Wall clock time and date at job start Wed Apr 1 2020 03:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47384 * 2 1 4 4 H 1.09005 * 109.46631 * 304.33638 * 3 2 1 5 5 C 1.50700 * 109.47396 * 184.33870 * 3 2 1 6 6 H 1.07992 * 119.99833 * 245.62586 * 5 3 2 7 7 C 1.37876 * 119.99697 * 65.62982 * 5 3 2 8 8 N 1.31515 * 120.00183 * 9.04796 * 7 5 3 9 9 Si 1.86808 * 119.99690 * 189.05106 * 7 5 3 10 10 H 1.48500 * 109.46778 * 94.98718 * 9 7 5 11 11 H 1.48500 * 109.47084 * 214.98546 * 9 7 5 12 12 H 1.48492 * 109.46849 * 334.98998 * 9 7 5 13 13 N 1.46496 * 109.47376 * 64.33440 * 3 2 1 14 14 C 1.34775 * 120.00345 * 275.00572 * 13 3 2 15 15 O 1.21282 * 119.99785 * 3.99446 * 14 13 3 16 16 C 1.50700 * 120.00497 * 183.99975 * 14 13 3 17 17 H 1.09004 * 109.46470 * 323.77742 * 16 14 13 18 18 C 1.53007 * 109.47367 * 83.77283 * 16 14 13 19 19 C 1.52993 * 109.47247 * 179.97438 * 18 16 14 20 20 C 1.53003 * 109.46799 * 299.96621 * 18 16 14 21 21 N 1.46499 * 109.47510 * 203.77661 * 16 14 13 22 22 C 1.46732 * 125.62235 * 119.99845 * 21 16 14 23 23 C 1.50832 * 106.24991 * 180.02562 * 22 21 16 24 24 C 1.37575 * 133.23646 * 180.02562 * 23 22 21 25 25 C 1.38478 * 119.95075 * 179.97438 * 24 23 22 26 26 C 1.38381 * 120.19110 * 359.97438 * 25 24 23 27 27 C 1.37937 * 120.32039 * 0.02562 * 26 25 24 28 28 C 1.39619 * 119.83001 * 359.97438 * 27 26 25 29 29 C 1.34417 * 125.62298 * 300.00096 * 21 16 14 30 30 O 1.21554 * 124.85725 * 0.02562 * 29 21 16 31 31 H 1.09001 * 109.47383 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46920 * 300.00022 * 1 2 3 33 33 H 1.08995 * 109.47110 * 60.00434 * 1 2 3 34 34 H 1.08998 * 109.47155 * 239.99439 * 2 1 3 35 35 H 1.09008 * 109.46929 * 119.99340 * 2 1 3 36 36 H 0.97004 * 120.00055 * 180.02562 * 8 7 5 37 37 H 0.97005 * 119.99830 * 95.00583 * 13 3 2 38 38 H 1.09000 * 109.46763 * 59.96480 * 18 16 14 39 39 H 1.09007 * 109.47208 * 59.99891 * 19 18 16 40 40 H 1.09000 * 109.47249 * 179.97438 * 19 18 16 41 41 H 1.09001 * 109.47061 * 300.00129 * 19 18 16 42 42 H 1.09007 * 109.47306 * 66.99294 * 20 18 16 43 43 H 1.08998 * 109.46823 * 186.98553 * 20 18 16 44 44 H 1.08998 * 109.47263 * 306.98585 * 20 18 16 45 45 H 1.09000 * 110.10479 * 60.80318 * 22 21 16 46 46 H 1.09003 * 110.09699 * 299.19117 * 22 21 16 47 47 H 1.07990 * 120.02692 * 359.97438 * 24 23 22 48 48 H 1.08006 * 119.90302 * 180.27373 * 25 24 23 49 49 H 1.07995 * 119.84124 * 179.97438 * 26 25 24 50 50 H 1.08003 * 120.08746 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6146 1.9782 -0.8486 5 6 3.5432 1.4438 -0.1075 6 1 4.1429 1.8087 0.7132 7 6 4.1527 0.9793 -1.2536 8 7 3.4300 0.7028 -2.3170 9 14 6.0053 0.7426 -1.2960 10 1 6.3312 -0.6700 -0.9746 11 1 6.5155 1.0724 -2.6510 12 1 6.6415 1.6373 -0.2961 13 7 1.6389 2.1023 1.2449 14 6 0.4204 2.6696 1.3446 15 8 -0.3709 2.5714 0.4307 16 6 0.0411 3.4262 2.5915 17 1 0.4766 2.9344 3.4614 18 6 0.5686 4.8595 2.4988 19 6 0.1830 5.6277 3.7645 20 6 2.0923 4.8342 2.3621 21 7 -1.4177 3.4503 2.7235 22 6 -2.1833 2.9006 3.8480 23 6 -3.6361 3.1599 3.5364 24 6 -4.8072 2.8810 4.2024 25 6 -6.0217 3.2532 3.6510 26 6 -6.0614 3.9059 2.4314 27 6 -4.8931 4.1904 1.7555 28 6 -3.6646 3.8183 2.3049 29 6 -2.2756 3.9797 1.8343 30 8 -1.9532 4.5142 0.7912 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5137 -0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 3.8588 0.3756 -3.1233 37 1 2.2502 2.1309 1.9975 38 1 0.1338 5.3510 1.6286 39 1 0.6180 5.1360 4.6347 40 1 0.5592 6.6486 3.6986 41 1 -0.9025 5.6456 3.8621 42 1 2.3637 4.3972 1.4010 43 1 2.4792 5.8515 2.4207 44 1 2.5195 4.2361 3.1669 45 1 -1.9029 3.4033 4.7736 46 1 -2.0048 1.8287 3.9343 47 1 -4.7794 2.3721 5.1545 48 1 -6.9403 3.0378 4.1766 49 1 -7.0117 4.1933 2.0064 50 1 -4.9284 4.6996 0.8037 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907389267.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:59 Heat of formation + Delta-G solvation = -34.084578 kcal Electronic energy + Delta-G solvation = -31670.680722 eV Core-core repulsion = 27663.093314 eV Total energy + Delta-G solvation = -4007.587409 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.26852 -39.33402 -37.82352 -36.23925 -35.16467 -34.87326 -32.26172 -31.28847 -31.12080 -30.94460 -27.82510 -26.93833 -26.78552 -26.37571 -23.37990 -22.81653 -21.87861 -20.95702 -20.58440 -19.41090 -19.15485 -17.49581 -16.90680 -16.32001 -16.23907 -15.99570 -15.34616 -15.17687 -14.73057 -14.54124 -14.33387 -14.28748 -13.81930 -13.46402 -13.36835 -13.28834 -13.14611 -12.81210 -12.63957 -12.54649 -12.36840 -12.11487 -12.00524 -11.79980 -11.51525 -11.35364 -11.24470 -11.04286 -10.99842 -10.93442 -10.72782 -10.70382 -10.32213 -10.17342 -9.65999 -9.50865 -9.33586 -9.12826 -9.06210 -8.95430 -8.45580 -8.30048 -7.74827 -6.11618 -4.17257 0.71506 1.10319 2.70943 2.95734 3.25507 3.32760 3.34362 3.44312 3.79387 3.96671 4.18163 4.36479 4.44606 4.69377 4.76603 4.88538 4.94633 5.06792 5.16372 5.18319 5.21372 5.22338 5.27247 5.32077 5.51545 5.62093 5.65247 5.74468 5.76115 5.87709 5.97313 6.07799 6.09668 6.14831 6.19564 6.37822 6.40218 6.43164 6.51874 6.62753 6.64126 6.67528 7.01812 7.19825 7.21627 7.37452 7.47519 7.64975 7.74674 7.88805 8.11093 8.44146 8.72150 8.83763 9.20773 9.48999 10.96442 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017186 B = 0.003133 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.883353 B = 8935.577466 C = 9730.518955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.118 4.118 3 C 0.272 3.728 4 H 0.054 0.946 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.069 3.931 8 N -0.879 5.879 9 Si 0.896 3.104 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.273 1.273 13 N -0.708 5.708 14 C 0.487 3.513 15 O -0.514 6.514 16 C 0.157 3.843 17 H 0.103 0.897 18 C -0.103 4.103 19 C -0.139 4.139 20 C -0.154 4.154 21 N -0.603 5.603 22 C 0.144 3.856 23 C -0.085 4.085 24 C -0.104 4.104 25 C -0.096 4.096 26 C -0.128 4.128 27 C -0.050 4.050 28 C -0.145 4.145 29 C 0.562 3.438 30 O -0.488 6.488 31 H 0.020 0.980 32 H 0.040 0.960 33 H 0.051 0.949 34 H 0.078 0.922 35 H 0.033 0.967 36 H 0.264 0.736 37 H 0.385 0.615 38 H 0.090 0.910 39 H 0.054 0.946 40 H 0.057 0.943 41 H 0.051 0.949 42 H 0.076 0.924 43 H 0.059 0.941 44 H 0.056 0.944 45 H 0.093 0.907 46 H 0.092 0.908 47 H 0.129 0.871 48 H 0.130 0.870 49 H 0.130 0.870 50 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.016 5.765 17.846 23.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.157 4.157 3 C 0.170 3.830 4 H 0.072 0.928 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.515 5.515 9 Si 0.723 3.277 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.357 5.357 14 C 0.269 3.731 15 O -0.389 6.389 16 C 0.051 3.949 17 H 0.120 0.880 18 C -0.123 4.123 19 C -0.196 4.196 20 C -0.211 4.211 21 N -0.337 5.337 22 C 0.021 3.979 23 C -0.086 4.086 24 C -0.123 4.123 25 C -0.114 4.114 26 C -0.146 4.146 27 C -0.069 4.069 28 C -0.148 4.148 29 C 0.349 3.651 30 O -0.361 6.361 31 H 0.039 0.961 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.096 0.904 35 H 0.051 0.949 36 H 0.074 0.926 37 H 0.218 0.782 38 H 0.109 0.891 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.095 0.905 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.111 0.889 46 H 0.110 0.890 47 H 0.147 0.853 48 H 0.148 0.852 49 H 0.148 0.852 50 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -14.263 5.916 16.347 22.487 hybrid contribution 1.270 -0.384 0.330 1.368 sum -12.993 5.532 16.677 21.853 Atomic orbital electron populations 1.21842 0.98017 0.97786 1.01611 1.21843 0.92906 1.00006 1.00982 1.18754 0.94060 0.88719 0.81461 0.92779 1.21180 0.90526 1.43886 1.01757 0.92087 1.24888 0.98349 0.95238 0.95018 1.69995 1.35665 1.43678 1.02198 0.86528 0.85210 0.78456 0.77471 1.20620 1.21197 1.19826 1.46509 1.14629 1.56119 1.18476 1.20430 0.83413 0.80426 0.88784 1.90764 1.49837 1.58764 1.39507 1.21015 0.77936 0.97428 0.98565 0.87957 1.21386 0.97086 0.93493 1.00344 1.21774 1.01142 0.99966 0.96724 1.21947 0.93327 1.02314 1.03556 1.47491 1.04941 1.59549 1.21721 1.20435 0.86925 1.00178 0.90348 1.20483 0.94842 0.97821 0.95482 1.20267 0.90490 1.01229 1.00268 1.21269 0.97545 0.97063 0.95521 1.21113 0.98028 0.99913 0.95586 1.20903 0.90210 0.96462 0.99317 1.20607 0.94748 1.02512 0.96923 1.18028 0.84863 0.78902 0.83275 1.90806 1.81562 1.41955 1.21805 0.96138 0.94061 0.93023 0.90379 0.94867 0.92627 0.78208 0.89124 0.92737 0.92401 0.92961 0.90489 0.92167 0.92526 0.88924 0.89004 0.85310 0.85224 0.85204 0.85085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.46 37.16 0.31 -2.78 16 2 C -0.12 -2.86 5.50 -26.73 -0.15 -3.01 16 3 C 0.27 6.80 2.11 -69.09 -0.15 6.66 16 4 H 0.05 1.62 7.58 -51.93 -0.39 1.23 16 5 C -0.54 -13.97 8.66 -34.44 -0.30 -14.27 16 6 H 0.06 1.51 7.73 -52.49 -0.41 1.11 16 7 C 0.07 1.86 5.17 -17.82 -0.09 1.77 16 8 N -0.88 -25.11 12.15 55.43 0.67 -24.43 16 9 Si 0.90 20.63 29.55 -169.99 -5.02 15.61 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 13 N -0.71 -14.29 3.80 -54.93 -0.21 -14.50 16 14 C 0.49 9.72 5.06 -10.99 -0.06 9.66 16 15 O -0.51 -12.57 10.95 -15.88 -0.17 -12.74 16 16 C 0.16 2.33 2.31 -69.08 -0.16 2.17 16 17 H 0.10 1.18 8.10 -51.93 -0.42 0.76 16 18 C -0.10 -1.46 2.38 -90.62 -0.22 -1.68 16 19 C -0.14 -1.51 9.03 37.15 0.34 -1.18 16 20 C -0.15 -2.07 8.17 37.16 0.30 -1.77 16 21 N -0.60 -8.83 2.02 -169.85 -0.34 -9.17 16 22 C 0.14 1.50 7.36 -5.00 -0.04 1.46 16 23 C -0.09 -0.94 6.38 -104.26 -0.66 -1.61 16 24 C -0.10 -0.88 10.03 -39.73 -0.40 -1.28 16 25 C -0.10 -0.75 10.05 -39.44 -0.40 -1.15 16 26 C -0.13 -1.16 10.02 -39.64 -0.40 -1.56 16 27 C -0.05 -0.61 10.10 -39.18 -0.40 -1.00 16 28 C -0.14 -2.05 6.26 -105.05 -0.66 -2.71 16 29 C 0.56 9.89 6.78 -12.63 -0.09 9.80 16 30 O -0.49 -10.74 14.89 -16.11 -0.24 -10.98 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.04 0.92 5.57 -51.93 -0.29 0.63 16 33 H 0.05 1.29 7.76 -51.93 -0.40 0.89 16 34 H 0.08 2.09 6.81 -51.93 -0.35 1.73 16 35 H 0.03 0.75 8.14 -51.92 -0.42 0.33 16 36 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 37 H 0.39 6.67 8.05 -40.82 -0.33 6.34 16 38 H 0.09 1.62 6.91 -51.93 -0.36 1.26 16 39 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.05 0.59 7.60 -51.93 -0.39 0.20 16 42 H 0.08 1.30 6.76 -51.93 -0.35 0.95 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 47 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 48 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 49 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 50 H 0.13 1.56 8.06 -52.48 -0.42 1.14 16 LS Contribution 397.06 15.07 5.98 5.98 Total: -1.00 -34.46 397.06 -10.43 -44.89 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -7.91 Total: 7.80 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -3.19 Total: -2.46 kcal Atomic # 7 Polarization: -48.22 SS G_CDS: 0.12 Total: -48.10 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -0.41 Total: -23.72 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.46 -10.43 -44.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907389267.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.805 kcal (2) G-P(sol) polarization free energy of solvation -34.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds