Wall clock time and date at job start Wed Apr 1 2020 03:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47067 * 2 1 4 4 N 1.46500 * 109.46538 * 120.00288 * 2 1 3 5 5 C 1.46503 * 119.99857 * 294.35863 * 4 2 1 6 6 C 1.50704 * 109.47098 * 270.00249 * 5 4 2 7 7 H 1.07998 * 120.00330 * 0.02562 * 6 5 4 8 8 C 1.37874 * 119.99767 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00404 * 0.02562 * 8 6 5 10 10 Si 1.86807 * 120.00004 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.46857 * 90.00134 * 10 8 6 12 12 H 1.48495 * 109.46966 * 210.00030 * 10 8 6 13 13 H 1.48498 * 109.46968 * 330.00064 * 10 8 6 14 14 C 1.34778 * 120.00124 * 114.36873 * 4 2 1 15 15 O 1.21280 * 120.00063 * 184.59369 * 14 4 2 16 16 C 1.50696 * 120.00026 * 4.85830 * 14 4 2 17 17 C 1.50701 * 109.59906 * 53.49862 * 16 14 4 18 18 C 1.38243 * 119.99700 * 232.11119 * 17 16 14 19 19 C 1.38241 * 119.99852 * 179.74328 * 18 17 16 20 20 C 1.38237 * 119.99507 * 0.55825 * 19 18 17 21 21 C 1.38236 * 120.00573 * 359.69648 * 20 19 18 22 22 C 1.38234 * 120.00327 * 52.38769 * 17 16 14 23 23 C 1.53351 * 109.60476 * 293.17681 * 16 14 4 24 24 C 1.53392 * 108.24741 * 307.59704 * 23 16 14 25 25 C 1.50174 * 109.99119 * 311.23354 * 24 23 16 26 26 O 1.21276 * 118.24723 * 197.57185 * 25 24 23 27 27 N 1.33363 * 123.50826 * 17.54138 * 25 24 23 28 28 C 1.45756 * 124.10392 * 357.80461 * 27 25 24 29 29 H 1.08997 * 109.47462 * 305.17989 * 1 2 3 30 30 H 1.09004 * 109.46797 * 65.17848 * 1 2 3 31 31 H 1.08995 * 109.47380 * 185.17698 * 1 2 3 32 32 H 1.09001 * 109.46986 * 239.99800 * 2 1 3 33 33 H 1.09004 * 109.47138 * 179.97438 * 3 2 1 34 34 H 1.08992 * 109.47349 * 299.99950 * 3 2 1 35 35 H 1.09001 * 109.47381 * 60.00042 * 3 2 1 36 36 H 1.09002 * 109.47225 * 30.00551 * 5 4 2 37 37 H 1.09004 * 109.47233 * 150.00783 * 5 4 2 38 38 H 0.97001 * 120.00442 * 179.97438 * 9 8 6 39 39 H 1.07993 * 120.00029 * 0.02562 * 18 17 16 40 40 H 1.07991 * 119.99974 * 180.27616 * 19 18 17 41 41 H 1.08004 * 119.99820 * 179.72827 * 20 19 18 42 42 H 1.07995 * 120.00368 * 180.02562 * 21 20 19 43 43 H 1.07997 * 119.99601 * 0.02562 * 22 17 16 44 44 H 1.08999 * 109.67325 * 67.50711 * 23 16 14 45 45 H 1.09003 * 109.67123 * 188.04152 * 23 16 14 46 46 H 1.08996 * 109.38129 * 191.05476 * 24 23 16 47 47 H 1.09000 * 109.25356 * 71.32639 * 24 23 16 48 48 H 0.96999 * 117.94705 * 177.77953 * 27 25 24 49 49 H 1.08997 * 109.30050 * 258.73936 * 28 27 25 50 50 H 1.08998 * 109.13331 * 139.25454 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6907 1.1962 5 6 1.7689 -0.1223 2.5232 6 6 2.9038 0.7959 2.8977 7 1 3.7281 0.9418 2.2154 8 6 2.8892 1.4504 4.1111 9 7 1.8853 1.2732 4.9419 10 14 4.2956 2.5891 4.5751 11 1 3.9916 3.9661 4.1098 12 1 4.4647 2.5910 6.0504 13 1 5.5483 2.1151 3.9339 14 6 2.6968 -1.8489 1.0758 15 8 3.0284 -2.4633 2.0675 16 6 3.0488 -2.3774 -0.2908 17 6 3.7755 -1.3135 -1.0725 18 6 3.3402 -0.9670 -2.3381 19 6 4.0035 0.0127 -3.0531 20 6 5.1091 0.6377 -2.5071 21 6 5.5475 0.2876 -1.2437 22 6 4.8807 -0.6880 -0.5265 23 6 1.7681 -2.7771 -1.0335 24 6 0.9636 -3.7205 -0.1303 25 6 1.8559 -4.8030 0.4056 26 8 1.3381 -5.8005 0.8612 27 7 3.1874 -4.7263 0.4068 28 6 3.9422 -3.6105 -0.1497 29 1 -0.3634 0.5921 0.8399 30 1 -0.3633 0.4314 -0.9328 31 1 -0.3634 -1.0234 0.0927 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 0.8358 0.4409 2.5078 37 1 1.6958 -0.9267 3.2552 38 1 1.8752 1.7334 5.7957 39 1 2.4792 -1.4585 -2.7663 40 1 3.6608 0.2865 -4.0399 41 1 5.6300 1.4001 -3.0674 42 1 6.4110 0.7762 -0.8171 43 1 5.2237 -0.9622 0.4602 44 1 1.1805 -1.8867 -1.2571 45 1 2.0261 -3.2894 -1.9604 46 1 0.1547 -4.1701 -0.7061 47 1 0.5447 -3.1525 0.7002 48 1 3.6845 -5.4588 0.8032 49 1 4.3281 -3.8899 -1.1300 50 1 4.7759 -3.3775 0.5127 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565181208.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:38 Heat of formation + Delta-G solvation = -56.657061 kcal Electronic energy + Delta-G solvation = -33423.791144 eV Core-core repulsion = 29415.224919 eV Total energy + Delta-G solvation = -4008.566225 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.74341 -40.48739 -39.59382 -37.79182 -37.13391 -35.06498 -34.34857 -32.75355 -32.41362 -31.68280 -29.68811 -29.14172 -27.92328 -26.10944 -25.47788 -24.39400 -23.20633 -22.77413 -22.07015 -20.98018 -19.14141 -18.84544 -18.55443 -17.73830 -17.41594 -17.11654 -16.85320 -16.79250 -16.26156 -15.94087 -15.57494 -15.43683 -15.10458 -14.83714 -14.74430 -14.58845 -14.41334 -14.22527 -14.14744 -13.74555 -13.57794 -13.40298 -13.29387 -13.19241 -12.81359 -12.79874 -12.74332 -12.56117 -12.41747 -12.36129 -12.20024 -12.10282 -11.88428 -11.69869 -11.57135 -11.47818 -10.84229 -10.62753 -10.61550 -10.10000 -9.70033 -9.44865 -9.36117 -8.19908 -6.31506 0.44129 0.58677 1.32247 1.34930 1.44156 1.58749 1.79437 2.25956 2.35808 2.42089 2.88624 3.09892 3.29492 3.48863 3.53668 3.65133 3.79024 4.03807 4.12027 4.17271 4.23638 4.29547 4.36523 4.39975 4.43174 4.53938 4.57750 4.70625 4.71795 4.76934 4.82517 4.86276 4.91187 4.97412 5.03443 5.07784 5.11652 5.15080 5.22827 5.25616 5.47491 5.60034 5.64138 5.65672 5.70164 5.73827 5.75618 5.90887 6.11083 6.17655 6.30791 6.74852 6.86384 7.15967 7.31291 7.50510 8.87276 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009493 B = 0.005655 C = 0.004491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2948.965931 B = 4949.927706 C = 6233.415390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.109 3.891 3 C -0.145 4.145 4 N -0.582 5.582 5 C 0.267 3.733 6 C -0.516 4.516 7 H 0.055 0.945 8 C 0.006 3.994 9 N -0.932 5.932 10 Si 0.957 3.043 11 H -0.264 1.264 12 H -0.286 1.286 13 H -0.272 1.272 14 C 0.512 3.488 15 O -0.591 6.591 16 C -0.048 4.048 17 C -0.076 4.076 18 C -0.112 4.112 19 C -0.107 4.107 20 C -0.114 4.114 21 C -0.125 4.125 22 C -0.120 4.120 23 C -0.116 4.116 24 C -0.137 4.137 25 C 0.518 3.482 26 O -0.613 6.613 27 N -0.700 5.700 28 C 0.140 3.860 29 H 0.036 0.964 30 H 0.102 0.898 31 H 0.059 0.941 32 H 0.132 0.868 33 H 0.043 0.957 34 H 0.085 0.915 35 H 0.037 0.963 36 H 0.019 0.981 37 H -0.014 1.014 38 H 0.263 0.737 39 H 0.162 0.838 40 H 0.159 0.841 41 H 0.143 0.857 42 H 0.119 0.881 43 H 0.083 0.917 44 H 0.112 0.888 45 H 0.130 0.870 46 H 0.133 0.867 47 H 0.073 0.927 48 H 0.401 0.599 49 H 0.116 0.884 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.994 -1.415 -24.896 25.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.007 3.993 3 C -0.203 4.203 4 N -0.312 5.312 5 C 0.146 3.854 6 C -0.555 4.555 7 H 0.073 0.927 8 C -0.193 4.193 9 N -0.572 5.572 10 Si 0.782 3.218 11 H -0.190 1.190 12 H -0.212 1.212 13 H -0.197 1.197 14 C 0.300 3.700 15 O -0.472 6.472 16 C -0.052 4.052 17 C -0.077 4.077 18 C -0.130 4.130 19 C -0.125 4.125 20 C -0.132 4.132 21 C -0.143 4.143 22 C -0.138 4.138 23 C -0.153 4.153 24 C -0.177 4.177 25 C 0.307 3.693 26 O -0.497 6.497 27 N -0.348 5.348 28 C 0.015 3.985 29 H 0.055 0.945 30 H 0.121 0.879 31 H 0.078 0.922 32 H 0.149 0.851 33 H 0.062 0.938 34 H 0.103 0.897 35 H 0.056 0.944 36 H 0.037 0.963 37 H 0.004 0.996 38 H 0.072 0.928 39 H 0.179 0.821 40 H 0.177 0.823 41 H 0.161 0.839 42 H 0.137 0.863 43 H 0.102 0.898 44 H 0.130 0.870 45 H 0.148 0.852 46 H 0.151 0.849 47 H 0.091 0.909 48 H 0.236 0.764 49 H 0.134 0.866 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.708 -1.948 -24.074 24.304 hybrid contribution 1.045 0.448 2.330 2.593 sum 3.754 -1.500 -21.744 22.116 Atomic orbital electron populations 1.22272 0.94613 1.02219 1.03255 1.21935 0.94778 0.94334 0.88238 1.21981 1.00755 0.95827 1.01715 1.48148 1.53372 1.21520 1.08134 1.18574 0.95607 0.91688 0.79535 1.21598 1.06410 1.25378 1.02082 0.92651 1.25778 0.98448 0.98760 0.96267 1.70062 1.32813 1.44383 1.09973 0.85574 0.79548 0.79513 0.77189 1.18954 1.21225 1.19653 1.20758 0.77668 0.80732 0.90887 1.90677 1.55711 1.59505 1.41347 1.20101 0.98110 0.94916 0.92083 1.19146 0.95784 0.97117 0.95655 1.21398 1.01029 0.98201 0.92334 1.21482 0.94773 0.95250 1.00947 1.21469 0.97259 0.99858 0.94629 1.21219 1.00261 0.97040 0.95802 1.20892 0.96463 0.97773 0.98682 1.22309 0.92891 1.01191 0.98901 1.21751 0.99057 0.95601 1.01257 1.20519 0.83416 0.87851 0.77533 1.90690 1.74231 1.34416 1.50327 1.45243 1.06215 1.23310 1.60059 1.21353 0.92941 0.83624 1.00541 0.94515 0.87904 0.92243 0.85142 0.93834 0.89674 0.94427 0.96278 0.99572 0.92784 0.82053 0.82308 0.83883 0.86255 0.89832 0.86961 0.85221 0.84864 0.90864 0.76361 0.86591 0.91486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.24 8.58 71.98 0.62 -3.62 16 2 C 0.11 3.18 1.81 44.99 0.08 3.26 16 3 C -0.14 -4.51 8.34 71.98 0.60 -3.91 16 4 N -0.58 -23.47 2.38 -802.13 -1.91 -25.38 16 5 C 0.27 14.27 4.48 85.63 0.38 14.65 16 6 C -0.52 -29.02 7.85 25.60 0.20 -28.82 16 7 H 0.06 3.08 7.52 -2.91 -0.02 3.06 16 8 C 0.01 0.32 5.46 84.65 0.46 0.79 16 9 N -0.93 -57.10 13.29 21.45 0.28 -56.82 16 10 Si 0.96 45.17 29.54 68.60 2.03 47.20 16 11 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 12 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 13 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 14 C 0.51 20.15 4.12 87.66 0.36 20.51 16 15 O -0.59 -29.93 14.76 -3.03 -0.04 -29.98 16 16 C -0.05 -1.25 0.35 -53.58 -0.02 -1.26 16 17 C -0.08 -1.68 2.98 -19.86 -0.06 -1.74 16 18 C -0.11 -1.57 7.47 22.27 0.17 -1.41 16 19 C -0.11 -1.30 10.05 22.27 0.22 -1.07 16 20 C -0.11 -1.79 10.05 22.27 0.22 -1.56 16 21 C -0.13 -2.78 10.05 22.27 0.22 -2.55 16 22 C -0.12 -3.23 8.62 22.27 0.19 -3.04 16 23 C -0.12 -2.13 3.35 30.84 0.10 -2.03 16 24 C -0.14 -3.53 5.51 29.81 0.16 -3.37 16 25 C 0.52 17.13 7.22 87.71 0.63 17.76 16 26 O -0.61 -25.33 17.78 -3.02 -0.05 -25.38 16 27 N -0.70 -20.13 4.90 -467.31 -2.29 -22.42 16 28 C 0.14 3.42 5.23 86.49 0.45 3.87 16 29 H 0.04 1.16 7.08 -2.39 -0.02 1.14 16 30 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.06 1.45 7.81 -2.39 -0.02 1.43 16 32 H 0.13 2.87 1.60 -2.39 0.00 2.87 16 33 H 0.04 1.47 7.55 -2.38 -0.02 1.45 16 34 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.04 1.46 6.94 -2.39 -0.02 1.44 16 36 H 0.02 1.06 6.81 -2.39 -0.02 1.04 16 37 H -0.01 -0.88 7.36 -2.39 -0.02 -0.90 16 38 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 39 H 0.16 1.18 5.99 -2.91 -0.02 1.16 16 40 H 0.16 0.86 8.06 -2.92 -0.02 0.84 16 41 H 0.14 1.55 8.06 -2.91 -0.02 1.52 16 42 H 0.12 2.55 8.06 -2.91 -0.02 2.53 16 43 H 0.08 2.86 7.85 -2.91 -0.02 2.84 16 44 H 0.11 1.71 4.11 -2.39 -0.01 1.70 16 45 H 0.13 1.32 7.65 -2.39 -0.02 1.31 16 46 H 0.13 2.61 8.14 -2.39 -0.02 2.59 16 47 H 0.07 2.37 7.40 -2.39 -0.02 2.35 16 48 H 0.40 11.07 8.80 -92.71 -0.82 10.25 16 49 H 0.12 1.87 8.11 -2.39 -0.02 1.85 16 50 H 0.07 1.90 7.90 -2.39 -0.02 1.88 16 Total: -1.00 -84.64 382.85 3.18 -81.45 By element: Atomic # 1 Polarization: 24.72 SS G_CDS: 0.15 Total: 24.87 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: 5.01 Total: 6.45 kcal Atomic # 7 Polarization: -100.71 SS G_CDS: -3.91 Total: -104.61 kcal Atomic # 8 Polarization: -55.26 SS G_CDS: -0.10 Total: -55.36 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -84.64 3.18 -81.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565181208.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.795 kcal (2) G-P(sol) polarization free energy of solvation -84.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds