Wall clock time and date at job start Wed Apr 1 2020 03:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47067 * 2 1 4 4 N 1.46500 * 109.46538 * 120.00288 * 2 1 3 5 5 C 1.46503 * 119.99857 * 294.35863 * 4 2 1 6 6 C 1.50704 * 109.47098 * 270.00249 * 5 4 2 7 7 H 1.07998 * 120.00330 * 0.02562 * 6 5 4 8 8 C 1.37874 * 119.99767 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00404 * 0.02562 * 8 6 5 10 10 Si 1.86807 * 120.00004 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.46857 * 90.00134 * 10 8 6 12 12 H 1.48495 * 109.46966 * 210.00030 * 10 8 6 13 13 H 1.48498 * 109.46968 * 330.00064 * 10 8 6 14 14 C 1.34778 * 120.00124 * 114.36873 * 4 2 1 15 15 O 1.21280 * 120.00063 * 184.59369 * 14 4 2 16 16 C 1.50696 * 120.00026 * 4.85830 * 14 4 2 17 17 C 1.50701 * 109.59906 * 53.49862 * 16 14 4 18 18 C 1.38243 * 119.99700 * 232.11119 * 17 16 14 19 19 C 1.38241 * 119.99852 * 179.74328 * 18 17 16 20 20 C 1.38237 * 119.99507 * 0.55825 * 19 18 17 21 21 C 1.38236 * 120.00573 * 359.69648 * 20 19 18 22 22 C 1.38234 * 120.00327 * 52.38769 * 17 16 14 23 23 C 1.53351 * 109.60476 * 293.17681 * 16 14 4 24 24 C 1.53392 * 108.24741 * 307.59704 * 23 16 14 25 25 C 1.50174 * 109.99119 * 311.23354 * 24 23 16 26 26 O 1.21276 * 118.24723 * 197.57185 * 25 24 23 27 27 N 1.33363 * 123.50826 * 17.54138 * 25 24 23 28 28 C 1.45756 * 124.10392 * 357.80461 * 27 25 24 29 29 H 1.08997 * 109.47462 * 305.17989 * 1 2 3 30 30 H 1.09004 * 109.46797 * 65.17848 * 1 2 3 31 31 H 1.08995 * 109.47380 * 185.17698 * 1 2 3 32 32 H 1.09001 * 109.46986 * 239.99800 * 2 1 3 33 33 H 1.09004 * 109.47138 * 179.97438 * 3 2 1 34 34 H 1.08992 * 109.47349 * 299.99950 * 3 2 1 35 35 H 1.09001 * 109.47381 * 60.00042 * 3 2 1 36 36 H 1.09002 * 109.47225 * 30.00551 * 5 4 2 37 37 H 1.09004 * 109.47233 * 150.00783 * 5 4 2 38 38 H 0.97001 * 120.00442 * 179.97438 * 9 8 6 39 39 H 1.07993 * 120.00029 * 0.02562 * 18 17 16 40 40 H 1.07991 * 119.99974 * 180.27616 * 19 18 17 41 41 H 1.08004 * 119.99820 * 179.72827 * 20 19 18 42 42 H 1.07995 * 120.00368 * 180.02562 * 21 20 19 43 43 H 1.07997 * 119.99601 * 0.02562 * 22 17 16 44 44 H 1.08999 * 109.67325 * 67.50711 * 23 16 14 45 45 H 1.09003 * 109.67123 * 188.04152 * 23 16 14 46 46 H 1.08996 * 109.38129 * 191.05476 * 24 23 16 47 47 H 1.09000 * 109.25356 * 71.32639 * 24 23 16 48 48 H 0.96999 * 117.94705 * 177.77953 * 27 25 24 49 49 H 1.08997 * 109.30050 * 258.73936 * 28 27 25 50 50 H 1.08998 * 109.13331 * 139.25454 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6907 1.1962 5 6 1.7689 -0.1223 2.5232 6 6 2.9038 0.7959 2.8977 7 1 3.7281 0.9418 2.2154 8 6 2.8892 1.4504 4.1111 9 7 1.8853 1.2732 4.9419 10 14 4.2956 2.5891 4.5751 11 1 3.9916 3.9661 4.1098 12 1 4.4647 2.5910 6.0504 13 1 5.5483 2.1151 3.9339 14 6 2.6968 -1.8489 1.0758 15 8 3.0284 -2.4633 2.0675 16 6 3.0488 -2.3774 -0.2908 17 6 3.7755 -1.3135 -1.0725 18 6 3.3402 -0.9670 -2.3381 19 6 4.0035 0.0127 -3.0531 20 6 5.1091 0.6377 -2.5071 21 6 5.5475 0.2876 -1.2437 22 6 4.8807 -0.6880 -0.5265 23 6 1.7681 -2.7771 -1.0335 24 6 0.9636 -3.7205 -0.1303 25 6 1.8559 -4.8030 0.4056 26 8 1.3381 -5.8005 0.8612 27 7 3.1874 -4.7263 0.4068 28 6 3.9422 -3.6105 -0.1497 29 1 -0.3634 0.5921 0.8399 30 1 -0.3633 0.4314 -0.9328 31 1 -0.3634 -1.0234 0.0927 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 0.8358 0.4409 2.5078 37 1 1.6958 -0.9267 3.2552 38 1 1.8752 1.7334 5.7957 39 1 2.4792 -1.4585 -2.7663 40 1 3.6608 0.2865 -4.0399 41 1 5.6300 1.4001 -3.0674 42 1 6.4110 0.7762 -0.8171 43 1 5.2237 -0.9622 0.4602 44 1 1.1805 -1.8867 -1.2571 45 1 2.0261 -3.2894 -1.9604 46 1 0.1547 -4.1701 -0.7061 47 1 0.5447 -3.1525 0.7002 48 1 3.6845 -5.4588 0.8032 49 1 4.3281 -3.8899 -1.1300 50 1 4.7759 -3.3775 0.5127 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565181208.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:39 Heat of formation + Delta-G solvation = -33.602293 kcal Electronic energy + Delta-G solvation = -33422.791415 eV Core-core repulsion = 29415.224919 eV Total energy + Delta-G solvation = -4007.566495 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.55280 -39.27626 -38.38684 -36.36696 -35.79142 -33.50883 -32.69747 -31.74792 -30.97762 -30.73542 -28.44019 -27.45749 -26.67566 -24.92025 -24.12428 -22.83662 -22.17537 -21.71097 -20.92119 -19.62994 -17.78920 -17.72516 -16.57656 -16.46770 -16.26558 -15.93994 -15.63508 -15.18506 -14.78276 -14.57561 -14.49404 -14.35949 -13.76780 -13.63089 -13.52238 -13.36513 -13.28705 -13.17921 -12.71154 -12.37417 -12.30247 -12.17876 -11.83916 -11.64322 -11.61452 -11.47676 -11.34092 -11.18061 -11.00668 -10.91266 -10.82252 -10.76078 -10.57473 -10.36327 -10.03838 -9.59832 -9.55176 -9.18803 -8.93247 -8.83997 -8.44155 -8.42984 -7.66655 -6.04993 -4.08439 1.29692 1.41999 2.86273 3.20496 3.26828 3.34490 3.36812 3.49326 3.72998 3.80287 4.35209 4.41556 4.55944 4.57126 4.75614 4.91018 4.97808 4.99123 5.08291 5.20756 5.28866 5.29556 5.32182 5.44636 5.50197 5.55912 5.57526 5.60404 5.68387 5.72070 5.82038 5.91189 5.94067 5.99738 6.05115 6.16947 6.26892 6.38800 6.44299 6.53863 6.57861 6.63787 6.91482 6.97847 6.98846 7.08694 7.45427 7.49354 7.53846 7.91427 8.23283 8.38806 8.41069 8.87163 9.03442 9.55575 11.03150 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009493 B = 0.005655 C = 0.004491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2948.965931 B = 4949.927706 C = 6233.415390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.113 3.887 3 C -0.151 4.151 4 N -0.579 5.579 5 C 0.247 3.753 6 C -0.517 4.517 7 H 0.058 0.942 8 C 0.061 3.939 9 N -0.894 5.894 10 Si 0.892 3.108 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.275 1.275 14 C 0.518 3.482 15 O -0.532 6.532 16 C -0.059 4.059 17 C -0.065 4.065 18 C -0.119 4.119 19 C -0.118 4.118 20 C -0.119 4.119 21 C -0.111 4.111 22 C -0.095 4.095 23 C -0.122 4.122 24 C -0.139 4.139 25 C 0.529 3.471 26 O -0.566 6.566 27 N -0.704 5.704 28 C 0.142 3.858 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.097 0.903 33 H 0.057 0.943 34 H 0.044 0.956 35 H 0.076 0.924 36 H 0.033 0.967 37 H 0.041 0.959 38 H 0.262 0.738 39 H 0.127 0.873 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.121 0.879 43 H 0.124 0.876 44 H 0.095 0.905 45 H 0.082 0.918 46 H 0.104 0.896 47 H 0.103 0.897 48 H 0.400 0.600 49 H 0.071 0.929 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.791 -2.682 -19.452 19.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.009 3.991 3 C -0.209 4.209 4 N -0.310 5.310 5 C 0.128 3.872 6 C -0.555 4.555 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.533 5.533 10 Si 0.720 3.280 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.200 1.200 14 C 0.303 3.697 15 O -0.409 6.409 16 C -0.063 4.063 17 C -0.066 4.066 18 C -0.137 4.137 19 C -0.136 4.136 20 C -0.137 4.137 21 C -0.129 4.129 22 C -0.113 4.113 23 C -0.160 4.160 24 C -0.179 4.179 25 C 0.316 3.684 26 O -0.446 6.446 27 N -0.354 5.354 28 C 0.017 3.983 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.114 0.886 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.095 0.905 36 H 0.050 0.950 37 H 0.059 0.941 38 H 0.072 0.928 39 H 0.144 0.856 40 H 0.139 0.861 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.142 0.858 44 H 0.114 0.886 45 H 0.101 0.899 46 H 0.122 0.878 47 H 0.121 0.879 48 H 0.235 0.765 49 H 0.089 0.911 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.482 -3.253 -18.570 19.016 hybrid contribution 1.039 0.824 0.637 1.471 sum 3.521 -2.429 -17.933 18.436 Atomic orbital electron populations 1.22253 0.96086 1.01927 1.02223 1.21547 0.93613 0.94844 0.89110 1.22053 1.01752 0.95344 1.01724 1.48194 1.53031 1.20927 1.08862 1.19242 0.96592 0.94031 0.77370 1.21390 1.06340 1.25681 1.02132 0.92358 1.24912 0.95969 0.97022 0.96187 1.69927 1.30808 1.43062 1.09527 0.86588 0.82727 0.80928 0.77719 1.20719 1.21217 1.19996 1.19724 0.79342 0.81696 0.88918 1.90714 1.53758 1.57889 1.38514 1.20186 0.96272 0.94407 0.95435 1.19263 0.95886 0.97023 0.94400 1.21045 1.00337 0.98367 0.93921 1.21034 0.96043 0.96744 0.99800 1.21133 0.97019 0.99802 0.95749 1.21122 1.00002 0.97146 0.94606 1.21066 0.94725 0.95831 0.99723 1.22166 0.94809 1.00727 0.98284 1.21733 0.98488 0.96212 1.01470 1.19928 0.82740 0.87754 0.77942 1.90722 1.73335 1.32423 1.48086 1.45158 1.06439 1.22969 1.60866 1.21140 0.93848 0.84358 0.98952 0.91513 0.92271 0.92832 0.88580 0.92387 0.93665 0.90521 0.94955 0.94088 0.92801 0.85565 0.86124 0.86321 0.86053 0.85790 0.88641 0.89928 0.87812 0.87863 0.76462 0.91058 0.89640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 8.58 37.16 0.32 -1.98 16 2 C 0.11 1.73 1.81 -67.93 -0.12 1.61 16 3 C -0.15 -2.45 8.34 37.16 0.31 -2.14 16 4 N -0.58 -11.25 2.38 -167.47 -0.40 -11.64 16 5 C 0.25 6.11 4.48 -5.19 -0.02 6.09 16 6 C -0.52 -13.74 7.85 -34.44 -0.27 -14.01 16 7 H 0.06 1.54 7.52 -52.49 -0.39 1.15 16 8 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 9 N -0.89 -26.05 13.29 55.43 0.74 -25.31 16 10 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 14 C 0.52 9.81 4.12 -10.99 -0.05 9.76 16 15 O -0.53 -12.43 14.76 5.56 0.08 -12.35 16 16 C -0.06 -0.80 0.35 -156.67 -0.05 -0.86 16 17 C -0.06 -0.80 2.98 -104.62 -0.31 -1.11 16 18 C -0.12 -1.19 7.47 -39.58 -0.30 -1.48 16 19 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 20 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 21 C -0.11 -1.31 10.05 -39.58 -0.40 -1.71 16 22 C -0.10 -1.30 8.62 -39.58 -0.34 -1.64 16 23 C -0.12 -1.37 3.35 -26.35 -0.09 -1.46 16 24 C -0.14 -1.90 5.51 -27.93 -0.15 -2.05 16 25 C 0.53 8.71 7.22 -11.87 -0.09 8.62 16 26 O -0.57 -11.36 17.78 5.56 0.10 -11.26 16 27 N -0.70 -10.08 4.90 -61.39 -0.30 -10.38 16 28 C 0.14 1.80 5.23 -4.48 -0.02 1.78 16 29 H 0.07 1.06 7.08 -51.93 -0.37 0.69 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.70 7.81 -51.93 -0.41 0.30 16 32 H 0.10 1.24 1.60 -51.93 -0.08 1.16 16 33 H 0.06 1.01 7.55 -51.93 -0.39 0.62 16 34 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.08 1.48 6.94 -51.93 -0.36 1.12 16 36 H 0.03 0.83 6.81 -51.93 -0.35 0.47 16 37 H 0.04 1.19 7.36 -51.93 -0.38 0.80 16 38 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 39 H 0.13 1.00 5.99 -52.49 -0.31 0.68 16 40 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 41 H 0.12 0.95 8.06 -52.48 -0.42 0.52 16 42 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 43 H 0.12 1.95 7.85 -52.49 -0.41 1.54 16 44 H 0.10 0.99 4.11 -51.93 -0.21 0.77 16 45 H 0.08 0.71 7.65 -51.93 -0.40 0.32 16 46 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 47 H 0.10 1.64 7.40 -51.93 -0.38 1.26 16 48 H 0.40 5.32 8.80 -40.82 -0.36 4.97 16 49 H 0.07 0.70 8.11 -51.93 -0.42 0.28 16 50 H 0.09 1.16 7.90 -51.93 -0.41 0.74 16 LS Contribution 382.85 15.07 5.77 5.77 Total: -1.00 -34.10 382.85 -8.83 -42.93 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -7.32 Total: 8.04 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: -2.48 Total: -2.11 kcal Atomic # 7 Polarization: -47.38 SS G_CDS: 0.04 Total: -47.34 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: 0.18 Total: -23.61 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.10 -8.83 -42.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565181208.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.326 kcal (2) G-P(sol) polarization free energy of solvation -34.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds