13 -2.45 6.26 -26.73 -0.17 -2.61 16 3 C 0.10 2.13 4.22 -4.04 -0.02 2.11 16 4 N -0.44 -10.27 2.18 -114.81 -0.25 -10.52 16 5 C -0.43 -10.75 7.92 -14.93 -0.12 -10.87 16 6 H 0.09 2.46 5.43 -52.49 -0.28 2.18 16 7 C 0.03 0.85 5.35 -17.47 -0.09 0.76 16 8 N -0.86 -23.72 13.69 55.50 0.76 -22.96 16 9 Si 1.05 23.94 25.22 -169.99 -4.29 19.65 16 10 H -0.28 -5.91 6.70 56.52 0.38 -5.54 16 11 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 12 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 13 C 0.46 10.33 6.66 -10.98 -0.07 10.25 16 14 O -0.58 -13.68 15.23 5.55 0.08 -13.60 16 15 C 0.12 2.35 0.95 -89.94 -0.09 2.26 16 16 F -0.17 -3.70 15.35 2.25 0.03 -3.67 16 17 C -0.14 -2.14 6.03 -24.58 -0.15 -2.29 16 18 C 0.10 1.42 6.92 -2.53 -0.02 1.41 16 19 N -0.60 -10.08 3.33 -176.30 -0.59 -10.66 16 20 C 0.67 11.34 7.93 54.05 0.43 11.77 16 21 O -0.57 -10.73 12.21 -19.28 -0.24 -10.97 16 22 O -0.36 -5.18 9.42 -40.33 -0.38 -5.56 16 23 C 0.14 1.57 1.13 -90.62 -0.10 1.47 16 24 C -0.18 -2.13 8.37 37.16 0.31 -1.82 16 25 C -0.14 -1.15 8.85 37.15 0.33 -0.82 16 26 C -0.18 -2.10 8.37 37.15 0.31 -1.78 16 27 C 0.12 2.29 5.44 -3.07 -0.02 2.27 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.07 1.55 7.36 -51.93 -0.38 1.17 16 34 H 0.07 1.47 3.08 -51.93 -0.16 1.31 16 35 H 0.28 7.55 8.73 -40.82 -0.36 7.20 16 36 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 37 H 0.11 1.70 7.33 -51.93 -0.38 1.32 16 38 H 0.09 1.01 8.04 -51.93 -0.42 0.59 16 39 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.09 1.30 5.88 -51.93 -0.31 0.99 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.09 1.27 5.88 -51.93 -0.31 0.97 16 47 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 49 H 0.09 1.70 7.81 -51.93 -0.41 1.29 16 50 H 0.09 1.94 6.84 -51.93 -0.36 1.58 16 LS Contribution 392.22 15.07 5.91 5.91 Total: -1.00 -29.56 392.22 -6.13 -35.69 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -8.09 Total: 6.47 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: 0.91 Total: 10.22 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: -0.08 Total: -44.14 kcal Atomic # 8 Polarization: -29.60 SS G_CDS: -0.53 Total: -30.13 kcal Atomic # 9 Polarization: -3.70 SS G_CDS: 0.03 Total: -3.67 kcal Atomic # 14 Polarization: 23.94 SS G_CDS: -4.29 Total: 19.65 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -29.56 -6.13 -35.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000365766334.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.623 kcal (2) G-P(sol) polarization free energy of solvation -29.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds