Wall clock time and date at job start Wed Apr 1 2020 03:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46905 * 2 1 4 4 H 1.08997 * 109.47350 * 54.99650 * 3 2 1 5 5 C 1.50699 * 109.47024 * 175.00334 * 3 2 1 6 6 H 1.08007 * 119.99924 * 120.00180 * 5 3 2 7 7 C 1.37873 * 120.00114 * 299.99270 * 5 3 2 8 8 N 1.31525 * 119.99854 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00364 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47189 * 90.00332 * 9 7 5 11 11 H 1.48501 * 109.47551 * 210.00210 * 9 7 5 12 12 H 1.48504 * 109.47176 * 330.00154 * 9 7 5 13 13 N 1.46504 * 109.46825 * 294.99733 * 3 2 1 14 14 C 1.34781 * 119.99573 * 85.00155 * 13 3 2 15 15 O 1.21283 * 120.00013 * 3.88896 * 14 13 3 16 16 C 1.50696 * 119.99747 * 183.88665 * 14 13 3 17 17 C 1.53002 * 110.43739 * 49.91131 * 16 14 13 18 18 C 1.50707 * 109.46906 * 68.22396 * 17 16 14 19 19 C 1.38234 * 119.99969 * 263.34441 * 18 17 16 20 20 C 1.38234 * 119.99405 * 179.74688 * 19 18 17 21 21 C 1.38233 * 120.00409 * 0.52525 * 20 19 18 22 22 C 1.38238 * 119.99979 * 359.75284 * 21 20 19 23 23 C 1.38234 * 119.99499 * 83.62248 * 18 17 16 24 24 C 1.54631 * 110.48839 * 287.22951 * 16 14 13 25 25 C 1.54484 * 101.76306 * 216.52395 * 24 16 14 26 26 N 1.46761 * 105.47611 * 25.41436 * 25 24 16 27 27 C 1.46505 * 124.35120 * 163.24838 * 26 25 24 28 28 C 1.34424 * 111.30108 * 342.98523 * 26 25 24 29 29 O 1.21277 * 124.94236 * 180.39047 * 28 26 25 30 30 H 1.08999 * 109.47574 * 299.99922 * 1 2 3 31 31 H 1.08996 * 109.47578 * 60.00519 * 1 2 3 32 32 H 1.09000 * 109.46766 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47574 * 240.00078 * 2 1 3 34 34 H 1.08996 * 109.47578 * 119.99481 * 2 1 3 35 35 H 0.96998 * 119.99917 * 179.97438 * 8 7 5 36 36 H 0.96994 * 120.00639 * 264.99789 * 13 3 2 37 37 H 1.08999 * 109.47744 * 188.22833 * 17 16 14 38 38 H 1.08999 * 109.47131 * 308.22872 * 17 16 14 39 39 H 1.08001 * 120.00133 * 359.97438 * 19 18 17 40 40 H 1.08006 * 119.99601 * 180.29727 * 20 19 18 41 41 H 1.07999 * 120.00281 * 179.76644 * 21 20 19 42 42 H 1.07998 * 120.00014 * 179.97438 * 22 21 20 43 43 H 1.08001 * 120.00501 * 359.97438 * 23 18 17 44 44 H 1.08997 * 110.96681 * 334.63837 * 24 16 14 45 45 H 1.08997 * 110.97386 * 98.40577 * 24 16 14 46 46 H 1.08995 * 110.24778 * 266.41153 * 25 24 16 47 47 H 1.09000 * 110.24533 * 144.41532 * 25 24 16 48 48 H 1.08998 * 109.47063 * 179.72565 * 27 26 25 49 49 H 1.08996 * 109.46712 * 299.72444 * 27 26 25 50 50 H 1.08997 * 109.46700 * 59.72260 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8417 5 6 3.5418 1.4444 0.1237 6 1 4.1471 1.8890 -0.6525 7 6 4.1433 0.8786 1.2279 8 7 3.4062 0.3369 2.1729 9 14 6.0049 0.8815 1.3817 10 1 6.4416 2.1144 2.0847 11 1 6.4396 -0.3095 2.1549 12 1 6.6135 0.8418 0.0277 13 7 1.6523 2.0975 -1.2519 14 6 0.4349 2.6643 -1.3670 15 8 -0.3126 2.6945 -0.4125 16 6 0.0028 3.2606 -2.6818 17 6 0.2377 2.2675 -3.8217 18 6 -0.7062 1.1019 -3.6750 19 6 -0.2793 -0.0600 -3.0597 20 6 -1.1468 -1.1272 -2.9205 21 6 -2.4378 -1.0365 -3.4063 22 6 -2.8630 0.1233 -4.0268 23 6 -1.9972 1.1926 -4.1610 24 6 0.7562 4.5842 -2.9495 25 6 -0.3355 5.4346 -3.6362 26 7 -1.6128 4.8898 -3.1613 27 6 -2.8977 5.5862 -3.2636 28 6 -1.4533 3.6673 -2.6256 29 8 -2.3466 2.9892 -2.1640 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5137 0.8900 35 1 3.8293 -0.0615 2.9495 36 1 2.2717 2.1232 -1.9978 37 1 0.0592 2.7617 -4.7768 38 1 1.2663 1.9089 -3.7850 39 1 0.7308 -0.1326 -2.6844 40 1 -0.8148 -2.0332 -2.4354 41 1 -3.1144 -1.8717 -3.3008 42 1 -3.8714 0.1940 -4.4067 43 1 -2.3294 2.0989 -4.6454 44 1 1.0795 5.0446 -2.0159 45 1 1.6026 4.4231 -3.6170 46 1 -0.2634 5.3375 -4.7194 47 1 -0.2391 6.4800 -3.3433 48 1 -3.6844 4.9610 -2.8416 49 1 -2.8463 6.5260 -2.7139 50 1 -3.1181 5.7898 -4.3115 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602137133.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:16 Heat of formation + Delta-G solvation = -61.252227 kcal Electronic energy + Delta-G solvation = -32812.435663 eV Core-core repulsion = 28803.670176 eV Total energy + Delta-G solvation = -4008.765486 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.40751 -40.01672 -39.78151 -37.45492 -36.89353 -35.48017 -34.14297 -32.80879 -32.39849 -31.66230 -29.49241 -28.73445 -27.77580 -26.34192 -25.02001 -23.52915 -23.38771 -22.32778 -22.04931 -21.11078 -20.21475 -18.83570 -17.89082 -17.68795 -17.26887 -17.14948 -16.78941 -16.38691 -16.18336 -16.01680 -15.80246 -15.43311 -14.94692 -14.88032 -14.67190 -14.36619 -14.15540 -13.97711 -13.86753 -13.59489 -13.50908 -13.33802 -13.27176 -13.13775 -13.03487 -12.92639 -12.81877 -12.75574 -12.66933 -12.27939 -12.12125 -12.01614 -11.82756 -11.67354 -11.52723 -11.02295 -10.68842 -10.57910 -10.43697 -9.73331 -9.62808 -9.55368 -9.42306 -8.12154 -6.29871 0.50515 0.60439 1.47108 1.47413 1.57060 1.59055 1.85502 2.09612 2.40311 2.71396 2.90683 3.17462 3.22437 3.47441 3.86051 3.89325 3.97989 4.00784 4.17030 4.19123 4.28360 4.42249 4.44345 4.48683 4.51851 4.61545 4.66145 4.68053 4.72496 4.78807 4.82304 4.86074 4.89158 4.99305 5.08009 5.11990 5.20999 5.22478 5.30980 5.48474 5.59532 5.62666 5.66603 5.67495 5.69010 5.74170 5.83034 5.96063 6.12508 6.19752 6.20874 6.79126 7.01286 7.28674 7.37913 7.64619 8.93124 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012017 B = 0.004428 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.493680 B = 6322.392057 C = 7697.841465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.111 4.111 3 C 0.284 3.716 4 H -0.011 1.011 5 C -0.541 4.541 6 H 0.078 0.922 7 C 0.014 3.986 8 N -0.918 5.918 9 Si 0.970 3.030 10 H -0.280 1.280 11 H -0.289 1.289 12 H -0.255 1.255 13 N -0.696 5.696 14 C 0.524 3.476 15 O -0.583 6.583 16 C -0.109 4.109 17 C -0.056 4.056 18 C -0.101 4.101 19 C -0.113 4.113 20 C -0.137 4.137 21 C -0.129 4.129 22 C -0.133 4.133 23 C -0.094 4.094 24 C -0.121 4.121 25 C 0.106 3.894 26 N -0.629 5.629 27 C 0.093 3.907 28 C 0.529 3.471 29 O -0.541 6.541 30 H 0.006 0.994 31 H 0.069 0.931 32 H 0.034 0.966 33 H 0.045 0.955 34 H 0.066 0.934 35 H 0.262 0.738 36 H 0.403 0.597 37 H 0.122 0.878 38 H 0.103 0.897 39 H 0.115 0.885 40 H 0.121 0.879 41 H 0.136 0.864 42 H 0.134 0.866 43 H 0.119 0.881 44 H 0.071 0.929 45 H 0.141 0.859 46 H 0.112 0.888 47 H 0.102 0.898 48 H 0.055 0.945 49 H 0.073 0.927 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.955 8.600 -20.646 23.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.150 4.150 3 C 0.180 3.820 4 H 0.007 0.993 5 C -0.579 4.579 6 H 0.096 0.904 7 C -0.186 4.186 8 N -0.557 5.557 9 Si 0.794 3.206 10 H -0.206 1.206 11 H -0.215 1.215 12 H -0.179 1.179 13 N -0.345 5.345 14 C 0.309 3.691 15 O -0.463 6.463 16 C -0.116 4.116 17 C -0.093 4.093 18 C -0.101 4.101 19 C -0.131 4.131 20 C -0.155 4.155 21 C -0.146 4.146 22 C -0.151 4.151 23 C -0.112 4.112 24 C -0.159 4.159 25 C -0.016 4.016 26 N -0.364 5.364 27 C -0.048 4.048 28 C 0.315 3.685 29 O -0.416 6.416 30 H 0.025 0.975 31 H 0.087 0.913 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.239 0.761 37 H 0.140 0.860 38 H 0.122 0.878 39 H 0.133 0.867 40 H 0.139 0.861 41 H 0.154 0.846 42 H 0.152 0.848 43 H 0.137 0.863 44 H 0.090 0.910 45 H 0.159 0.841 46 H 0.130 0.870 47 H 0.120 0.880 48 H 0.074 0.926 49 H 0.092 0.908 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.022 8.214 -19.553 22.340 hybrid contribution 0.767 -0.381 1.102 1.396 sum -6.255 7.832 -18.451 20.998 Atomic orbital electron populations 1.21904 0.97633 0.98601 1.00763 1.21710 0.92936 0.99286 1.01098 1.18286 0.93654 0.88824 0.81226 0.99320 1.21573 0.91128 1.38593 1.06642 0.90394 1.25787 1.03194 0.94478 0.95105 1.70087 1.37081 1.38562 1.09935 0.85383 0.79253 0.77151 0.78764 1.20609 1.21501 1.17900 1.46079 1.14985 1.55972 1.17510 1.20248 0.81800 0.77848 0.89169 1.90726 1.54249 1.59548 1.41786 1.21697 0.95841 0.99209 0.94807 1.20676 0.99943 0.91751 0.96961 1.19874 0.95600 0.95383 0.99264 1.21176 1.00180 0.93777 0.97936 1.21267 0.94690 0.99221 1.00296 1.21337 0.96009 0.98776 0.98518 1.21283 1.00013 0.93637 1.00120 1.20958 0.93046 0.98014 0.99231 1.22898 0.99334 0.90422 1.03216 1.22372 0.79634 0.98945 1.00612 1.48238 1.10374 1.17233 1.60575 1.21664 0.82971 0.96761 1.03418 1.20282 0.89774 0.81797 0.76697 1.90711 1.47830 1.57364 1.45704 0.97495 0.91252 0.94663 0.93602 0.91537 0.92843 0.76097 0.86011 0.87833 0.86711 0.86083 0.84639 0.84795 0.86324 0.91047 0.84076 0.87025 0.87982 0.92553 0.90816 0.89016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.47 7.78 71.98 0.56 -5.91 16 2 C -0.11 -5.58 5.24 30.59 0.16 -5.42 16 3 C 0.28 14.47 2.25 44.25 0.10 14.57 16 4 H -0.01 -0.70 7.52 -2.39 -0.02 -0.71 16 5 C -0.54 -27.81 8.73 25.60 0.22 -27.59 16 6 H 0.08 3.65 7.74 -2.91 -0.02 3.62 16 7 C 0.01 0.75 5.29 84.65 0.45 1.20 16 8 N -0.92 -53.05 11.29 21.45 0.24 -52.81 16 9 Si 0.97 41.42 29.54 68.60 2.03 43.45 16 10 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 11 H -0.29 -12.42 7.11 99.48 0.71 -11.72 16 12 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 13 N -0.70 -27.69 4.82 -446.08 -2.15 -29.84 16 14 C 0.52 21.08 4.20 87.66 0.37 21.45 16 15 O -0.58 -30.61 13.03 13.24 0.17 -30.43 16 16 C -0.11 -3.04 0.52 -52.93 -0.03 -3.06 16 17 C -0.06 -1.25 4.37 29.85 0.13 -1.12 16 18 C -0.10 -2.97 4.29 -19.86 -0.09 -3.06 16 19 C -0.11 -3.69 6.50 22.27 0.14 -3.54 16 20 C -0.14 -4.34 9.78 22.27 0.22 -4.12 16 21 C -0.13 -3.70 10.05 22.27 0.22 -3.47 16 22 C -0.13 -3.72 10.05 22.27 0.22 -3.50 16 23 C -0.09 -2.70 7.21 22.27 0.16 -2.54 16 24 C -0.12 -2.16 6.21 31.65 0.20 -1.96 16 25 C 0.11 1.36 7.35 86.83 0.64 2.00 16 26 N -0.63 -13.77 3.33 -842.90 -2.81 -16.58 16 27 C 0.09 1.60 11.14 127.77 1.42 3.02 16 28 C 0.53 16.91 5.08 87.90 0.45 17.36 16 29 O -0.54 -22.73 14.33 13.26 0.19 -22.54 16 30 H 0.01 0.33 7.90 -2.39 -0.02 0.31 16 31 H 0.07 3.27 2.93 -2.39 -0.01 3.26 16 32 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.05 2.11 7.35 -2.39 -0.02 2.09 16 34 H 0.07 3.77 5.95 -2.39 -0.01 3.75 16 35 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 36 H 0.40 12.98 7.45 -92.71 -0.69 12.29 16 37 H 0.12 1.77 8.11 -2.39 -0.02 1.75 16 38 H 0.10 2.01 6.87 -2.39 -0.02 2.00 16 39 H 0.11 3.93 6.80 -2.91 -0.02 3.91 16 40 H 0.12 3.60 8.06 -2.91 -0.02 3.58 16 41 H 0.14 3.18 8.06 -2.91 -0.02 3.15 16 42 H 0.13 3.07 8.06 -2.91 -0.02 3.05 16 43 H 0.12 3.03 7.69 -2.91 -0.02 3.00 16 44 H 0.07 1.58 7.91 -2.39 -0.02 1.56 16 45 H 0.14 1.35 7.90 -2.39 -0.02 1.33 16 46 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 47 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.06 1.27 7.53 -2.39 -0.02 1.26 16 49 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 50 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -82.21 386.57 3.48 -78.73 By element: Atomic # 1 Polarization: 35.44 SS G_CDS: 0.26 Total: 35.70 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: 5.55 Total: -5.69 kcal Atomic # 7 Polarization: -94.50 SS G_CDS: -4.72 Total: -99.22 kcal Atomic # 8 Polarization: -53.33 SS G_CDS: 0.36 Total: -52.97 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Total: -82.21 3.48 -78.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602137133.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.478 kcal (2) G-P(sol) polarization free energy of solvation -82.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds