Wall clock time and date at job start Wed Apr 1 2020 03:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50701 * 119.99587 * 2 1 4 4 N 1.46504 * 109.46708 * 125.00112 * 3 2 1 5 5 C 1.46508 * 119.99880 * 276.23552 * 4 3 2 6 6 C 1.50698 * 109.47182 * 270.00213 * 5 4 3 7 7 H 1.08001 * 119.99905 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99889 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99680 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99986 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47153 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47317 * 119.99709 * 10 8 6 13 13 H 1.48499 * 109.47381 * 240.00010 * 10 8 6 14 14 C 1.34777 * 119.99961 * 96.23874 * 4 3 2 15 15 O 1.21283 * 119.99611 * 185.97677 * 14 4 3 16 16 C 1.50701 * 119.99923 * 5.98022 * 14 4 3 17 17 O 1.42896 * 110.28625 * 47.97159 * 16 14 4 18 18 C 1.54261 * 110.32160 * 170.09766 * 16 14 4 19 19 C 1.54383 * 105.05804 * 118.89534 * 18 16 14 20 20 N 1.48559 * 104.59384 * 23.85062 * 19 18 16 21 21 C 1.46900 * 110.99814 * 200.95638 * 20 19 18 22 22 C 1.50697 * 109.47383 * 305.42427 * 21 20 19 23 23 C 1.38236 * 119.99700 * 269.72029 * 22 21 20 24 24 C 1.38235 * 120.00214 * 179.76547 * 23 22 21 25 25 C 1.38246 * 119.99394 * 0.51155 * 24 23 22 26 26 C 1.38227 * 120.00010 * 359.74726 * 25 24 23 27 27 C 1.38231 * 120.00238 * 90.00102 * 22 21 20 28 28 C 1.48555 * 104.22366 * 320.51694 * 20 19 18 29 29 H 1.07995 * 120.00345 * 0.02562 * 1 2 3 30 30 H 1.08001 * 119.99615 * 179.97438 * 1 2 3 31 31 H 1.07994 * 120.00446 * 180.02562 * 2 1 3 32 32 H 1.09001 * 109.47505 * 5.00323 * 3 2 1 33 33 H 1.08995 * 109.47319 * 244.99670 * 3 2 1 34 34 H 1.08997 * 109.47047 * 30.00605 * 5 4 3 35 35 H 1.08996 * 109.46662 * 150.00146 * 5 4 3 36 36 H 0.97002 * 119.99482 * 179.97438 * 9 8 6 37 37 H 0.96702 * 114.00431 * 65.49249 * 17 16 14 38 38 H 1.09000 * 110.32247 * 237.79055 * 18 16 14 39 39 H 1.09003 * 110.32339 * 0.02562 * 18 16 14 40 40 H 1.09000 * 110.40912 * 142.62929 * 19 18 16 41 41 H 1.09001 * 110.41155 * 265.07250 * 19 18 16 42 42 H 1.09004 * 109.47003 * 65.42103 * 21 20 19 43 43 H 1.09003 * 109.47461 * 185.42117 * 21 20 19 44 44 H 1.07999 * 119.99982 * 0.02562 * 23 22 21 45 45 H 1.07993 * 120.00468 * 180.23739 * 24 23 22 46 46 H 1.08002 * 119.99426 * 179.72543 * 25 24 23 47 47 H 1.08004 * 120.00059 * 179.97438 * 26 25 24 48 48 H 1.08004 * 120.00248 * 359.97438 * 27 22 21 49 49 H 1.09004 * 110.41348 * 280.70158 * 28 20 19 50 50 H 1.09002 * 110.41266 * 158.26118 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5219 1.7361 2.4583 6 6 2.6825 3.2262 2.6162 7 1 3.0952 3.8133 1.8091 8 6 2.3036 3.8397 3.7914 9 7 1.8016 3.1246 4.7743 10 14 2.5033 5.6866 3.9873 11 1 3.0876 6.2558 2.7463 12 1 1.1765 6.3041 4.2387 13 1 3.4054 5.9682 5.1328 14 6 4.2836 0.9848 0.9517 15 8 5.0278 0.9019 1.9058 16 6 4.8010 0.6996 -0.4346 17 8 4.4007 1.7342 -1.3353 18 6 6.3380 0.5698 -0.4166 19 6 6.6248 -0.8682 -0.8996 20 7 5.4256 -1.2429 -1.6925 21 6 5.3037 -2.7025 -1.8047 22 6 6.5816 -3.2718 -2.3650 23 6 6.7329 -3.4169 -3.7313 24 6 7.9069 -3.9346 -4.2457 25 6 8.9256 -4.3171 -3.3929 26 6 8.7721 -4.1770 -2.0263 27 6 7.6001 -3.6544 -1.5123 28 6 4.2884 -0.6709 -0.9269 29 1 -0.5400 0.9352 -0.0004 30 1 -0.5399 -0.9354 -0.0004 31 1 1.8501 -0.9352 -0.0004 32 1 1.3585 2.1317 0.0896 33 1 2.6213 1.4027 -0.9313 34 1 1.4703 1.4705 2.5665 35 1 3.1063 1.2246 3.2230 36 1 1.5354 3.5562 5.6012 37 1 4.7915 2.5973 -1.1417 38 1 6.7871 1.2941 -1.0963 39 1 6.7181 0.7119 0.5950 40 1 7.5164 -0.8880 -1.5263 41 1 6.7423 -1.5388 -0.0483 42 1 5.1179 -3.1284 -0.8187 43 1 4.4748 -2.9480 -2.4686 44 1 5.9355 -3.1219 -4.3973 45 1 8.0266 -4.0444 -5.3133 46 1 9.8411 -4.7257 -3.7945 47 1 9.5678 -4.4762 -1.3601 48 1 7.4803 -3.5449 -0.4445 49 1 4.0402 -1.3106 -0.0799 50 1 3.4208 -0.5421 -1.5741 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571749488.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:47 Heat of formation + Delta-G solvation = -38.328507 kcal Electronic energy + Delta-G solvation = -30877.247587 eV Core-core repulsion = 26869.476148 eV Total energy + Delta-G solvation = -4007.771439 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.85142 -40.34481 -38.99270 -37.44824 -36.95022 -35.09901 -33.73529 -33.50759 -31.76649 -30.98463 -30.41579 -29.01343 -27.02433 -26.53094 -25.21396 -23.53662 -22.84440 -22.53801 -21.74169 -21.10192 -20.18799 -18.93239 -18.58548 -17.84563 -17.46229 -17.10965 -16.54970 -16.38303 -16.21856 -16.11332 -16.03736 -15.66578 -15.37165 -15.10682 -14.73613 -14.55289 -14.31233 -14.23613 -14.11602 -13.81410 -13.40938 -13.38007 -13.21027 -13.01936 -12.95778 -12.78316 -12.73513 -12.59862 -12.41086 -12.25113 -12.21305 -12.09738 -11.86556 -11.77941 -11.71509 -11.53508 -10.67379 -10.46964 -10.18826 -9.79494 -9.76679 -9.49956 -9.44980 -8.24726 -6.39781 0.43481 0.54803 1.29166 1.35838 1.37595 1.49237 1.59389 2.26454 2.39819 2.74643 2.94073 3.05309 3.14213 3.43413 3.53105 3.64938 3.83663 3.96951 4.08674 4.13255 4.19902 4.23833 4.29049 4.33879 4.38781 4.47487 4.56725 4.59977 4.66568 4.71958 4.80327 4.80918 4.92206 4.95319 4.98694 5.01998 5.08055 5.13563 5.19379 5.20802 5.49079 5.54933 5.65686 5.67346 5.69550 5.72811 5.73880 5.88056 5.95216 6.02882 6.15480 6.46145 6.67774 6.74105 7.21096 7.36471 8.83053 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018335 B = 0.002632 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.775993 B =10635.610348 C =11311.301864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.186 4.186 3 C 0.115 3.885 4 N -0.581 5.581 5 C 0.261 3.739 6 C -0.541 4.541 7 H 0.057 0.943 8 C 0.007 3.993 9 N -0.929 5.929 10 Si 0.969 3.031 11 H -0.263 1.263 12 H -0.271 1.271 13 H -0.282 1.282 14 C 0.478 3.522 15 O -0.586 6.586 16 C 0.132 3.868 17 O -0.531 6.531 18 C -0.145 4.145 19 C 0.046 3.954 20 N -0.493 5.493 21 C 0.079 3.921 22 C -0.091 4.091 23 C -0.107 4.107 24 C -0.127 4.127 25 C -0.125 4.125 26 C -0.130 4.130 27 C -0.127 4.127 28 C 0.056 3.944 29 H 0.098 0.902 30 H 0.117 0.883 31 H 0.111 0.889 32 H 0.068 0.932 33 H 0.134 0.866 34 H 0.018 0.982 35 H -0.004 1.004 36 H 0.267 0.733 37 H 0.394 0.606 38 H 0.102 0.898 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.041 0.959 42 H 0.042 0.958 43 H 0.101 0.899 44 H 0.132 0.868 45 H 0.141 0.859 46 H 0.141 0.859 47 H 0.135 0.865 48 H 0.116 0.884 49 H 0.049 0.951 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.462 -13.405 -20.263 25.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.205 4.205 3 C -0.007 4.007 4 N -0.310 5.310 5 C 0.140 3.860 6 C -0.579 4.579 7 H 0.075 0.925 8 C -0.192 4.192 9 N -0.569 5.569 10 Si 0.793 3.207 11 H -0.187 1.187 12 H -0.196 1.196 13 H -0.208 1.208 14 C 0.265 3.735 15 O -0.467 6.467 16 C 0.087 3.913 17 O -0.340 6.340 18 C -0.184 4.184 19 C -0.082 4.082 20 N -0.216 5.216 21 C -0.048 4.048 22 C -0.091 4.091 23 C -0.126 4.126 24 C -0.145 4.145 25 C -0.144 4.144 26 C -0.147 4.147 27 C -0.145 4.145 28 C -0.072 4.072 29 H 0.116 0.884 30 H 0.135 0.865 31 H 0.129 0.871 32 H 0.087 0.913 33 H 0.151 0.849 34 H 0.036 0.964 35 H 0.014 0.986 36 H 0.076 0.924 37 H 0.245 0.755 38 H 0.120 0.880 39 H 0.093 0.907 40 H 0.112 0.888 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.119 0.881 44 H 0.150 0.850 45 H 0.159 0.841 46 H 0.159 0.841 47 H 0.152 0.848 48 H 0.134 0.866 49 H 0.067 0.933 50 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 8.417 -13.699 -20.405 25.978 hybrid contribution 0.097 1.003 2.214 2.433 sum 8.514 -12.696 -18.190 23.761 Atomic orbital electron populations 1.24038 0.95505 1.02820 0.98433 1.23402 0.96873 0.98354 1.01842 1.21304 0.93057 0.95662 0.90643 1.48148 1.08724 1.63039 1.11044 1.18744 0.93432 0.94243 0.79626 1.21705 1.42128 0.93325 1.00748 0.92455 1.25890 0.94502 1.03705 0.95130 1.70073 1.43274 1.37785 1.05730 0.85339 0.78144 0.78877 0.78292 1.18719 1.19613 1.20792 1.21804 0.82273 0.77118 0.92293 1.90625 1.57302 1.54292 1.44464 1.21833 0.94967 0.90542 0.83950 1.86390 1.72582 1.21428 1.53563 1.23001 0.93085 0.99134 1.03156 1.23025 0.95070 0.94187 0.95881 1.65649 1.01452 1.10455 1.44081 1.21319 0.96387 0.86728 1.00332 1.19738 0.95454 0.99618 0.94338 1.21236 0.98559 0.98440 0.94342 1.21458 0.93387 0.98686 1.00934 1.21474 0.99774 0.99689 0.93415 1.21367 0.97595 0.99561 0.96220 1.21230 0.94130 0.99564 0.99597 1.23156 0.96188 0.90788 0.97052 0.88404 0.86492 0.87144 0.91320 0.84852 0.96383 0.98578 0.92423 0.75528 0.87987 0.90703 0.88802 0.94076 0.93946 0.88117 0.84961 0.84072 0.84147 0.84759 0.86644 0.93303 0.86842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.41 14.32 67.78 0.97 -3.44 16 2 C -0.19 -5.41 8.86 25.64 0.23 -5.18 16 3 C 0.11 3.87 5.23 85.63 0.45 4.32 16 4 N -0.58 -25.06 2.44 -830.48 -2.03 -27.09 16 5 C 0.26 14.28 5.22 85.63 0.45 14.73 16 6 C -0.54 -31.05 9.39 25.60 0.24 -30.81 16 7 H 0.06 3.22 7.81 -2.91 -0.02 3.20 16 8 C 0.01 0.38 5.46 84.66 0.46 0.85 16 9 N -0.93 -56.49 13.29 21.45 0.28 -56.21 16 10 Si 0.97 44.68 29.54 68.60 2.03 46.71 16 11 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 12 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 13 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 14 C 0.48 19.95 6.59 87.66 0.58 20.53 16 15 O -0.59 -29.89 14.86 -3.04 -0.05 -29.94 16 16 C 0.13 3.98 0.90 -10.64 -0.01 3.97 16 17 O -0.53 -14.05 10.15 -148.98 -1.51 -15.57 16 18 C -0.15 -4.04 6.34 31.49 0.20 -3.84 16 19 C 0.05 1.12 4.95 86.45 0.43 1.54 16 20 N -0.49 -11.34 5.48 -886.05 -4.86 -16.19 16 21 C 0.08 1.56 5.22 85.56 0.45 2.01 16 22 C -0.09 -1.72 4.66 -19.87 -0.09 -1.81 16 23 C -0.11 -1.80 9.70 22.27 0.22 -1.58 16 24 C -0.13 -1.83 10.05 22.27 0.22 -1.60 16 25 C -0.13 -1.78 10.05 22.27 0.22 -1.55 16 26 C -0.13 -2.07 10.05 22.27 0.22 -1.85 16 27 C -0.13 -2.36 8.38 22.27 0.19 -2.18 16 28 C 0.06 1.46 3.97 86.45 0.34 1.81 16 29 H 0.10 2.55 7.84 -2.91 -0.02 2.53 16 30 H 0.12 2.47 8.06 -2.91 -0.02 2.44 16 31 H 0.11 3.00 6.69 -2.91 -0.02 2.98 16 32 H 0.07 2.46 7.77 -2.39 -0.02 2.44 16 33 H 0.13 3.95 4.03 -2.39 -0.01 3.94 16 34 H 0.02 1.03 8.07 -2.39 -0.02 1.01 16 35 H 0.00 -0.25 7.35 -2.39 -0.02 -0.26 16 36 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 37 H 0.39 8.76 9.07 -74.06 -0.67 8.09 16 38 H 0.10 2.41 7.98 -2.39 -0.02 2.39 16 39 H 0.07 2.50 6.51 -2.39 -0.02 2.49 16 40 H 0.09 2.10 7.74 -2.39 -0.02 2.08 16 41 H 0.04 1.05 7.13 -2.39 -0.02 1.03 16 42 H 0.04 0.87 7.82 -2.39 -0.02 0.85 16 43 H 0.10 1.70 8.08 -2.39 -0.02 1.68 16 44 H 0.13 1.90 8.06 -2.91 -0.02 1.88 16 45 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 46 H 0.14 1.32 8.06 -2.91 -0.02 1.30 16 47 H 0.13 1.67 8.06 -2.91 -0.02 1.65 16 48 H 0.12 2.16 7.39 -2.91 -0.02 2.13 16 49 H 0.05 1.38 7.14 -2.39 -0.02 1.36 16 50 H 0.11 2.71 6.73 -2.39 -0.02 2.70 16 Total: -1.00 -72.93 400.17 -0.10 -73.03 By element: Atomic # 1 Polarization: 29.09 SS G_CDS: 0.27 Total: 29.36 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: 5.76 Total: -4.10 kcal Atomic # 7 Polarization: -92.89 SS G_CDS: -6.60 Total: -99.49 kcal Atomic # 8 Polarization: -43.95 SS G_CDS: -1.56 Total: -45.51 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -72.93 -0.10 -73.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571749488.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.705 kcal (2) G-P(sol) polarization free energy of solvation -72.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds