Wall clock time and date at job start Wed Apr 1 2020 03:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50701 * 119.99587 * 2 1 4 4 N 1.46504 * 109.46708 * 125.00112 * 3 2 1 5 5 C 1.46508 * 119.99880 * 276.23552 * 4 3 2 6 6 C 1.50698 * 109.47182 * 270.00213 * 5 4 3 7 7 H 1.08001 * 119.99905 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99889 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99680 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99986 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47153 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47317 * 119.99709 * 10 8 6 13 13 H 1.48499 * 109.47381 * 240.00010 * 10 8 6 14 14 C 1.34777 * 119.99961 * 96.23874 * 4 3 2 15 15 O 1.21283 * 119.99611 * 185.97677 * 14 4 3 16 16 C 1.50701 * 119.99923 * 5.98022 * 14 4 3 17 17 O 1.42896 * 110.28625 * 47.97159 * 16 14 4 18 18 C 1.54261 * 110.32160 * 170.09766 * 16 14 4 19 19 C 1.54383 * 105.05804 * 118.89534 * 18 16 14 20 20 N 1.48559 * 104.59384 * 23.85062 * 19 18 16 21 21 C 1.46900 * 110.99814 * 200.95638 * 20 19 18 22 22 C 1.50697 * 109.47383 * 305.42427 * 21 20 19 23 23 C 1.38236 * 119.99700 * 269.72029 * 22 21 20 24 24 C 1.38235 * 120.00214 * 179.76547 * 23 22 21 25 25 C 1.38246 * 119.99394 * 0.51155 * 24 23 22 26 26 C 1.38227 * 120.00010 * 359.74726 * 25 24 23 27 27 C 1.38231 * 120.00238 * 90.00102 * 22 21 20 28 28 C 1.48555 * 104.22366 * 320.51694 * 20 19 18 29 29 H 1.07995 * 120.00345 * 0.02562 * 1 2 3 30 30 H 1.08001 * 119.99615 * 179.97438 * 1 2 3 31 31 H 1.07994 * 120.00446 * 180.02562 * 2 1 3 32 32 H 1.09001 * 109.47505 * 5.00323 * 3 2 1 33 33 H 1.08995 * 109.47319 * 244.99670 * 3 2 1 34 34 H 1.08997 * 109.47047 * 30.00605 * 5 4 3 35 35 H 1.08996 * 109.46662 * 150.00146 * 5 4 3 36 36 H 0.97002 * 119.99482 * 179.97438 * 9 8 6 37 37 H 0.96702 * 114.00431 * 65.49249 * 17 16 14 38 38 H 1.09000 * 110.32247 * 237.79055 * 18 16 14 39 39 H 1.09003 * 110.32339 * 0.02562 * 18 16 14 40 40 H 1.09000 * 110.40912 * 142.62929 * 19 18 16 41 41 H 1.09001 * 110.41155 * 265.07250 * 19 18 16 42 42 H 1.09004 * 109.47003 * 65.42103 * 21 20 19 43 43 H 1.09003 * 109.47461 * 185.42117 * 21 20 19 44 44 H 1.07999 * 119.99982 * 0.02562 * 23 22 21 45 45 H 1.07993 * 120.00468 * 180.23739 * 24 23 22 46 46 H 1.08002 * 119.99426 * 179.72543 * 25 24 23 47 47 H 1.08004 * 120.00059 * 179.97438 * 26 25 24 48 48 H 1.08004 * 120.00248 * 359.97438 * 27 22 21 49 49 H 1.09004 * 110.41348 * 280.70158 * 28 20 19 50 50 H 1.09002 * 110.41266 * 158.26118 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5219 1.7361 2.4583 6 6 2.6825 3.2262 2.6162 7 1 3.0952 3.8133 1.8091 8 6 2.3036 3.8397 3.7914 9 7 1.8016 3.1246 4.7743 10 14 2.5033 5.6866 3.9873 11 1 3.0876 6.2558 2.7463 12 1 1.1765 6.3041 4.2387 13 1 3.4054 5.9682 5.1328 14 6 4.2836 0.9848 0.9517 15 8 5.0278 0.9019 1.9058 16 6 4.8010 0.6996 -0.4346 17 8 4.4007 1.7342 -1.3353 18 6 6.3380 0.5698 -0.4166 19 6 6.6248 -0.8682 -0.8996 20 7 5.4256 -1.2429 -1.6925 21 6 5.3037 -2.7025 -1.8047 22 6 6.5816 -3.2718 -2.3650 23 6 6.7329 -3.4169 -3.7313 24 6 7.9069 -3.9346 -4.2457 25 6 8.9256 -4.3171 -3.3929 26 6 8.7721 -4.1770 -2.0263 27 6 7.6001 -3.6544 -1.5123 28 6 4.2884 -0.6709 -0.9269 29 1 -0.5400 0.9352 -0.0004 30 1 -0.5399 -0.9354 -0.0004 31 1 1.8501 -0.9352 -0.0004 32 1 1.3585 2.1317 0.0896 33 1 2.6213 1.4027 -0.9313 34 1 1.4703 1.4705 2.5665 35 1 3.1063 1.2246 3.2230 36 1 1.5354 3.5562 5.6012 37 1 4.7915 2.5973 -1.1417 38 1 6.7871 1.2941 -1.0963 39 1 6.7181 0.7119 0.5950 40 1 7.5164 -0.8880 -1.5263 41 1 6.7423 -1.5388 -0.0483 42 1 5.1179 -3.1284 -0.8187 43 1 4.4748 -2.9480 -2.4686 44 1 5.9355 -3.1219 -4.3973 45 1 8.0266 -4.0444 -5.3133 46 1 9.8411 -4.7257 -3.7945 47 1 9.5678 -4.4762 -1.3601 48 1 7.4803 -3.5449 -0.4445 49 1 4.0402 -1.3106 -0.0799 50 1 3.4208 -0.5421 -1.5741 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571749488.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:48 Heat of formation + Delta-G solvation = -16.261413 kcal Electronic energy + Delta-G solvation = -30876.290686 eV Core-core repulsion = 26869.476148 eV Total energy + Delta-G solvation = -4006.814538 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.55166 -39.47545 -37.75040 -36.00885 -35.65946 -33.20860 -32.66470 -32.03486 -31.11463 -30.03759 -28.95913 -27.34501 -25.83007 -25.29146 -23.38383 -22.81994 -21.98238 -21.15699 -20.77219 -19.88790 -18.84702 -17.44383 -16.97204 -16.57607 -16.32354 -15.74002 -15.50117 -15.33873 -14.91205 -14.74668 -14.60944 -14.45737 -14.22164 -13.88132 -13.65211 -13.59104 -13.23942 -12.97892 -12.74496 -12.62904 -12.24842 -12.12109 -11.89052 -11.71678 -11.52882 -11.35586 -11.30025 -11.13755 -11.06647 -11.04633 -10.90591 -10.84660 -10.61135 -10.40324 -10.20743 -9.63144 -9.14840 -9.10938 -9.05442 -8.70210 -8.51900 -8.46757 -7.70818 -6.07465 -4.12554 1.11289 1.20770 2.50413 3.16043 3.27247 3.34953 3.38572 3.47924 3.81138 4.05319 4.16563 4.41442 4.47639 4.63778 4.65664 4.73343 4.80097 4.91395 5.01824 5.07454 5.22486 5.27089 5.29357 5.33139 5.38317 5.45476 5.45974 5.50864 5.61109 5.68364 5.79223 5.83870 5.86296 5.95492 6.01870 6.12306 6.17219 6.24776 6.30350 6.38691 6.41538 6.66504 6.78096 6.83432 6.86702 6.94628 7.07445 7.41023 7.50015 7.63570 7.89024 8.19787 8.36374 8.82257 8.98739 9.52523 11.00705 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018335 B = 0.002632 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.775993 B =10635.610348 C =11311.301864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.166 4.166 3 C 0.112 3.888 4 N -0.577 5.577 5 C 0.243 3.757 6 C -0.526 4.526 7 H 0.058 0.942 8 C 0.061 3.939 9 N -0.893 5.893 10 Si 0.898 3.102 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.283 1.283 14 C 0.485 3.515 15 O -0.537 6.537 16 C 0.118 3.882 17 O -0.536 6.536 18 C -0.147 4.147 19 C 0.038 3.962 20 N -0.497 5.497 21 C 0.079 3.921 22 C -0.078 4.078 23 C -0.098 4.098 24 C -0.123 4.123 25 C -0.123 4.123 26 C -0.121 4.121 27 C -0.113 4.113 28 C 0.050 3.950 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.080 0.920 33 H 0.116 0.884 34 H 0.033 0.967 35 H 0.042 0.958 36 H 0.263 0.737 37 H 0.383 0.617 38 H 0.082 0.918 39 H 0.100 0.900 40 H 0.083 0.917 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.087 0.913 44 H 0.124 0.876 45 H 0.120 0.880 46 H 0.119 0.881 47 H 0.120 0.880 48 H 0.120 0.880 49 H 0.059 0.941 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.131 -13.429 -17.590 23.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.186 4.186 3 C -0.011 4.011 4 N -0.307 5.307 5 C 0.124 3.876 6 C -0.565 4.565 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.532 5.532 10 Si 0.726 3.274 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.209 1.209 14 C 0.269 3.731 15 O -0.415 6.415 16 C 0.073 3.927 17 O -0.343 6.343 18 C -0.186 4.186 19 C -0.089 4.089 20 N -0.221 5.221 21 C -0.049 4.049 22 C -0.078 4.078 23 C -0.117 4.117 24 C -0.141 4.141 25 C -0.141 4.141 26 C -0.139 4.139 27 C -0.131 4.131 28 C -0.078 4.078 29 H 0.117 0.883 30 H 0.111 0.889 31 H 0.119 0.881 32 H 0.098 0.902 33 H 0.133 0.867 34 H 0.051 0.949 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.232 0.768 38 H 0.101 0.899 39 H 0.118 0.882 40 H 0.102 0.898 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.105 0.895 44 H 0.142 0.858 45 H 0.138 0.862 46 H 0.137 0.863 47 H 0.139 0.861 48 H 0.138 0.862 49 H 0.077 0.923 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 8.099 -13.718 -17.680 23.799 hybrid contribution 0.210 1.071 1.388 1.766 sum 8.309 -12.647 -16.292 22.236 Atomic orbital electron populations 1.23798 0.95878 1.01636 1.00960 1.23480 0.96377 0.99070 0.99624 1.21143 0.93569 0.94716 0.91649 1.48163 1.07501 1.63159 1.11852 1.19323 0.95227 0.95284 0.77757 1.21442 1.42091 0.92483 1.00469 0.92400 1.24945 0.95070 0.98545 0.95574 1.69950 1.42536 1.35597 1.05142 0.86443 0.77733 0.85063 0.78177 1.19767 1.20933 1.20905 1.20842 0.83144 0.78573 0.90523 1.90654 1.56196 1.52416 1.42225 1.22034 0.94335 0.89325 0.86970 1.86415 1.72366 1.20943 1.54617 1.23019 0.94152 0.97366 1.04030 1.23096 0.94461 0.95515 0.95869 1.65619 1.02347 1.09087 1.45031 1.21274 0.95384 0.88087 1.00139 1.19732 0.95592 0.98715 0.93805 1.21047 0.97783 0.98297 0.94566 1.21154 0.93809 0.99419 0.99699 1.21151 0.98951 1.00327 0.93649 1.21119 0.97567 0.99812 0.95435 1.21139 0.93509 0.98841 0.99647 1.23218 0.95325 0.92137 0.97079 0.88328 0.88941 0.88129 0.90161 0.86706 0.94896 0.93961 0.92755 0.76754 0.89924 0.88206 0.89849 0.93457 0.93517 0.89455 0.85849 0.86153 0.86301 0.86150 0.86239 0.92280 0.87979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.54 14.32 29.01 0.42 -2.12 16 2 C -0.17 -2.49 8.86 -36.03 -0.32 -2.81 16 3 C 0.11 1.90 5.23 -5.19 -0.03 1.88 16 4 N -0.58 -12.08 2.44 -176.43 -0.43 -12.51 16 5 C 0.24 6.35 5.22 -5.19 -0.03 6.32 16 6 C -0.53 -14.72 9.39 -34.44 -0.32 -15.04 16 7 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 8 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 9 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 10 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 11 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 14 C 0.48 9.80 6.59 -10.98 -0.07 9.72 16 15 O -0.54 -12.98 14.86 5.55 0.08 -12.90 16 16 C 0.12 1.80 0.90 -90.39 -0.08 1.72 16 17 O -0.54 -7.52 10.15 -35.23 -0.36 -7.88 16 18 C -0.15 -2.07 6.34 -25.35 -0.16 -2.23 16 19 C 0.04 0.48 4.95 -2.18 -0.01 0.47 16 20 N -0.50 -6.07 5.48 -231.41 -1.27 -7.34 16 21 C 0.08 0.82 5.22 -4.98 -0.03 0.80 16 22 C -0.08 -0.79 4.66 -104.63 -0.49 -1.28 16 23 C -0.10 -0.92 9.70 -39.58 -0.38 -1.31 16 24 C -0.12 -1.04 10.05 -39.58 -0.40 -1.43 16 25 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 26 C -0.12 -1.06 10.05 -39.59 -0.40 -1.46 16 27 C -0.11 -1.10 8.38 -39.58 -0.33 -1.43 16 28 C 0.05 0.68 3.97 -2.19 -0.01 0.67 16 29 H 0.10 1.34 7.84 -52.49 -0.41 0.93 16 30 H 0.09 1.09 8.06 -52.49 -0.42 0.67 16 31 H 0.10 1.41 6.69 -52.49 -0.35 1.06 16 32 H 0.08 1.43 7.77 -51.93 -0.40 1.03 16 33 H 0.12 1.77 4.03 -51.93 -0.21 1.56 16 34 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 35 H 0.04 1.25 7.35 -51.93 -0.38 0.87 16 36 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.38 4.57 9.07 45.56 0.41 4.98 16 38 H 0.08 1.04 7.98 -51.93 -0.41 0.62 16 39 H 0.10 1.61 6.51 -51.93 -0.34 1.27 16 40 H 0.08 0.99 7.74 -51.93 -0.40 0.59 16 41 H 0.05 0.60 7.13 -51.93 -0.37 0.23 16 42 H 0.05 0.49 7.82 -51.93 -0.41 0.08 16 43 H 0.09 0.82 8.08 -51.93 -0.42 0.40 16 44 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 45 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 46 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 47 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 48 H 0.12 1.11 7.39 -52.48 -0.39 0.72 16 49 H 0.06 0.84 7.14 -51.93 -0.37 0.47 16 50 H 0.10 1.32 6.73 -51.93 -0.35 0.97 16 LS Contribution 400.17 15.07 6.03 6.03 Total: -1.00 -32.76 400.17 -10.24 -43.00 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -6.88 Total: 8.02 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: -3.13 Total: -7.32 kcal Atomic # 7 Polarization: -44.64 SS G_CDS: -0.96 Total: -45.60 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.28 Total: -20.78 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.76 -10.24 -43.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571749488.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.741 kcal (2) G-P(sol) polarization free energy of solvation -32.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds