Wall clock time and date at job start Wed Apr 1 2020 03:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46906 * 2 1 4 4 N 1.46496 * 109.47447 * 119.99914 * 2 1 3 5 5 C 1.46500 * 119.99610 * 121.94902 * 4 2 1 6 6 C 1.50700 * 109.47343 * 270.00010 * 5 4 2 7 7 H 1.08002 * 119.99965 * 0.02562 * 6 5 4 8 8 C 1.37882 * 120.00202 * 180.02562 * 6 5 4 9 9 N 1.31508 * 119.99626 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 119.99883 * 180.02562 * 8 6 5 11 11 H 1.48508 * 109.47030 * 90.00253 * 10 8 6 12 12 H 1.48500 * 109.47324 * 209.99954 * 10 8 6 13 13 H 1.48503 * 109.47542 * 330.00282 * 10 8 6 14 14 C 1.34771 * 120.00113 * 301.95474 * 4 2 1 15 15 O 1.21282 * 120.00494 * 5.72977 * 14 4 2 16 16 C 1.50707 * 119.99722 * 185.45769 * 14 4 2 17 17 H 1.08992 * 110.64468 * 52.40311 * 16 14 4 18 18 C 1.55154 * 110.71729 * 175.73949 * 16 14 4 19 19 C 1.54917 * 101.58160 * 153.86460 * 18 16 14 20 20 N 1.47429 * 104.82936 * 322.98861 * 19 18 16 21 21 C 1.34773 * 125.64577 * 204.16506 * 20 19 18 22 22 O 1.21561 * 119.99717 * 184.78915 * 21 20 19 23 23 C 1.47845 * 120.00236 * 4.78091 * 21 20 19 24 24 C 1.39574 * 120.14318 * 339.07379 * 23 21 20 25 25 C 1.37968 * 119.84835 * 179.78383 * 24 23 21 26 26 C 1.38353 * 120.14272 * 0.49215 * 25 24 23 27 27 C 1.38360 * 120.29804 * 359.73621 * 26 25 24 28 28 C 1.37958 * 120.14021 * 0.02587 * 27 26 25 29 29 C 1.47026 * 108.70151 * 24.13037 * 20 19 18 30 30 H 1.09003 * 109.46857 * 306.24894 * 1 2 3 31 31 H 1.09000 * 109.47489 * 66.25626 * 1 2 3 32 32 H 1.09009 * 109.46794 * 186.25705 * 1 2 3 33 33 H 1.09003 * 109.47204 * 240.00438 * 2 1 3 34 34 H 1.08998 * 109.47175 * 184.79383 * 3 2 1 35 35 H 1.09006 * 109.47085 * 304.79751 * 3 2 1 36 36 H 1.08999 * 109.46968 * 64.79769 * 3 2 1 37 37 H 1.08997 * 109.47421 * 30.00386 * 5 4 2 38 38 H 1.09000 * 109.47048 * 150.00454 * 5 4 2 39 39 H 0.97002 * 119.99775 * 180.02562 * 9 8 6 40 40 H 1.09003 * 111.00732 * 271.93561 * 18 16 14 41 41 H 1.09002 * 111.00628 * 35.79228 * 18 16 14 42 42 H 1.09001 * 110.36723 * 204.15353 * 19 18 16 43 43 H 1.08998 * 110.36633 * 81.83025 * 19 18 16 44 44 H 1.08000 * 120.08014 * 359.97438 * 24 23 21 45 45 H 1.07998 * 119.92099 * 180.22497 * 25 24 23 46 46 H 1.08003 * 119.85266 * 179.72034 * 26 25 24 47 47 H 1.07997 * 119.92800 * 180.02562 * 27 26 25 48 48 H 1.08003 * 120.06791 * 179.97438 * 28 27 26 49 49 H 1.09005 * 109.87916 * 239.52282 * 29 20 19 50 50 H 1.08996 * 110.00930 * 118.43108 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.8956 -1.8562 1.0620 6 6 2.0598 -3.1081 0.9882 7 1 0.9828 -3.0419 1.0359 8 6 2.6699 -4.3379 0.8597 9 7 3.9813 -4.4184 0.8020 10 14 1.6338 -5.8894 0.7674 11 1 1.3053 -6.1817 -0.6510 12 1 2.3940 -7.0273 1.3440 13 1 0.3783 -5.6927 1.5359 14 6 1.6607 -0.2536 2.4198 15 8 0.8534 0.6447 2.5310 16 6 2.2593 -0.8853 3.6502 17 1 3.3475 -0.8911 3.5885 18 6 1.7823 -0.1514 4.9313 19 6 1.9003 -1.2724 5.9940 20 7 1.4966 -2.5034 5.2904 21 6 1.0069 -3.6161 5.8723 22 8 0.7876 -4.6062 5.2021 23 6 0.7367 -3.6325 7.3258 24 6 1.3643 -2.7112 8.1658 25 6 1.1042 -2.7291 9.5206 26 6 0.2314 -3.6640 10.0483 27 6 -0.3903 -4.5830 9.2217 28 6 -0.1428 -4.5728 7.8646 29 6 1.7160 -2.3159 3.8487 30 1 -0.3633 0.6077 0.8288 31 1 -0.3634 0.4138 -0.9407 32 1 -0.3633 -1.0216 0.1120 33 1 1.8934 -0.5138 -0.8900 34 1 3.1266 1.4438 -0.0859 35 1 1.6081 1.9806 -0.8439 36 1 1.7485 1.9309 0.9298 37 1 3.4892 -1.7616 0.1528 38 1 3.5591 -1.9128 1.9249 39 1 4.4105 -5.2835 0.7113 40 1 2.4397 0.6845 5.1706 41 1 0.7498 0.1825 4.8288 42 1 1.2286 -1.0754 6.8295 43 1 2.9290 -1.3558 6.3448 44 1 2.0495 -1.9841 7.7558 45 1 1.5864 -2.0145 10.1712 46 1 0.0348 -3.6767 11.1101 47 1 -1.0708 -5.3099 9.6399 48 1 -0.6284 -5.2910 7.2205 49 1 0.7743 -2.4326 3.3123 50 1 2.4424 -3.0423 3.4844 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599234705.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:58 Heat of formation + Delta-G solvation = -26.048076 kcal Electronic energy + Delta-G solvation = -31461.155507 eV Core-core repulsion = 27453.916587 eV Total energy + Delta-G solvation = -4007.238920 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.52925 -39.56550 -38.21004 -36.88272 -35.38564 -33.36720 -32.30810 -31.39107 -31.07019 -30.54653 -28.60590 -27.05270 -26.64447 -24.93638 -23.35738 -22.77543 -22.41589 -22.10037 -20.58002 -19.65384 -18.10480 -17.27275 -16.66539 -16.52281 -16.39150 -15.73200 -15.36438 -15.32122 -14.72449 -14.42705 -14.31972 -14.19288 -13.93727 -13.58497 -13.43581 -13.10113 -12.90129 -12.82643 -12.57017 -12.47947 -12.23597 -12.05407 -11.97046 -11.75873 -11.54322 -11.39823 -11.38258 -10.95414 -10.82508 -10.79439 -10.77528 -10.64107 -10.60021 -10.35669 -10.01337 -9.68338 -9.64614 -9.10285 -9.04428 -8.85652 -8.51377 -8.29212 -7.74068 -6.15838 -4.22363 0.84276 1.23262 2.98316 3.07905 3.31603 3.37337 3.40820 3.50280 3.78904 3.87875 4.42152 4.49804 4.60175 4.74705 4.78697 4.94901 5.04715 5.10791 5.19428 5.26987 5.31558 5.35604 5.46557 5.54374 5.60048 5.66725 5.69761 5.71249 5.84582 5.86264 6.02468 6.07255 6.18875 6.20505 6.24293 6.27598 6.29793 6.32557 6.42267 6.51745 6.56957 6.68585 6.72921 6.77348 6.80213 6.86752 7.16141 7.56407 7.75680 7.79514 8.05308 8.32231 8.41645 8.80210 8.97913 9.46500 10.90280 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010381 B = 0.004038 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2696.471320 B = 6931.780634 C = 8819.611441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.148 3.852 3 C -0.164 4.164 4 N -0.589 5.589 5 C 0.235 3.765 6 C -0.535 4.535 7 H 0.061 0.939 8 C 0.072 3.928 9 N -0.890 5.890 10 Si 0.890 3.110 11 H -0.282 1.282 12 H -0.285 1.285 13 H -0.268 1.268 14 C 0.529 3.471 15 O -0.565 6.565 16 C -0.116 4.116 17 H 0.104 0.896 18 C -0.116 4.116 19 C 0.084 3.916 20 N -0.611 5.611 21 C 0.565 3.435 22 O -0.527 6.527 23 C -0.121 4.121 24 C -0.111 4.111 25 C -0.130 4.130 26 C -0.103 4.103 27 C -0.129 4.129 28 C -0.064 4.064 29 C 0.131 3.869 30 H 0.076 0.924 31 H 0.049 0.951 32 H 0.056 0.944 33 H 0.084 0.916 34 H 0.049 0.951 35 H 0.056 0.944 36 H 0.069 0.931 37 H 0.035 0.965 38 H 0.038 0.962 39 H 0.265 0.735 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.074 0.926 44 H 0.149 0.851 45 H 0.127 0.873 46 H 0.123 0.877 47 H 0.127 0.873 48 H 0.134 0.866 49 H 0.075 0.925 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.836 7.350 14.053 16.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.044 3.956 3 C -0.222 4.222 4 N -0.319 5.319 5 C 0.116 3.884 6 C -0.574 4.574 7 H 0.079 0.921 8 C -0.132 4.132 9 N -0.528 5.528 10 Si 0.718 3.282 11 H -0.208 1.208 12 H -0.211 1.211 13 H -0.192 1.192 14 C 0.316 3.684 15 O -0.446 6.446 16 C -0.137 4.137 17 H 0.122 0.878 18 C -0.154 4.154 19 C -0.038 4.038 20 N -0.345 5.345 21 C 0.353 3.647 22 O -0.404 6.404 23 C -0.124 4.124 24 C -0.129 4.129 25 C -0.148 4.148 26 C -0.121 4.121 27 C -0.147 4.147 28 C -0.083 4.083 29 C 0.009 3.991 30 H 0.095 0.905 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.053 0.947 38 H 0.055 0.945 39 H 0.075 0.925 40 H 0.102 0.898 41 H 0.109 0.891 42 H 0.106 0.894 43 H 0.092 0.908 44 H 0.166 0.834 45 H 0.145 0.855 46 H 0.141 0.859 47 H 0.145 0.855 48 H 0.152 0.848 49 H 0.093 0.907 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.222 7.051 13.698 15.740 hybrid contribution -0.282 -1.131 -0.178 1.180 sum -3.504 5.920 13.520 15.169 Atomic orbital electron populations 1.22194 0.95567 1.02657 1.01831 1.20840 0.94332 0.92137 0.88283 1.22165 1.00501 0.96886 1.02616 1.48339 1.48764 1.30605 1.04181 1.19524 0.89115 0.81381 0.98430 1.21425 0.93617 0.90606 1.51711 0.92059 1.24848 0.94871 0.99024 0.94420 1.69906 1.08209 1.25492 1.49220 0.86580 0.81070 0.82673 0.77915 1.20785 1.21073 1.19221 1.19957 0.81431 0.82461 0.84516 1.90532 1.34770 1.32454 1.86875 1.22287 1.01946 0.95758 0.93736 0.87770 1.22750 1.03859 0.96437 0.92380 1.22898 0.99945 0.84573 0.96428 1.48456 1.63239 1.13712 1.09075 1.17935 0.77756 0.82090 0.86878 1.90841 1.52236 1.32603 1.64685 1.20000 1.00693 0.98477 0.93195 1.22234 0.99143 0.97699 0.93805 1.21133 0.99151 0.99481 0.95005 1.21342 0.96066 0.94854 0.99844 1.21133 1.00709 0.99604 0.93288 1.21298 0.95444 0.96323 0.95259 1.22082 1.03085 0.95219 0.78686 0.90539 0.93234 0.92520 0.89819 0.93153 0.92523 0.91245 0.94695 0.94455 0.92550 0.89765 0.89098 0.89409 0.90813 0.83377 0.85541 0.85857 0.85508 0.84845 0.90657 0.87803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 8.95 37.16 0.33 -2.56 16 2 C 0.15 2.66 3.27 -67.93 -0.22 2.44 16 3 C -0.16 -2.55 9.21 37.16 0.34 -2.21 16 4 N -0.59 -11.77 2.41 -167.47 -0.40 -12.17 16 5 C 0.24 5.34 4.67 -5.19 -0.02 5.31 16 6 C -0.54 -13.60 6.82 -34.44 -0.23 -13.83 16 7 H 0.06 1.62 7.73 -52.49 -0.41 1.22 16 8 C 0.07 1.92 5.46 -17.82 -0.10 1.82 16 9 N -0.89 -24.46 13.29 55.43 0.74 -23.72 16 10 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 14 C 0.53 10.19 6.26 -10.98 -0.07 10.12 16 15 O -0.57 -11.42 12.00 5.56 0.07 -11.36 16 16 C -0.12 -1.96 2.36 -89.94 -0.21 -2.17 16 17 H 0.10 1.68 7.23 -51.93 -0.38 1.31 16 18 C -0.12 -1.56 6.22 -24.58 -0.15 -1.71 16 19 C 0.08 1.04 5.01 -2.52 -0.01 1.02 16 20 N -0.61 -10.42 3.33 -171.62 -0.57 -10.99 16 21 C 0.56 10.43 7.71 -12.33 -0.10 10.33 16 22 O -0.53 -12.08 16.87 5.31 0.09 -11.99 16 23 C -0.12 -1.75 5.80 -104.97 -0.61 -2.36 16 24 C -0.11 -1.25 8.06 -39.18 -0.32 -1.57 16 25 C -0.13 -1.20 10.03 -39.64 -0.40 -1.60 16 26 C -0.10 -0.93 10.04 -39.49 -0.40 -1.32 16 27 C -0.13 -1.33 10.03 -39.64 -0.40 -1.72 16 28 C -0.06 -0.86 9.59 -39.19 -0.38 -1.23 16 29 C 0.13 2.56 4.62 -3.06 -0.01 2.55 16 30 H 0.08 1.43 6.09 -51.93 -0.32 1.12 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 1.09 8.14 -51.92 -0.42 0.66 16 33 H 0.08 1.52 7.81 -51.93 -0.41 1.11 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 1.17 6.40 -51.93 -0.33 0.84 16 37 H 0.03 0.84 7.94 -51.93 -0.41 0.43 16 38 H 0.04 0.86 5.81 -51.93 -0.30 0.56 16 39 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 40 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.09 1.36 7.33 -51.93 -0.38 0.98 16 42 H 0.09 0.91 5.66 -51.93 -0.29 0.62 16 43 H 0.07 0.76 7.53 -51.93 -0.39 0.37 16 44 H 0.15 1.43 3.95 -52.49 -0.21 1.23 16 45 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 46 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 47 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 48 H 0.13 1.84 7.79 -52.48 -0.41 1.43 16 49 H 0.08 1.69 7.46 -51.93 -0.39 1.30 16 50 H 0.10 2.37 6.62 -51.93 -0.34 2.03 16 LS Contribution 391.42 15.07 5.90 5.90 Total: -1.00 -31.26 391.42 -9.64 -40.90 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -7.48 Total: 5.20 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: -2.95 Total: 1.32 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: -0.24 Total: -46.88 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: 0.16 Total: -23.35 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.26 -9.64 -40.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599234705.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.851 kcal (2) G-P(sol) polarization free energy of solvation -31.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds