Wall clock time and date at job start Wed Apr 1 2020 03:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47053 * 2 1 4 4 H 1.09001 * 109.47072 * 55.00554 * 3 2 1 5 5 C 1.53006 * 109.47045 * 175.00130 * 3 2 1 6 6 O 1.42897 * 109.47564 * 295.00445 * 3 2 1 7 7 C 1.35647 * 117.00393 * 154.00823 * 6 3 2 8 8 C 1.38706 * 120.14862 * 4.95351 * 7 6 3 9 9 C 1.38063 * 120.08397 * 179.79242 * 8 7 6 10 10 C 1.38545 * 120.39073 * 0.46869 * 9 8 7 11 11 C 1.37789 * 120.29890 * 359.78463 * 10 9 8 12 12 C 1.39708 * 119.90783 * 359.97438 * 11 10 9 13 13 C 1.47536 * 120.19101 * 180.02562 * 12 11 10 14 14 O 1.21593 * 120.00063 * 138.20466 * 13 12 11 15 15 N 1.34779 * 120.00365 * 318.21271 * 13 12 11 16 16 C 1.47863 * 126.94051 * 354.73315 * 15 13 12 17 17 C 1.56021 * 105.10396 * 181.98289 * 16 15 13 18 18 H 1.09001 * 116.24788 * 159.68054 * 17 16 15 19 19 C 1.57078 * 99.60555 * 32.81004 * 17 16 15 20 20 C 1.49284 * 126.94626 * 174.42779 * 15 13 12 21 21 H 1.08995 * 116.15422 * 15.85866 * 20 15 13 22 22 C 1.55487 * 104.35190 * 246.77422 * 20 15 13 23 23 N 1.47868 * 105.17216 * 288.90284 * 22 20 15 24 24 C 1.36929 * 126.94283 * 181.92142 * 23 22 20 25 25 H 1.08008 * 120.00093 * 179.97438 * 24 23 22 26 26 C 1.38806 * 120.00372 * 0.02562 * 24 23 22 27 27 N 1.31621 * 120.00073 * 359.97438 * 26 24 23 28 28 Si 1.86806 * 120.00195 * 180.02562 * 26 24 23 29 29 H 1.48503 * 109.47401 * 89.99740 * 28 26 24 30 30 H 1.48507 * 109.46780 * 209.99629 * 28 26 24 31 31 H 1.48503 * 109.46829 * 329.99307 * 28 26 24 32 32 H 1.09004 * 109.46761 * 299.99461 * 1 2 3 33 33 H 1.08999 * 109.46909 * 180.02562 * 1 2 3 34 34 H 1.08994 * 109.47496 * 59.99654 * 1 2 3 35 35 H 1.08994 * 109.47496 * 120.00346 * 2 1 3 36 36 H 1.09004 * 109.46761 * 240.00539 * 2 1 3 37 37 H 1.09001 * 109.46838 * 180.02562 * 5 3 2 38 38 H 1.09001 * 109.47022 * 300.00187 * 5 3 2 39 39 H 1.09001 * 109.46839 * 60.00282 * 5 3 2 40 40 H 1.08001 * 119.95863 * 0.02562 * 8 7 6 41 41 H 1.07997 * 119.80381 * 180.21297 * 9 8 7 42 42 H 1.07999 * 119.85312 * 179.76962 * 10 9 8 43 43 H 1.07998 * 120.04799 * 179.97438 * 11 10 9 44 44 H 1.09003 * 110.32032 * 300.89286 * 16 15 13 45 45 H 1.09003 * 110.31425 * 63.07969 * 16 15 13 46 46 H 1.09006 * 112.37227 * 64.27353 * 19 17 16 47 47 H 1.08999 * 112.36975 * 191.71408 * 19 17 16 48 48 H 1.09001 * 110.34838 * 169.94373 * 22 20 15 49 49 H 1.08994 * 110.21392 * 47.80115 * 22 20 15 50 50 H 0.97000 * 120.00002 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5648 1.4443 0.1257 6 8 1.6619 2.0815 -1.2209 7 6 1.5321 3.4315 -1.1951 8 6 1.8618 4.1412 -0.0499 9 6 1.7333 5.5156 -0.0264 10 6 1.2660 6.1950 -1.1398 11 6 0.9289 5.5054 -2.2841 12 6 1.0588 4.1149 -2.3232 13 6 0.7002 3.3704 -3.5454 14 8 1.4059 2.4582 -3.9307 15 7 -0.4095 3.7013 -4.2350 16 6 -1.4282 4.7023 -3.8521 17 6 -2.5060 4.6368 -4.9783 18 1 -3.4903 5.0321 -4.7271 19 6 -2.4162 3.1106 -5.3386 20 6 -0.8553 3.1359 -5.5427 21 1 -0.3774 2.2065 -5.8522 22 6 -0.7408 4.3263 -6.5364 23 7 -1.8331 5.2498 -6.1615 24 6 -2.1609 6.4289 -6.7756 25 1 -2.9866 7.0190 -6.4059 26 6 -1.4330 6.8654 -7.8739 27 7 -0.4271 6.1461 -8.3248 28 14 -1.8799 8.4744 -8.7112 29 1 -1.1244 9.5869 -8.0811 30 1 -1.5333 8.3950 -10.1531 31 1 -3.3371 8.7203 -8.5651 32 1 -0.3633 0.5138 0.8901 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3634 0.5138 -0.8899 35 1 1.8934 -0.5138 0.8899 36 1 1.8933 -0.5138 -0.8901 37 1 3.9281 2.4720 0.1261 38 1 3.8532 0.9569 1.0571 39 1 3.9994 0.9053 -0.7162 40 1 2.2232 3.6184 0.8233 41 1 1.9946 6.0640 0.8665 42 1 1.1654 7.2699 -1.1107 43 1 0.5647 6.0390 -3.1495 44 1 -1.8701 4.4437 -2.8898 45 1 -0.9844 5.6970 -3.8104 46 1 -2.7188 2.4702 -4.5100 47 1 -2.9500 2.8692 -6.2578 48 1 -0.8739 3.9789 -7.5610 49 1 0.2255 4.8180 -6.4252 50 1 0.0818 6.4514 -9.0921 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032653635.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:30 Heat of formation + Delta-G solvation = 12.277672 kcal Electronic energy + Delta-G solvation = -31470.470911 eV Core-core repulsion = 27464.893920 eV Total energy + Delta-G solvation = -4005.576991 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.66795 -39.75047 -37.98423 -37.17054 -34.31391 -33.57746 -31.95226 -30.82584 -30.12514 -29.76093 -28.86171 -28.45706 -25.22006 -24.32059 -24.18677 -23.05150 -22.65633 -20.78311 -20.57436 -19.78814 -18.86144 -18.03763 -17.30947 -16.34968 -16.24003 -15.67562 -15.29613 -15.19729 -15.03945 -14.50859 -14.34043 -14.00800 -13.93926 -13.75694 -13.56784 -13.22822 -13.05867 -12.87759 -12.44938 -12.17563 -12.05950 -11.93731 -11.83611 -11.76324 -11.61212 -11.35513 -11.26963 -11.13737 -10.97580 -10.84110 -10.80256 -10.75108 -10.67044 -10.54619 -10.20225 -10.04612 -9.61554 -9.36413 -8.97546 -8.68526 -8.19848 -7.87794 -6.90979 -5.75363 -3.09987 1.05833 1.42266 3.10468 3.19484 3.37565 3.42425 3.45095 3.46491 3.89477 4.42870 4.43139 4.63957 4.70489 4.75494 4.85484 4.97302 5.04453 5.11927 5.20842 5.23410 5.31342 5.33419 5.35751 5.40522 5.44836 5.57662 5.59011 5.66840 5.69713 5.74389 5.83824 5.85042 5.91437 5.96132 6.00225 6.09658 6.16573 6.26107 6.31091 6.36513 6.46063 6.48008 6.56550 6.63851 6.74494 6.77153 7.41778 7.44661 7.52705 7.73511 8.10928 8.19280 8.72722 9.11491 9.72407 10.42082 11.36527 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016251 B = 0.003174 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.523494 B = 8819.880346 C = 9623.243048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C 0.076 3.924 4 H 0.072 0.928 5 C -0.179 4.179 6 O -0.283 6.283 7 C 0.178 3.822 8 C -0.225 4.225 9 C -0.064 4.064 10 C -0.166 4.166 11 C -0.046 4.046 12 C -0.155 4.155 13 C 0.579 3.421 14 O -0.539 6.539 15 N -0.603 5.603 16 C 0.083 3.917 17 C 0.140 3.860 18 H 0.106 0.894 19 C -0.150 4.150 20 C 0.100 3.900 21 H 0.113 0.887 22 C 0.173 3.827 23 N -0.597 5.597 24 C -0.231 4.231 25 H 0.080 0.920 26 C -0.006 4.006 27 N -0.919 5.919 28 Si 0.912 3.088 29 H -0.289 1.289 30 H -0.291 1.291 31 H -0.281 1.281 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.131 0.869 41 H 0.125 0.875 42 H 0.128 0.872 43 H 0.142 0.858 44 H 0.052 0.948 45 H 0.073 0.927 46 H 0.065 0.935 47 H 0.083 0.917 48 H 0.056 0.944 49 H 0.047 0.953 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.171 -7.261 20.181 21.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C 0.020 3.980 4 H 0.090 0.910 5 C -0.237 4.237 6 O -0.195 6.195 7 C 0.131 3.869 8 C -0.243 4.243 9 C -0.082 4.082 10 C -0.184 4.184 11 C -0.064 4.064 12 C -0.159 4.159 13 C 0.367 3.633 14 O -0.417 6.417 15 N -0.337 5.337 16 C -0.042 4.042 17 C 0.031 3.969 18 H 0.124 0.876 19 C -0.189 4.189 20 C -0.002 4.002 21 H 0.131 0.869 22 C 0.048 3.952 23 N -0.322 5.322 24 C -0.359 4.359 25 H 0.098 0.902 26 C -0.203 4.203 27 N -0.565 5.565 28 Si 0.742 3.258 29 H -0.216 1.216 30 H -0.217 1.217 31 H -0.207 1.207 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.149 0.851 41 H 0.143 0.857 42 H 0.146 0.854 43 H 0.159 0.841 44 H 0.070 0.930 45 H 0.091 0.909 46 H 0.083 0.917 47 H 0.102 0.898 48 H 0.074 0.926 49 H 0.065 0.935 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.687 -7.756 19.621 21.269 hybrid contribution 0.070 1.132 -0.210 1.154 sum 2.757 -6.624 19.412 20.695 Atomic orbital electron populations 1.21752 0.95102 1.01878 1.02357 1.21616 0.96906 0.93874 1.03151 1.22566 0.95145 0.94193 0.86081 0.91003 1.22366 0.95231 1.03168 1.02915 1.86293 1.82445 1.16233 1.34552 1.18913 0.92244 0.82983 0.92798 1.21176 1.09578 0.95425 0.98150 1.21040 0.95672 0.93382 0.98099 1.20997 1.03670 1.00313 0.93442 1.21460 0.94435 0.91981 0.98512 1.19352 1.08519 0.93757 0.94230 1.17545 0.80163 0.82925 0.82644 1.90755 1.51214 1.30322 1.69391 1.49083 1.22082 1.40128 1.22409 1.23397 0.90650 0.91929 0.98263 1.23190 0.94344 0.91615 0.87750 0.87638 1.24190 0.95519 0.97928 1.01310 1.24294 0.93397 0.98659 0.83839 0.86890 1.21835 0.92029 0.86826 0.94476 1.45248 1.33772 1.22072 1.31075 1.19038 1.12512 0.95660 1.08693 0.90179 1.24815 0.97985 0.98864 0.98594 1.69923 1.21580 1.38169 1.26839 0.86132 0.77742 0.83102 0.78813 1.21642 1.21721 1.20662 0.93010 0.92446 0.91790 0.90240 0.90510 0.91830 0.91173 0.91119 0.85102 0.85737 0.85413 0.84080 0.92962 0.90938 0.91670 0.89849 0.92588 0.93523 0.93602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.81 37.16 0.36 -1.13 16 2 C -0.12 -1.11 5.64 -26.73 -0.15 -1.26 16 3 C 0.08 0.81 2.22 -26.73 -0.06 0.75 16 4 H 0.07 0.66 6.22 -51.93 -0.32 0.33 16 5 C -0.18 -1.65 9.21 37.16 0.34 -1.31 16 6 O -0.28 -4.31 8.16 -33.51 -0.27 -4.58 16 7 C 0.18 2.71 6.59 -38.70 -0.25 2.45 16 8 C -0.22 -2.66 8.29 -39.47 -0.33 -2.99 16 9 C -0.06 -0.69 10.03 -39.53 -0.40 -1.09 16 10 C -0.17 -2.04 10.02 -39.63 -0.40 -2.44 16 11 C -0.05 -0.69 8.53 -39.20 -0.33 -1.03 16 12 C -0.15 -2.66 5.49 -104.84 -0.58 -3.24 16 13 C 0.58 11.77 7.27 -12.47 -0.09 11.68 16 14 O -0.54 -12.56 16.56 -9.58 -0.16 -12.71 16 15 N -0.60 -11.78 2.95 -158.10 -0.47 -12.25 16 16 C 0.08 1.46 5.25 -1.68 -0.01 1.45 16 17 C 0.14 2.62 5.53 -62.55 -0.35 2.27 16 18 H 0.11 1.77 8.14 -51.93 -0.42 1.34 16 19 C -0.15 -2.61 6.83 -22.10 -0.15 -2.77 16 20 C 0.10 2.02 5.24 -62.65 -0.33 1.69 16 21 H 0.11 2.24 8.03 -51.93 -0.42 1.82 16 22 C 0.17 4.20 4.75 -1.97 -0.01 4.19 16 23 N -0.60 -14.31 3.02 -156.68 -0.47 -14.78 16 24 C -0.23 -6.09 10.37 -15.07 -0.16 -6.25 16 25 H 0.08 2.01 7.83 -52.48 -0.41 1.60 16 26 C -0.01 -0.16 5.49 -17.43 -0.10 -0.25 16 27 N -0.92 -26.69 10.56 55.49 0.59 -26.11 16 28 Si 0.91 21.60 29.55 -169.99 -5.02 16.57 16 29 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 30 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 31 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.79 7.82 -51.93 -0.41 0.38 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.61 7.07 -51.93 -0.37 0.24 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.13 1.22 5.49 -52.49 -0.29 0.93 16 41 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 42 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 43 H 0.14 2.30 5.92 -52.49 -0.31 1.99 16 44 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.07 1.35 5.84 -51.93 -0.30 1.04 16 46 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 47 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 48 H 0.06 1.49 7.46 -51.93 -0.39 1.10 16 49 H 0.05 1.30 7.68 -51.93 -0.40 0.90 16 50 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 393.86 15.07 5.94 5.94 Total: -1.00 -32.73 393.86 -10.67 -43.39 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -7.82 Total: 3.80 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: -2.97 Total: 0.73 kcal Atomic # 7 Polarization: -52.78 SS G_CDS: -0.35 Total: -53.14 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -0.43 Total: -17.30 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.73 -10.67 -43.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032653635.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.671 kcal (2) G-P(sol) polarization free energy of solvation -32.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds