Wall clock time and date at job start Wed Apr 1 2020 03:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46906 * 2 1 4 4 N 1.46496 * 109.47447 * 119.99914 * 2 1 3 5 5 C 1.46500 * 119.99610 * 121.94902 * 4 2 1 6 6 C 1.50700 * 109.47343 * 270.00010 * 5 4 2 7 7 H 1.08002 * 119.99965 * 0.02562 * 6 5 4 8 8 C 1.37882 * 120.00202 * 180.02562 * 6 5 4 9 9 N 1.31508 * 119.99626 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 119.99883 * 180.02562 * 8 6 5 11 11 H 1.48508 * 109.47030 * 90.00253 * 10 8 6 12 12 H 1.48500 * 109.47324 * 209.99954 * 10 8 6 13 13 H 1.48503 * 109.47542 * 330.00282 * 10 8 6 14 14 C 1.34771 * 120.00113 * 301.95474 * 4 2 1 15 15 O 1.21282 * 120.00494 * 5.72977 * 14 4 2 16 16 C 1.50707 * 119.99722 * 185.45769 * 14 4 2 17 17 H 1.08992 * 110.64468 * 52.40311 * 16 14 4 18 18 C 1.55154 * 110.71729 * 175.73949 * 16 14 4 19 19 C 1.54917 * 101.58160 * 153.86460 * 18 16 14 20 20 N 1.47429 * 104.82936 * 322.98861 * 19 18 16 21 21 C 1.34773 * 125.64577 * 204.16506 * 20 19 18 22 22 O 1.21561 * 119.99717 * 184.78915 * 21 20 19 23 23 C 1.47845 * 120.00236 * 4.78091 * 21 20 19 24 24 C 1.39574 * 120.14318 * 339.07379 * 23 21 20 25 25 C 1.37968 * 119.84835 * 179.78383 * 24 23 21 26 26 C 1.38353 * 120.14272 * 0.49215 * 25 24 23 27 27 C 1.38360 * 120.29804 * 359.73621 * 26 25 24 28 28 C 1.37958 * 120.14021 * 0.02587 * 27 26 25 29 29 C 1.47026 * 108.70151 * 24.13037 * 20 19 18 30 30 H 1.09003 * 109.46857 * 306.24894 * 1 2 3 31 31 H 1.09000 * 109.47489 * 66.25626 * 1 2 3 32 32 H 1.09009 * 109.46794 * 186.25705 * 1 2 3 33 33 H 1.09003 * 109.47204 * 240.00438 * 2 1 3 34 34 H 1.08998 * 109.47175 * 184.79383 * 3 2 1 35 35 H 1.09006 * 109.47085 * 304.79751 * 3 2 1 36 36 H 1.08999 * 109.46968 * 64.79769 * 3 2 1 37 37 H 1.08997 * 109.47421 * 30.00386 * 5 4 2 38 38 H 1.09000 * 109.47048 * 150.00454 * 5 4 2 39 39 H 0.97002 * 119.99775 * 180.02562 * 9 8 6 40 40 H 1.09003 * 111.00732 * 271.93561 * 18 16 14 41 41 H 1.09002 * 111.00628 * 35.79228 * 18 16 14 42 42 H 1.09001 * 110.36723 * 204.15353 * 19 18 16 43 43 H 1.08998 * 110.36633 * 81.83025 * 19 18 16 44 44 H 1.08000 * 120.08014 * 359.97438 * 24 23 21 45 45 H 1.07998 * 119.92099 * 180.22497 * 25 24 23 46 46 H 1.08003 * 119.85266 * 179.72034 * 26 25 24 47 47 H 1.07997 * 119.92800 * 180.02562 * 27 26 25 48 48 H 1.08003 * 120.06791 * 179.97438 * 28 27 26 49 49 H 1.09005 * 109.87916 * 239.52282 * 29 20 19 50 50 H 1.08996 * 110.00930 * 118.43108 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.8956 -1.8562 1.0620 6 6 2.0598 -3.1081 0.9882 7 1 0.9828 -3.0419 1.0359 8 6 2.6699 -4.3379 0.8597 9 7 3.9813 -4.4184 0.8020 10 14 1.6338 -5.8894 0.7674 11 1 1.3053 -6.1817 -0.6510 12 1 2.3940 -7.0273 1.3440 13 1 0.3783 -5.6927 1.5359 14 6 1.6607 -0.2536 2.4198 15 8 0.8534 0.6447 2.5310 16 6 2.2593 -0.8853 3.6502 17 1 3.3475 -0.8911 3.5885 18 6 1.7823 -0.1514 4.9313 19 6 1.9003 -1.2724 5.9940 20 7 1.4966 -2.5034 5.2904 21 6 1.0069 -3.6161 5.8723 22 8 0.7876 -4.6062 5.2021 23 6 0.7367 -3.6325 7.3258 24 6 1.3643 -2.7112 8.1658 25 6 1.1042 -2.7291 9.5206 26 6 0.2314 -3.6640 10.0483 27 6 -0.3903 -4.5830 9.2217 28 6 -0.1428 -4.5728 7.8646 29 6 1.7160 -2.3159 3.8487 30 1 -0.3633 0.6077 0.8288 31 1 -0.3634 0.4138 -0.9407 32 1 -0.3633 -1.0216 0.1120 33 1 1.8934 -0.5138 -0.8900 34 1 3.1266 1.4438 -0.0859 35 1 1.6081 1.9806 -0.8439 36 1 1.7485 1.9309 0.9298 37 1 3.4892 -1.7616 0.1528 38 1 3.5591 -1.9128 1.9249 39 1 4.4105 -5.2835 0.7113 40 1 2.4397 0.6845 5.1706 41 1 0.7498 0.1825 4.8288 42 1 1.2286 -1.0754 6.8295 43 1 2.9290 -1.3558 6.3448 44 1 2.0495 -1.9841 7.7558 45 1 1.5864 -2.0145 10.1712 46 1 0.0348 -3.6767 11.1101 47 1 -1.0708 -5.3099 9.6399 48 1 -0.6284 -5.2910 7.2205 49 1 0.7743 -2.4326 3.3123 50 1 2.4424 -3.0423 3.4844 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599234705.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:57 Heat of formation + Delta-G solvation = -44.050109 kcal Electronic energy + Delta-G solvation = -31461.936134 eV Core-core repulsion = 27453.916587 eV Total energy + Delta-G solvation = -4008.019547 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.86587 -40.94637 -39.29771 -38.31290 -37.02060 -35.15994 -33.84948 -32.78090 -31.93374 -31.71325 -29.88919 -28.97197 -28.01320 -26.21435 -24.96192 -24.23883 -23.49863 -23.18861 -21.93492 -20.88496 -19.65034 -18.59514 -18.39445 -18.16030 -17.45620 -17.08416 -16.89250 -16.64163 -16.35674 -15.95870 -15.55464 -15.47575 -15.07765 -14.77891 -14.61003 -14.42197 -14.41096 -14.20826 -14.02669 -13.85232 -13.68521 -13.45701 -13.42687 -13.22188 -12.91035 -12.82510 -12.77032 -12.70831 -12.36204 -12.26208 -12.21778 -12.09838 -11.97136 -11.76018 -11.70765 -11.56508 -11.06144 -10.65213 -10.37081 -10.02386 -9.91696 -9.68613 -9.44115 -8.26395 -6.34808 -0.10842 0.41489 1.26511 1.33574 1.42188 1.60215 1.77130 1.95060 2.26923 2.41065 2.86567 3.06422 3.35146 3.42895 3.70145 3.73259 3.97289 4.03909 4.06361 4.17912 4.24008 4.26668 4.28192 4.37131 4.41648 4.49624 4.52700 4.54583 4.71682 4.79698 4.81538 4.83720 4.90947 4.97959 5.00772 5.02643 5.06550 5.08422 5.15204 5.19852 5.23616 5.33466 5.39676 5.42557 5.45255 5.50883 5.64692 5.93692 5.97416 6.03147 6.42552 6.56830 6.82024 7.01900 7.30089 7.40965 8.78323 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010381 B = 0.004038 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2696.471320 B = 6931.780634 C = 8819.611441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.136 3.864 3 C -0.150 4.150 4 N -0.595 5.595 5 C 0.253 3.747 6 C -0.527 4.527 7 H 0.041 0.959 8 C 0.039 3.961 9 N -0.910 5.910 10 Si 0.928 3.072 11 H -0.265 1.265 12 H -0.286 1.286 13 H -0.291 1.291 14 C 0.525 3.475 15 O -0.571 6.571 16 C -0.113 4.113 17 H 0.117 0.883 18 C -0.104 4.104 19 C 0.083 3.917 20 N -0.613 5.613 21 C 0.554 3.446 22 O -0.594 6.594 23 C -0.149 4.149 24 C -0.109 4.109 25 C -0.121 4.121 26 C -0.090 4.090 27 C -0.129 4.129 28 C -0.089 4.089 29 C 0.144 3.856 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.028 0.972 33 H 0.081 0.919 34 H 0.055 0.945 35 H 0.083 0.917 36 H 0.056 0.944 37 H 0.025 0.975 38 H 0.035 0.965 39 H 0.266 0.734 40 H 0.122 0.878 41 H 0.075 0.925 42 H 0.117 0.883 43 H 0.107 0.893 44 H 0.166 0.834 45 H 0.167 0.833 46 H 0.162 0.838 47 H 0.150 0.850 48 H 0.109 0.891 49 H 0.033 0.967 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.232 9.913 17.175 19.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.033 3.967 3 C -0.208 4.208 4 N -0.325 5.325 5 C 0.132 3.868 6 C -0.565 4.565 7 H 0.059 0.941 8 C -0.162 4.162 9 N -0.550 5.550 10 Si 0.755 3.245 11 H -0.191 1.191 12 H -0.211 1.211 13 H -0.217 1.217 14 C 0.313 3.687 15 O -0.453 6.453 16 C -0.135 4.135 17 H 0.135 0.865 18 C -0.142 4.142 19 C -0.037 4.037 20 N -0.345 5.345 21 C 0.346 3.654 22 O -0.476 6.476 23 C -0.152 4.152 24 C -0.127 4.127 25 C -0.139 4.139 26 C -0.108 4.108 27 C -0.146 4.146 28 C -0.109 4.109 29 C 0.021 3.979 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.048 0.952 33 H 0.099 0.901 34 H 0.074 0.926 35 H 0.101 0.899 36 H 0.075 0.925 37 H 0.043 0.957 38 H 0.053 0.947 39 H 0.075 0.925 40 H 0.140 0.860 41 H 0.094 0.906 42 H 0.134 0.866 43 H 0.125 0.875 44 H 0.183 0.817 45 H 0.184 0.816 46 H 0.180 0.820 47 H 0.168 0.832 48 H 0.127 0.873 49 H 0.051 0.949 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.617 9.666 16.828 19.582 hybrid contribution -0.558 -1.913 -1.065 2.259 sum -3.175 7.753 15.764 17.851 Atomic orbital electron populations 1.22102 0.95356 1.00855 1.02999 1.21098 0.94554 0.93661 0.87411 1.22041 1.00911 0.94772 1.03084 1.48346 1.48692 1.30062 1.05437 1.19120 0.88765 0.81322 0.97576 1.21505 0.92845 0.91929 1.50261 0.94057 1.25251 0.95489 1.00606 0.94887 1.69934 1.08660 1.25798 1.50569 0.86016 0.79148 0.81112 0.78200 1.19058 1.21127 1.21681 1.20312 0.81188 0.82323 0.84845 1.90523 1.34893 1.32860 1.87028 1.22314 1.02405 0.94151 0.94633 0.86548 1.22782 1.03658 0.97497 0.90262 1.23289 1.02416 0.81631 0.96395 1.48567 1.62621 1.15101 1.08229 1.18807 0.76538 0.81378 0.88688 1.90783 1.55127 1.35066 1.66595 1.19801 1.03406 1.01247 0.90759 1.22423 0.98757 0.96943 0.94569 1.21609 0.98335 0.99688 0.94230 1.21852 0.94267 0.93197 1.01513 1.21415 1.00965 1.00478 0.91789 1.21316 0.96345 0.96412 0.96788 1.21588 0.99743 0.96177 0.80435 0.91686 0.90146 0.95235 0.90118 0.92572 0.89861 0.92456 0.95721 0.94737 0.92474 0.85970 0.90600 0.86570 0.87542 0.81682 0.81553 0.82012 0.83241 0.87277 0.94889 0.91859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.48 8.95 71.98 0.64 -4.83 16 2 C 0.14 4.88 3.27 44.99 0.15 5.03 16 3 C -0.15 -4.43 9.21 71.98 0.66 -3.77 16 4 N -0.60 -24.34 2.41 -802.14 -1.93 -26.27 16 5 C 0.25 11.89 4.67 85.63 0.40 12.29 16 6 C -0.53 -28.20 6.82 25.60 0.17 -28.02 16 7 H 0.04 2.35 7.73 -2.91 -0.02 2.32 16 8 C 0.04 2.15 5.46 84.66 0.46 2.61 16 9 N -0.91 -51.48 13.29 21.45 0.28 -51.19 16 10 Si 0.93 47.16 29.54 68.60 2.03 49.19 16 11 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 12 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 13 H -0.29 -15.79 7.11 99.48 0.71 -15.08 16 14 C 0.53 20.48 6.26 87.66 0.55 21.03 16 15 O -0.57 -23.01 12.00 -3.03 -0.04 -23.04 16 16 C -0.11 -3.86 2.36 -10.35 -0.02 -3.88 16 17 H 0.12 3.69 7.23 -2.39 -0.02 3.67 16 18 C -0.10 -2.57 6.22 31.99 0.20 -2.37 16 19 C 0.08 1.85 5.01 86.86 0.44 2.29 16 20 N -0.61 -21.62 3.33 -815.16 -2.71 -24.33 16 21 C 0.55 21.83 7.71 86.79 0.67 22.50 16 22 O -0.59 -30.07 16.87 -3.91 -0.07 -30.14 16 23 C -0.15 -4.37 5.80 -20.09 -0.12 -4.49 16 24 C -0.11 -2.15 8.06 22.53 0.18 -1.97 16 25 C -0.12 -1.64 10.03 22.23 0.22 -1.41 16 26 C -0.09 -1.21 10.04 22.33 0.22 -0.99 16 27 C -0.13 -2.38 10.03 22.23 0.22 -2.15 16 28 C -0.09 -2.45 9.59 22.53 0.22 -2.24 16 29 C 0.14 6.02 4.62 86.73 0.40 6.42 16 30 H 0.06 2.44 6.09 -2.39 -0.01 2.42 16 31 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 33 H 0.08 2.93 7.81 -2.39 -0.02 2.91 16 34 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 36 H 0.06 1.84 6.40 -2.39 -0.02 1.83 16 37 H 0.02 1.22 7.94 -2.39 -0.02 1.20 16 38 H 0.03 1.65 5.81 -2.39 -0.01 1.64 16 39 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 40 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.08 2.15 7.33 -2.39 -0.02 2.13 16 42 H 0.12 2.00 5.66 -2.39 -0.01 1.99 16 43 H 0.11 1.77 7.53 -2.39 -0.02 1.75 16 44 H 0.17 2.53 3.95 -2.91 -0.01 2.52 16 45 H 0.17 1.00 8.06 -2.91 -0.02 0.98 16 46 H 0.16 1.00 8.06 -2.91 -0.02 0.97 16 47 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 48 H 0.11 3.38 7.79 -2.91 -0.02 3.36 16 49 H 0.03 1.62 7.46 -2.38 -0.02 1.60 16 50 H 0.06 3.14 6.62 -2.39 -0.02 3.12 16 Total: -1.00 -75.52 391.42 4.18 -71.34 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: 0.95 Total: 18.40 kcal Atomic # 6 Polarization: 10.37 SS G_CDS: 5.67 Total: 16.04 kcal Atomic # 7 Polarization: -97.44 SS G_CDS: -4.36 Total: -101.79 kcal Atomic # 8 Polarization: -53.08 SS G_CDS: -0.10 Total: -53.18 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.19 kcal Total: -75.52 4.18 -71.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599234705.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.292 kcal (2) G-P(sol) polarization free energy of solvation -75.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds