Wall clock time and date at job start Wed Apr 1 2020 03:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47053 * 2 1 4 4 H 1.09001 * 109.47072 * 55.00554 * 3 2 1 5 5 C 1.53006 * 109.47045 * 175.00130 * 3 2 1 6 6 O 1.42897 * 109.47564 * 295.00445 * 3 2 1 7 7 C 1.35647 * 117.00393 * 154.00823 * 6 3 2 8 8 C 1.38706 * 120.14862 * 4.95351 * 7 6 3 9 9 C 1.38063 * 120.08397 * 179.79242 * 8 7 6 10 10 C 1.38545 * 120.39073 * 0.46869 * 9 8 7 11 11 C 1.37789 * 120.29890 * 359.78463 * 10 9 8 12 12 C 1.39708 * 119.90783 * 359.97438 * 11 10 9 13 13 C 1.47536 * 120.19101 * 180.02562 * 12 11 10 14 14 O 1.21593 * 120.00063 * 138.20466 * 13 12 11 15 15 N 1.34779 * 120.00365 * 318.21271 * 13 12 11 16 16 C 1.47863 * 126.94051 * 354.73315 * 15 13 12 17 17 C 1.56021 * 105.10396 * 181.98289 * 16 15 13 18 18 H 1.09001 * 116.24788 * 159.68054 * 17 16 15 19 19 C 1.57078 * 99.60555 * 32.81004 * 17 16 15 20 20 C 1.49284 * 126.94626 * 174.42779 * 15 13 12 21 21 H 1.08995 * 116.15422 * 15.85866 * 20 15 13 22 22 C 1.55487 * 104.35190 * 246.77422 * 20 15 13 23 23 N 1.47868 * 105.17216 * 288.90284 * 22 20 15 24 24 C 1.36929 * 126.94283 * 181.92142 * 23 22 20 25 25 H 1.08008 * 120.00093 * 179.97438 * 24 23 22 26 26 C 1.38806 * 120.00372 * 0.02562 * 24 23 22 27 27 N 1.31621 * 120.00073 * 359.97438 * 26 24 23 28 28 Si 1.86806 * 120.00195 * 180.02562 * 26 24 23 29 29 H 1.48503 * 109.47401 * 89.99740 * 28 26 24 30 30 H 1.48507 * 109.46780 * 209.99629 * 28 26 24 31 31 H 1.48503 * 109.46829 * 329.99307 * 28 26 24 32 32 H 1.09004 * 109.46761 * 299.99461 * 1 2 3 33 33 H 1.08999 * 109.46909 * 180.02562 * 1 2 3 34 34 H 1.08994 * 109.47496 * 59.99654 * 1 2 3 35 35 H 1.08994 * 109.47496 * 120.00346 * 2 1 3 36 36 H 1.09004 * 109.46761 * 240.00539 * 2 1 3 37 37 H 1.09001 * 109.46838 * 180.02562 * 5 3 2 38 38 H 1.09001 * 109.47022 * 300.00187 * 5 3 2 39 39 H 1.09001 * 109.46839 * 60.00282 * 5 3 2 40 40 H 1.08001 * 119.95863 * 0.02562 * 8 7 6 41 41 H 1.07997 * 119.80381 * 180.21297 * 9 8 7 42 42 H 1.07999 * 119.85312 * 179.76962 * 10 9 8 43 43 H 1.07998 * 120.04799 * 179.97438 * 11 10 9 44 44 H 1.09003 * 110.32032 * 300.89286 * 16 15 13 45 45 H 1.09003 * 110.31425 * 63.07969 * 16 15 13 46 46 H 1.09006 * 112.37227 * 64.27353 * 19 17 16 47 47 H 1.08999 * 112.36975 * 191.71408 * 19 17 16 48 48 H 1.09001 * 110.34838 * 169.94373 * 22 20 15 49 49 H 1.08994 * 110.21392 * 47.80115 * 22 20 15 50 50 H 0.97000 * 120.00002 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5648 1.4443 0.1257 6 8 1.6619 2.0815 -1.2209 7 6 1.5321 3.4315 -1.1951 8 6 1.8618 4.1412 -0.0499 9 6 1.7333 5.5156 -0.0264 10 6 1.2660 6.1950 -1.1398 11 6 0.9289 5.5054 -2.2841 12 6 1.0588 4.1149 -2.3232 13 6 0.7002 3.3704 -3.5454 14 8 1.4059 2.4582 -3.9307 15 7 -0.4095 3.7013 -4.2350 16 6 -1.4282 4.7023 -3.8521 17 6 -2.5060 4.6368 -4.9783 18 1 -3.4903 5.0321 -4.7271 19 6 -2.4162 3.1106 -5.3386 20 6 -0.8553 3.1359 -5.5427 21 1 -0.3774 2.2065 -5.8522 22 6 -0.7408 4.3263 -6.5364 23 7 -1.8331 5.2498 -6.1615 24 6 -2.1609 6.4289 -6.7756 25 1 -2.9866 7.0190 -6.4059 26 6 -1.4330 6.8654 -7.8739 27 7 -0.4271 6.1461 -8.3248 28 14 -1.8799 8.4744 -8.7112 29 1 -1.1244 9.5869 -8.0811 30 1 -1.5333 8.3950 -10.1531 31 1 -3.3371 8.7203 -8.5651 32 1 -0.3633 0.5138 0.8901 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3634 0.5138 -0.8899 35 1 1.8934 -0.5138 0.8899 36 1 1.8933 -0.5138 -0.8901 37 1 3.9281 2.4720 0.1261 38 1 3.8532 0.9569 1.0571 39 1 3.9994 0.9053 -0.7162 40 1 2.2232 3.6184 0.8233 41 1 1.9946 6.0640 0.8665 42 1 1.1654 7.2699 -1.1107 43 1 0.5647 6.0390 -3.1495 44 1 -1.8701 4.4437 -2.8898 45 1 -0.9844 5.6970 -3.8104 46 1 -2.7188 2.4702 -4.5100 47 1 -2.9500 2.8692 -6.2578 48 1 -0.8739 3.9789 -7.5610 49 1 0.2255 4.8180 -6.4252 50 1 0.0818 6.4514 -9.0921 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032653635.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:28 Heat of formation + Delta-G solvation = -5.785608 kcal Electronic energy + Delta-G solvation = -31471.254194 eV Core-core repulsion = 27464.893920 eV Total energy + Delta-G solvation = -4006.360273 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.93046 -41.11145 -39.29975 -38.45972 -35.47312 -35.11846 -33.55225 -32.17828 -30.98562 -30.82936 -30.44380 -30.18182 -27.00329 -25.80563 -25.02846 -24.37115 -23.76771 -22.11375 -21.63603 -21.36256 -20.37134 -19.36600 -18.73358 -18.00725 -17.56040 -16.98795 -16.79941 -16.21713 -16.11297 -16.01707 -15.78315 -15.39600 -15.00349 -14.92744 -14.83256 -14.38224 -14.26917 -13.96510 -13.83057 -13.62776 -13.38873 -13.22794 -13.12859 -12.89691 -12.83605 -12.75336 -12.69903 -12.63805 -12.36369 -12.19777 -12.13458 -12.04444 -12.00894 -11.82690 -11.61742 -11.54964 -11.51380 -10.95364 -10.69052 -10.05395 -9.53304 -9.19714 -8.91602 -7.83430 -5.19837 -0.03272 0.40645 1.47550 1.49087 1.57864 1.78997 1.98323 2.20368 2.49020 2.76682 3.32360 3.35985 3.54397 3.67989 3.77441 3.80768 3.88266 3.92565 4.01307 4.03573 4.08218 4.18147 4.21139 4.35159 4.39804 4.48595 4.55082 4.60540 4.63829 4.67091 4.75288 4.79334 4.85656 4.93454 4.96666 5.00902 5.02987 5.11377 5.15979 5.18566 5.21611 5.24940 5.34299 5.37030 5.44098 5.47955 5.54719 5.64608 5.78299 6.09095 6.47042 6.65464 7.02708 7.16855 7.70882 8.41925 9.27797 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016251 B = 0.003174 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.523494 B = 8819.880346 C = 9623.243048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C 0.067 3.933 4 H 0.094 0.906 5 C -0.176 4.176 6 O -0.315 6.315 7 C 0.168 3.832 8 C -0.216 4.216 9 C -0.045 4.045 10 C -0.163 4.163 11 C -0.057 4.057 12 C -0.191 4.191 13 C 0.572 3.428 14 O -0.584 6.584 15 N -0.606 5.606 16 C 0.092 3.908 17 C 0.137 3.863 18 H 0.138 0.862 19 C -0.127 4.127 20 C 0.099 3.901 21 H 0.109 0.891 22 C 0.190 3.810 23 N -0.614 5.614 24 C -0.229 4.229 25 H 0.098 0.902 26 C -0.072 4.072 27 N -0.958 5.958 28 Si 0.978 3.022 29 H -0.289 1.289 30 H -0.303 1.303 31 H -0.261 1.261 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.029 0.971 35 H 0.113 0.887 36 H 0.055 0.945 37 H 0.060 0.940 38 H 0.102 0.898 39 H 0.049 0.951 40 H 0.163 0.837 41 H 0.170 0.830 42 H 0.153 0.847 43 H 0.119 0.881 44 H 0.086 0.914 45 H 0.061 0.939 46 H 0.097 0.903 47 H 0.084 0.916 48 H 0.020 0.980 49 H -0.004 1.004 50 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.927 -6.497 24.780 25.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C 0.011 3.989 4 H 0.112 0.888 5 C -0.233 4.233 6 O -0.228 6.228 7 C 0.120 3.880 8 C -0.235 4.235 9 C -0.063 4.063 10 C -0.181 4.181 11 C -0.076 4.076 12 C -0.195 4.195 13 C 0.363 3.637 14 O -0.465 6.465 15 N -0.339 5.339 16 C -0.032 4.032 17 C 0.031 3.969 18 H 0.156 0.844 19 C -0.166 4.166 20 C -0.004 4.004 21 H 0.127 0.873 22 C 0.064 3.936 23 N -0.339 5.339 24 C -0.357 4.357 25 H 0.115 0.885 26 C -0.264 4.264 27 N -0.607 5.607 28 Si 0.807 3.193 29 H -0.217 1.217 30 H -0.230 1.230 31 H -0.186 1.186 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.048 0.952 35 H 0.131 0.869 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.121 0.879 39 H 0.069 0.931 40 H 0.180 0.820 41 H 0.187 0.813 42 H 0.170 0.830 43 H 0.137 0.863 44 H 0.104 0.896 45 H 0.079 0.921 46 H 0.115 0.885 47 H 0.102 0.898 48 H 0.038 0.962 49 H 0.014 0.986 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 1.388 -6.985 24.274 25.297 hybrid contribution 0.494 0.860 -1.525 1.819 sum 1.882 -6.124 22.749 23.634 Atomic orbital electron populations 1.21727 0.95466 1.02296 1.01357 1.21678 0.96583 0.93444 1.03727 1.22932 0.96127 0.94577 0.85217 0.88803 1.22358 0.94125 1.03087 1.03720 1.86278 1.82639 1.16567 1.37292 1.19116 0.92260 0.83371 0.93215 1.21536 1.08235 0.95975 0.97712 1.21549 0.92896 0.93074 0.98779 1.21298 1.02670 1.01509 0.92623 1.21326 0.95797 0.91276 0.99206 1.19237 1.11943 0.94456 0.93825 1.18213 0.79453 0.82548 0.83521 1.90703 1.52435 1.32545 1.70849 1.49160 1.22553 1.40349 1.21807 1.23318 0.89652 0.91057 0.99184 1.23594 0.95508 0.91885 0.85921 0.84442 1.24088 0.92527 0.97530 1.02497 1.24137 0.96091 0.96688 0.83470 0.87348 1.21388 0.90143 0.88087 0.93957 1.45483 1.34052 1.21729 1.32600 1.19546 1.11977 0.96231 1.07997 0.88474 1.25677 0.98426 1.02284 1.00010 1.70175 1.23218 1.40038 1.27270 0.85076 0.78321 0.79161 0.76756 1.21659 1.23003 1.18575 0.91434 0.91385 0.95210 0.86859 0.92624 0.92092 0.87932 0.93150 0.82002 0.81282 0.82974 0.86318 0.89597 0.92090 0.88451 0.89786 0.96179 0.98604 0.94767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 9.81 71.98 0.71 -2.05 16 2 C -0.12 -2.01 5.64 30.59 0.17 -1.84 16 3 C 0.07 1.29 2.22 30.60 0.07 1.35 16 4 H 0.09 1.36 6.22 -2.39 -0.01 1.35 16 5 C -0.18 -2.88 9.21 71.98 0.66 -2.21 16 6 O -0.31 -9.60 8.16 -75.41 -0.62 -10.22 16 7 C 0.17 4.98 6.59 22.84 0.15 5.13 16 8 C -0.22 -4.39 8.29 22.34 0.19 -4.21 16 9 C -0.05 -0.78 10.03 22.30 0.22 -0.56 16 10 C -0.16 -3.57 10.02 22.24 0.22 -3.35 16 11 C -0.06 -1.75 8.53 22.52 0.19 -1.56 16 12 C -0.19 -6.70 5.49 -20.01 -0.11 -6.81 16 13 C 0.57 24.54 7.27 86.70 0.63 25.17 16 14 O -0.58 -29.19 16.56 10.20 0.17 -29.02 16 15 N -0.61 -24.57 2.95 -772.35 -2.28 -26.85 16 16 C 0.09 3.20 5.25 87.17 0.46 3.66 16 17 C 0.14 4.98 5.53 46.93 0.26 5.23 16 18 H 0.14 4.14 8.14 -2.39 -0.02 4.12 16 19 C -0.13 -4.32 6.83 33.59 0.23 -4.09 16 20 C 0.10 4.19 5.24 46.87 0.25 4.44 16 21 H 0.11 4.63 8.03 -2.39 -0.02 4.61 16 22 C 0.19 9.87 4.75 86.97 0.41 10.29 16 23 N -0.61 -30.07 3.02 -649.63 -1.96 -32.03 16 24 C -0.23 -12.17 10.37 84.03 0.87 -11.30 16 25 H 0.10 4.74 7.83 -2.91 -0.02 4.72 16 26 C -0.07 -4.04 5.49 84.86 0.47 -3.57 16 27 N -0.96 -59.06 10.56 21.65 0.23 -58.83 16 28 Si 0.98 45.41 29.55 68.60 2.03 47.43 16 29 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 30 H -0.30 -14.52 7.11 99.48 0.71 -13.82 16 31 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 32 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.03 0.73 7.82 -2.39 -0.02 0.71 16 35 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 37 H 0.06 1.02 7.07 -2.39 -0.02 1.00 16 38 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.16 2.22 5.49 -2.91 -0.02 2.21 16 41 H 0.17 1.51 8.06 -2.91 -0.02 1.48 16 42 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 43 H 0.12 4.06 5.92 -2.91 -0.02 4.05 16 44 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 45 H 0.06 2.29 5.84 -2.39 -0.01 2.28 16 46 H 0.10 2.75 8.14 -2.38 -0.02 2.73 16 47 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 48 H 0.02 1.16 7.46 -2.39 -0.02 1.15 16 49 H 0.00 -0.26 7.68 -2.39 -0.02 -0.28 16 50 H 0.24 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -78.95 393.86 4.55 -74.40 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: 0.93 Total: 21.41 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: 6.05 Total: 13.71 kcal Atomic # 7 Polarization: -113.70 SS G_CDS: -4.01 Total: -117.71 kcal Atomic # 8 Polarization: -38.80 SS G_CDS: -0.45 Total: -39.24 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.43 kcal Total: -78.95 4.55 -74.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032653635.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.612 kcal (2) G-P(sol) polarization free energy of solvation -78.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds