Wall clock time and date at job start Wed Apr 1 2020 03:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46905 * 2 1 4 4 H 1.08997 * 109.47350 * 54.99650 * 3 2 1 5 5 C 1.50699 * 109.47024 * 175.00334 * 3 2 1 6 6 H 1.08007 * 119.99924 * 120.00180 * 5 3 2 7 7 C 1.37873 * 120.00114 * 299.99270 * 5 3 2 8 8 N 1.31525 * 119.99854 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00364 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47189 * 90.00332 * 9 7 5 11 11 H 1.48501 * 109.47551 * 210.00210 * 9 7 5 12 12 H 1.48504 * 109.47176 * 330.00154 * 9 7 5 13 13 N 1.46504 * 109.46825 * 294.99733 * 3 2 1 14 14 C 1.34781 * 119.99573 * 85.00155 * 13 3 2 15 15 O 1.21283 * 120.00013 * 3.88896 * 14 13 3 16 16 C 1.50696 * 119.99747 * 183.88665 * 14 13 3 17 17 C 1.53002 * 110.43739 * 49.91131 * 16 14 13 18 18 C 1.50707 * 109.46906 * 68.22396 * 17 16 14 19 19 C 1.38234 * 119.99969 * 263.34441 * 18 17 16 20 20 C 1.38234 * 119.99405 * 179.74688 * 19 18 17 21 21 C 1.38233 * 120.00409 * 0.52525 * 20 19 18 22 22 C 1.38238 * 119.99979 * 359.75284 * 21 20 19 23 23 C 1.38234 * 119.99499 * 83.62248 * 18 17 16 24 24 C 1.54631 * 110.48839 * 287.22951 * 16 14 13 25 25 C 1.54484 * 101.76306 * 216.52395 * 24 16 14 26 26 N 1.46761 * 105.47611 * 25.41436 * 25 24 16 27 27 C 1.46505 * 124.35120 * 163.24838 * 26 25 24 28 28 C 1.34424 * 111.30108 * 342.98523 * 26 25 24 29 29 O 1.21277 * 124.94236 * 180.39047 * 28 26 25 30 30 H 1.08999 * 109.47574 * 299.99922 * 1 2 3 31 31 H 1.08996 * 109.47578 * 60.00519 * 1 2 3 32 32 H 1.09000 * 109.46766 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47574 * 240.00078 * 2 1 3 34 34 H 1.08996 * 109.47578 * 119.99481 * 2 1 3 35 35 H 0.96998 * 119.99917 * 179.97438 * 8 7 5 36 36 H 0.96994 * 120.00639 * 264.99789 * 13 3 2 37 37 H 1.08999 * 109.47744 * 188.22833 * 17 16 14 38 38 H 1.08999 * 109.47131 * 308.22872 * 17 16 14 39 39 H 1.08001 * 120.00133 * 359.97438 * 19 18 17 40 40 H 1.08006 * 119.99601 * 180.29727 * 20 19 18 41 41 H 1.07999 * 120.00281 * 179.76644 * 21 20 19 42 42 H 1.07998 * 120.00014 * 179.97438 * 22 21 20 43 43 H 1.08001 * 120.00501 * 359.97438 * 23 18 17 44 44 H 1.08997 * 110.96681 * 334.63837 * 24 16 14 45 45 H 1.08997 * 110.97386 * 98.40577 * 24 16 14 46 46 H 1.08995 * 110.24778 * 266.41153 * 25 24 16 47 47 H 1.09000 * 110.24533 * 144.41532 * 25 24 16 48 48 H 1.08998 * 109.47063 * 179.72565 * 27 26 25 49 49 H 1.08996 * 109.46712 * 299.72444 * 27 26 25 50 50 H 1.08997 * 109.46700 * 59.72260 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8417 5 6 3.5418 1.4444 0.1237 6 1 4.1471 1.8890 -0.6525 7 6 4.1433 0.8786 1.2279 8 7 3.4062 0.3369 2.1729 9 14 6.0049 0.8815 1.3817 10 1 6.4416 2.1144 2.0847 11 1 6.4396 -0.3095 2.1549 12 1 6.6135 0.8418 0.0277 13 7 1.6523 2.0975 -1.2519 14 6 0.4349 2.6643 -1.3670 15 8 -0.3126 2.6945 -0.4125 16 6 0.0028 3.2606 -2.6818 17 6 0.2377 2.2675 -3.8217 18 6 -0.7062 1.1019 -3.6750 19 6 -0.2793 -0.0600 -3.0597 20 6 -1.1468 -1.1272 -2.9205 21 6 -2.4378 -1.0365 -3.4063 22 6 -2.8630 0.1233 -4.0268 23 6 -1.9972 1.1926 -4.1610 24 6 0.7562 4.5842 -2.9495 25 6 -0.3355 5.4346 -3.6362 26 7 -1.6128 4.8898 -3.1613 27 6 -2.8977 5.5862 -3.2636 28 6 -1.4533 3.6673 -2.6256 29 8 -2.3466 2.9892 -2.1640 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5137 0.8900 35 1 3.8293 -0.0615 2.9495 36 1 2.2717 2.1232 -1.9978 37 1 0.0592 2.7617 -4.7768 38 1 1.2663 1.9089 -3.7850 39 1 0.7308 -0.1326 -2.6844 40 1 -0.8148 -2.0332 -2.4354 41 1 -3.1144 -1.8717 -3.3008 42 1 -3.8714 0.1940 -4.4067 43 1 -2.3294 2.0989 -4.6454 44 1 1.0795 5.0446 -2.0159 45 1 1.6026 4.4231 -3.6170 46 1 -0.2634 5.3375 -4.7194 47 1 -0.2391 6.4800 -3.3433 48 1 -3.6844 4.9610 -2.8416 49 1 -2.8463 6.5260 -2.7139 50 1 -3.1181 5.7898 -4.3115 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602137133.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:17 Heat of formation + Delta-G solvation = -39.680633 kcal Electronic energy + Delta-G solvation = -32811.500248 eV Core-core repulsion = 28803.670176 eV Total energy + Delta-G solvation = -4007.830072 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.22045 -38.77311 -38.36004 -36.27833 -35.03357 -34.32187 -32.24386 -31.54404 -30.95900 -30.37905 -28.34562 -27.03000 -26.73329 -25.25884 -23.18848 -22.31255 -22.18445 -21.17010 -20.63018 -19.39233 -18.83074 -17.38107 -16.66956 -16.28271 -16.23115 -15.60320 -15.27249 -14.96132 -14.87074 -14.74730 -14.50984 -14.07216 -13.81887 -13.48275 -13.30361 -13.10611 -12.89314 -12.61994 -12.53295 -12.45177 -12.31944 -12.25035 -12.03487 -11.86964 -11.69372 -11.37390 -11.32081 -11.19937 -10.93565 -10.82278 -10.69010 -10.60673 -10.28686 -10.09041 -9.58118 -9.49223 -9.01162 -8.91036 -8.72698 -8.51963 -8.37795 -8.33715 -7.77115 -6.10486 -4.20255 1.63843 1.77049 2.77600 3.01481 3.24294 3.31454 3.32536 3.36912 4.00256 4.08469 4.27891 4.35708 4.47906 4.81603 4.81764 5.03656 5.05583 5.19695 5.20865 5.21400 5.27701 5.32962 5.35847 5.37643 5.44331 5.59160 5.62828 5.64707 5.78154 5.87426 5.92161 5.96080 6.30073 6.35374 6.48845 6.53849 6.59414 6.75531 6.78019 6.82833 6.89353 7.12049 7.15719 7.30245 7.32785 7.44758 7.52009 7.64833 7.76864 7.93630 8.22060 8.40333 8.68462 8.80283 9.17010 9.47329 10.94520 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012017 B = 0.004428 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.493680 B = 6322.392057 C = 7697.841465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.124 4.124 3 C 0.273 3.727 4 H 0.048 0.952 5 C -0.533 4.533 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.706 5.706 14 C 0.526 3.474 15 O -0.525 6.525 16 C -0.114 4.114 17 C -0.057 4.057 18 C -0.093 4.093 19 C -0.091 4.091 20 C -0.118 4.118 21 C -0.120 4.120 22 C -0.124 4.124 23 C -0.088 4.088 24 C -0.123 4.123 25 C 0.107 3.893 26 N -0.633 5.633 27 C 0.098 3.902 28 C 0.542 3.458 29 O -0.484 6.484 30 H 0.043 0.957 31 H 0.058 0.942 32 H 0.020 0.980 33 H 0.029 0.971 34 H 0.097 0.903 35 H 0.264 0.736 36 H 0.385 0.615 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.127 0.873 40 H 0.119 0.881 41 H 0.115 0.885 42 H 0.113 0.887 43 H 0.107 0.893 44 H 0.090 0.910 45 H 0.099 0.901 46 H 0.071 0.929 47 H 0.078 0.922 48 H 0.081 0.919 49 H 0.058 0.942 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.284 6.738 -16.847 19.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.163 4.163 3 C 0.171 3.829 4 H 0.066 0.934 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.727 3.273 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.355 5.355 14 C 0.309 3.691 15 O -0.401 6.401 16 C -0.122 4.122 17 C -0.095 4.095 18 C -0.093 4.093 19 C -0.109 4.109 20 C -0.136 4.136 21 C -0.138 4.138 22 C -0.142 4.142 23 C -0.107 4.107 24 C -0.162 4.162 25 C -0.016 4.016 26 N -0.370 5.370 27 C -0.044 4.044 28 C 0.328 3.672 29 O -0.355 6.355 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.039 0.961 33 H 0.048 0.952 34 H 0.115 0.885 35 H 0.074 0.926 36 H 0.218 0.782 37 H 0.099 0.901 38 H 0.108 0.892 39 H 0.145 0.855 40 H 0.137 0.863 41 H 0.133 0.867 42 H 0.131 0.869 43 H 0.125 0.875 44 H 0.109 0.891 45 H 0.118 0.882 46 H 0.089 0.911 47 H 0.097 0.903 48 H 0.100 0.900 49 H 0.076 0.924 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.386 6.291 -15.674 18.857 hybrid contribution 1.277 0.133 -0.104 1.288 sum -7.109 6.424 -15.778 18.459 Atomic orbital electron populations 1.22052 0.98059 0.98213 1.02125 1.21912 0.92769 0.99611 1.01973 1.18768 0.94038 0.89160 0.80908 0.93428 1.21213 0.90703 1.39011 1.06233 0.92138 1.24876 0.98417 0.94868 0.95447 1.69907 1.35051 1.37523 1.09311 0.86490 0.85075 0.77605 0.78149 1.20657 1.21147 1.19870 1.46410 1.14178 1.56309 1.18571 1.19368 0.82942 0.79106 0.87731 1.90744 1.52819 1.57515 1.39040 1.21759 0.95820 0.96999 0.97583 1.20512 0.99804 0.92946 0.96203 1.19569 0.94790 0.94991 0.99922 1.21140 1.00485 0.92644 0.96650 1.21069 0.93922 0.98962 0.99683 1.21054 0.96098 0.97814 0.98827 1.20916 0.98965 0.93770 1.00518 1.20736 0.93067 0.97554 0.99303 1.22732 0.97630 0.93015 1.02774 1.22018 0.82519 0.98442 0.98631 1.48056 1.08280 1.18568 1.62126 1.21477 0.84606 0.97136 1.01156 1.19945 0.89741 0.80758 0.76806 1.90747 1.46321 1.55418 1.43038 0.93755 0.92305 0.96084 0.95192 0.88509 0.92609 0.78231 0.90085 0.89239 0.85496 0.86345 0.86722 0.86873 0.87524 0.89121 0.88223 0.91088 0.90315 0.90008 0.92364 0.92460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 7.78 37.16 0.29 -3.12 16 2 C -0.12 -2.97 5.24 -26.73 -0.14 -3.11 16 3 C 0.27 6.69 2.25 -69.08 -0.16 6.53 16 4 H 0.05 1.39 7.52 -51.93 -0.39 1.00 16 5 C -0.53 -13.61 8.73 -34.44 -0.30 -13.91 16 6 H 0.06 1.46 7.74 -52.48 -0.41 1.06 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.49 11.29 55.43 0.63 -23.86 16 9 Si 0.90 20.24 29.54 -169.99 -5.02 15.22 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 13 N -0.71 -13.94 4.82 -54.93 -0.26 -14.20 16 14 C 0.53 10.42 4.20 -10.99 -0.05 10.37 16 15 O -0.53 -13.03 13.03 -11.47 -0.15 -13.18 16 16 C -0.11 -1.70 0.52 -155.67 -0.08 -1.78 16 17 C -0.06 -0.72 4.37 -27.88 -0.12 -0.84 16 18 C -0.09 -1.42 4.29 -104.62 -0.45 -1.87 16 19 C -0.09 -1.49 6.50 -39.58 -0.26 -1.75 16 20 C -0.12 -1.86 9.78 -39.58 -0.39 -2.24 16 21 C -0.12 -1.74 10.05 -39.58 -0.40 -2.14 16 22 C -0.12 -1.79 10.05 -39.58 -0.40 -2.19 16 23 C -0.09 -1.32 7.21 -39.58 -0.29 -1.61 16 24 C -0.12 -1.33 6.21 -25.10 -0.16 -1.49 16 25 C 0.11 0.96 7.35 -3.12 -0.02 0.93 16 26 N -0.63 -7.84 3.33 -180.29 -0.60 -8.44 16 27 C 0.10 0.97 11.14 59.85 0.67 1.63 16 28 C 0.54 8.95 5.08 -10.86 -0.06 8.90 16 29 O -0.48 -9.97 14.33 -11.47 -0.16 -10.13 16 30 H 0.04 1.13 7.90 -51.93 -0.41 0.72 16 31 H 0.06 1.32 2.93 -51.93 -0.15 1.17 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.03 0.67 7.35 -51.93 -0.38 0.29 16 34 H 0.10 2.60 5.95 -51.93 -0.31 2.29 16 35 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 36 H 0.39 6.48 7.45 -40.82 -0.30 6.17 16 37 H 0.08 0.80 8.11 -51.93 -0.42 0.38 16 38 H 0.09 1.02 6.87 -51.93 -0.36 0.67 16 39 H 0.13 2.16 6.80 -52.49 -0.36 1.80 16 40 H 0.12 1.72 8.06 -52.48 -0.42 1.29 16 41 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 42 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 43 H 0.11 1.47 7.69 -52.49 -0.40 1.07 16 44 H 0.09 1.10 7.91 -51.93 -0.41 0.69 16 45 H 0.10 0.77 7.90 -51.93 -0.41 0.36 16 46 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.08 0.94 7.53 -51.93 -0.39 0.55 16 49 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 386.57 15.07 5.83 5.83 Total: -1.00 -34.22 386.57 -9.76 -43.98 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: -7.62 Total: 10.79 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -2.39 Total: -6.01 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: -0.24 Total: -46.50 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: -0.31 Total: -23.31 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.22 -9.76 -43.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602137133.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.302 kcal (2) G-P(sol) polarization free energy of solvation -34.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds