Wall clock time and date at job start Wed Apr 1 2020 04:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47200 * 2 1 4 4 N 1.46500 * 109.47083 * 179.97438 * 3 2 1 5 5 C 1.37105 * 120.00079 * 90.00419 * 4 3 2 6 6 H 1.07999 * 119.99770 * 218.05345 * 5 4 3 7 7 C 1.38953 * 119.99817 * 38.04659 * 5 4 3 8 8 N 1.31406 * 119.99752 * 199.46086 * 7 5 4 9 9 Si 1.86799 * 119.99749 * 19.18791 * 7 5 4 10 10 H 1.48505 * 109.46996 * 265.09250 * 9 7 5 11 11 H 1.48499 * 109.47469 * 25.09282 * 9 7 5 12 12 H 1.48499 * 109.46797 * 145.09703 * 9 7 5 13 13 C 1.34780 * 119.99898 * 270.00022 * 4 3 2 14 14 O 1.21290 * 120.00054 * 355.23571 * 13 4 3 15 15 C 1.50702 * 119.99546 * 175.23391 * 13 4 3 16 16 F 1.39893 * 110.64457 * 52.12407 * 15 13 4 17 17 C 1.55161 * 110.71890 * 175.46249 * 15 13 4 18 18 C 1.54906 * 101.58496 * 153.86698 * 17 15 13 19 19 N 1.47429 * 104.82755 * 322.98676 * 18 17 15 20 20 C 1.34776 * 125.64588 * 204.08997 * 19 18 17 21 21 O 1.21509 * 120.00183 * 180.02562 * 20 19 18 22 22 O 1.34642 * 120.00089 * 0.04906 * 20 19 18 23 23 C 1.45204 * 117.00034 * 179.97438 * 22 20 19 24 24 C 1.53008 * 109.46826 * 59.99684 * 23 22 20 25 25 C 1.52990 * 109.46933 * 179.97438 * 23 22 20 26 26 C 1.52995 * 109.47192 * 300.00079 * 23 22 20 27 27 C 1.47018 * 108.70350 * 24.13096 * 19 18 17 28 28 H 1.09002 * 109.47087 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46923 * 299.99288 * 1 2 3 30 30 H 1.08995 * 109.46784 * 60.00144 * 1 2 3 31 31 H 1.09006 * 109.47352 * 240.00212 * 2 1 3 32 32 H 1.09002 * 109.47312 * 120.00538 * 2 1 3 33 33 H 1.09003 * 109.46441 * 60.00546 * 3 2 1 34 34 H 1.08997 * 109.46984 * 300.00407 * 3 2 1 35 35 H 0.97000 * 119.99886 * 359.72374 * 8 7 5 36 36 H 1.09001 * 110.99801 * 271.94324 * 17 15 13 37 37 H 1.08997 * 111.00434 * 35.78377 * 17 15 13 38 38 H 1.08996 * 110.36579 * 204.15621 * 18 17 15 39 39 H 1.09001 * 110.36780 * 81.82315 * 18 17 15 40 40 H 1.08997 * 109.46642 * 60.00092 * 24 23 22 41 41 H 1.08993 * 109.47010 * 179.97438 * 24 23 22 42 42 H 1.08992 * 109.47387 * 300.00058 * 24 23 22 43 43 H 1.08998 * 109.47034 * 60.00298 * 25 23 22 44 44 H 1.09001 * 109.47010 * 180.02562 * 25 23 22 45 45 H 1.08997 * 109.47638 * 300.00583 * 25 23 22 46 46 H 1.09002 * 109.47307 * 59.99683 * 26 23 22 47 47 H 1.09001 * 109.47111 * 180.02562 * 26 23 22 48 48 H 1.08998 * 109.46945 * 299.99805 * 26 23 22 49 49 H 1.09005 * 109.87936 * 239.51793 * 27 19 18 50 50 H 1.09000 * 110.01312 * 118.43010 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1911 1.4424 -1.1864 6 1 5.0989 0.8658 -1.2854 7 6 3.7182 2.1839 -2.2622 8 7 4.1231 1.9053 -3.4809 9 14 2.5012 3.5720 -1.9767 10 1 1.1186 3.0660 -2.1714 11 1 2.6502 4.0839 -0.5907 12 1 2.7670 4.6695 -2.9411 13 6 4.1784 1.4426 1.1681 14 8 3.5747 1.5300 2.2165 15 6 5.6815 1.3341 1.1710 16 9 6.2470 2.2949 0.3258 17 6 6.2390 1.4693 2.6126 18 6 7.5705 0.6849 2.5062 19 7 7.2711 -0.4466 1.6098 20 6 7.9364 -1.6182 1.5747 21 8 7.6012 -2.4840 0.7908 22 8 8.9722 -1.8294 2.4085 23 6 9.6418 -3.1145 2.3157 24 6 10.2062 -3.2947 0.9049 25 6 10.7839 -3.1691 3.3322 26 6 8.6412 -4.2335 2.6114 27 6 6.1273 -0.0849 0.7598 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.6767 1.9562 0.8901 34 1 1.6766 1.9563 -0.8899 35 1 4.7551 1.1845 -3.6290 36 1 6.4201 2.5142 2.8650 37 1 5.5686 1.0050 3.3359 38 1 7.8759 0.3211 3.4872 39 1 8.3485 1.3149 2.0751 40 1 10.9190 -2.4975 0.6943 41 1 10.7092 -4.2591 0.8354 42 1 9.3928 -3.2556 0.1805 43 1 10.3821 -3.0405 4.3373 44 1 11.2868 -4.1336 3.2622 45 1 11.4966 -2.3719 3.1212 46 1 7.8278 -4.1944 1.8869 47 1 9.1440 -5.1981 2.5422 48 1 8.2392 -4.1051 3.6164 49 1 5.3111 -0.7901 0.9170 50 1 6.4252 -0.0907 -0.2887 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000365766334.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:34 Heat of formation + Delta-G solvation = -169.522818 kcal Electronic energy + Delta-G solvation = -32811.619227 eV Core-core repulsion = 28367.389551 eV Total energy + Delta-G solvation = -4444.229676 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 344.194 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -48.84666 -41.98001 -40.92739 -39.28521 -37.68012 -37.19603 -35.12968 -34.81027 -33.54253 -32.38362 -30.56482 -28.39781 -28.30173 -27.69752 -26.72782 -25.56333 -23.38285 -22.74946 -22.56737 -20.88997 -20.60356 -19.86992 -19.03756 -18.40859 -17.79617 -17.57366 -17.36298 -17.04492 -16.42845 -16.19127 -16.01306 -15.78303 -15.61506 -15.30963 -15.16414 -14.90985 -14.88846 -14.48330 -14.24507 -14.09308 -13.90143 -13.70335 -13.37837 -13.36955 -13.13891 -12.98409 -12.92724 -12.89543 -12.76573 -12.68643 -12.49617 -12.46511 -12.41603 -12.32485 -12.02478 -11.89281 -11.64943 -11.45742 -11.44807 -11.23098 -11.01900 -10.59056 -10.05956 -9.93802 -8.93881 -6.23163 0.78602 1.27370 1.36904 1.57901 1.58721 1.64575 2.26498 2.29369 2.72472 2.91921 3.01387 3.06547 3.53982 3.69465 3.72969 3.77235 3.92132 3.92297 3.97397 4.06763 4.10167 4.28620 4.35044 4.41842 4.47894 4.52010 4.58513 4.59112 4.63890 4.67306 4.74089 4.78187 4.81906 4.86845 4.88897 4.89904 5.02422 5.07824 5.12675 5.19643 5.25891 5.30812 5.32143 5.37724 5.58999 5.76469 6.17987 6.21093 6.90549 7.08602 7.09507 7.58879 8.43033 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015434 B = 0.003273 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.738175 B = 8552.543765 C = 8725.964826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.125 4.125 3 C 0.091 3.909 4 N -0.453 5.453 5 C -0.416 4.416 6 H 0.074 0.926 7 C -0.005 4.005 8 N -0.892 5.892 9 Si 1.078 2.922 10 H -0.251 1.251 11 H -0.274 1.274 12 H -0.286 1.286 13 C 0.457 3.543 14 O -0.591 6.591 15 C 0.112 3.888 16 F -0.185 7.185 17 C -0.126 4.126 18 C 0.107 3.893 19 N -0.605 5.605 20 C 0.667 3.333 21 O -0.593 6.593 22 O -0.356 6.356 23 C 0.121 3.879 24 C -0.182 4.182 25 C -0.132 4.132 26 C -0.181 4.181 27 C 0.134 3.866 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.266 0.734 36 H 0.120 0.880 37 H 0.106 0.894 38 H 0.117 0.883 39 H 0.088 0.912 40 H 0.062 0.938 41 H 0.096 0.904 42 H 0.053 0.947 43 H 0.073 0.927 44 H 0.105 0.895 45 H 0.071 0.929 46 H 0.053 0.947 47 H 0.095 0.905 48 H 0.065 0.935 49 H 0.070 0.930 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.404 -6.699 13.617 17.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.163 4.163 3 C -0.030 4.030 4 N -0.172 5.172 5 C -0.543 4.543 6 H 0.092 0.908 7 C -0.210 4.210 8 N -0.525 5.525 9 Si 0.902 3.098 10 H -0.177 1.177 11 H -0.199 1.199 12 H -0.213 1.213 13 C 0.243 3.757 14 O -0.477 6.477 15 C 0.090 3.910 16 F -0.165 7.165 17 C -0.165 4.165 18 C -0.014 4.014 19 N -0.347 5.347 20 C 0.423 3.577 21 O -0.484 6.484 22 O -0.270 6.270 23 C 0.085 3.915 24 C -0.239 4.239 25 C -0.188 4.188 26 C -0.238 4.238 27 C 0.011 3.989 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.139 0.861 37 H 0.124 0.876 38 H 0.135 0.865 39 H 0.107 0.893 40 H 0.081 0.919 41 H 0.114 0.886 42 H 0.072 0.928 43 H 0.092 0.908 44 H 0.124 0.876 45 H 0.090 0.910 46 H 0.072 0.928 47 H 0.114 0.886 48 H 0.084 0.916 49 H 0.088 0.912 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.255 -5.895 13.067 16.066 hybrid contribution 1.030 -1.281 -0.311 1.673 sum 8.285 -7.175 12.756 16.818 Atomic orbital electron populations 1.21682 0.92827 1.02936 1.02482 1.21693 0.97868 0.95559 1.01206 1.21939 0.80746 0.98731 1.01615 1.43952 1.05332 1.62622 1.05260 1.20421 1.11767 1.32376 0.89774 0.90799 1.27262 1.01722 1.00602 0.91394 1.70881 1.29868 1.30781 1.20984 0.83566 0.75438 0.74453 0.76321 1.17728 1.19925 1.21280 1.20522 0.89141 0.81701 0.84294 1.90546 1.69500 1.55848 1.31759 1.21704 0.90711 0.86454 0.92147 1.92912 1.85664 1.64859 1.73086 1.23317 0.96432 1.04399 0.92332 1.22622 0.97020 0.86291 0.95478 1.47129 1.32758 1.14222 1.40546 1.17515 0.79290 0.81212 0.79675 1.90908 1.70261 1.44232 1.42967 1.86316 1.42418 1.41204 1.57105 1.22543 0.92497 0.78562 0.97867 1.22491 1.01627 1.03897 0.95872 1.21870 0.95005 1.04581 0.97381 1.22483 1.00024 0.98971 1.02301 1.22028 0.88000 0.94261 0.94647 0.90910 0.91526 0.92302 0.93024 0.92881 0.90242 0.91657 0.92407 0.86145 0.87551 0.86498 0.89349 0.91882 0.88564 0.92814 0.90838 0.87639 0.91030 0.92752 0.88608 0.91647 0.91196 0.91343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.00 9.91 71.98 0.71 -3.29 16 2 C -0.12 -4.63 6.26 30.59 0.19 -4.44 16 3 C 0.09 3.86 4.22 86.38 0.36 4.23 16 4 N -0.45 -21.48 2.18 -635.53 -1.39 -22.87 16 5 C -0.42 -21.63 7.92 84.04 0.67 -20.96 16 6 H 0.07 4.10 5.43 -2.91 -0.02 4.08 16 7 C 0.00 -0.26 5.35 84.93 0.45 0.20 16 8 N -0.89 -50.54 13.69 21.66 0.30 -50.24 16 9 Si 1.08 47.97 25.22 68.60 1.73 49.70 16 10 H -0.25 -9.97 6.70 99.48 0.67 -9.31 16 11 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 12 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 13 C 0.46 20.63 6.66 87.66 0.58 21.21 16 14 O -0.59 -27.24 15.23 -3.06 -0.05 -27.28 16 15 C 0.11 4.41 0.95 -10.35 -0.01 4.40 16 16 F -0.18 -8.06 15.35 44.97 0.69 -7.37 16 17 C -0.13 -3.72 6.03 31.99 0.19 -3.53 16 18 C 0.11 2.75 6.92 86.85 0.60 3.35 16 19 N -0.61 -20.26 3.33 -942.10 -3.13 -23.39 16 20 C 0.67 22.75 7.93 129.79 1.03 23.78 16 21 O -0.59 -23.48 12.21 19.81 0.24 -23.23 16 22 O -0.36 -9.75 9.42 -55.51 -0.52 -10.27 16 23 C 0.12 2.61 1.13 -10.80 -0.01 2.60 16 24 C -0.18 -4.04 8.37 71.98 0.60 -3.44 16 25 C -0.13 -1.74 8.85 71.98 0.64 -1.10 16 26 C -0.18 -3.90 8.37 71.98 0.60 -3.29 16 27 C 0.13 5.28 5.44 86.73 0.47 5.75 16 28 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.06 1.61 8.14 -2.39 -0.02 1.60 16 31 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 32 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.08 3.24 7.36 -2.39 -0.02 3.22 16 34 H 0.07 2.77 3.08 -2.39 -0.01 2.77 16 35 H 0.27 15.22 8.73 -92.71 -0.81 14.41 16 36 H 0.12 3.05 8.14 -2.39 -0.02 3.03 16 37 H 0.11 3.18 7.33 -2.39 -0.02 3.16 16 38 H 0.12 2.34 8.04 -2.39 -0.02 2.32 16 39 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.05 1.61 5.88 -2.39 -0.01 1.59 16 43 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.05 1.58 5.88 -2.39 -0.01 1.57 16 47 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 48 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 49 H 0.07 2.93 7.81 -2.38 -0.02 2.91 16 50 H 0.07 3.03 6.84 -2.39 -0.02 3.01 16 Total: -1.00 -66.39 392.22 5.82 -60.57 By element: Atomic # 1 Polarization: 28.06 SS G_CDS: 0.86 Total: 28.92 kcal Atomic # 6 Polarization: 18.38 SS G_CDS: 7.09 Total: 25.47 kcal Atomic # 7 Polarization: -92.28 SS G_CDS: -4.22 Total: -96.50 kcal Atomic # 8 Polarization: -60.46 SS G_CDS: -0.33 Total: -60.79 kcal Atomic # 9 Polarization: -8.06 SS G_CDS: 0.69 Total: -7.37 kcal Atomic # 14 Polarization: 47.97 SS G_CDS: 1.73 Total: 49.70 kcal Total: -66.39 5.82 -60.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000365766334.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.949 kcal (2) G-P(sol) polarization free energy of solvation -66.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds