Wall clock time and date at job start Wed Apr 1 2020 03:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46840 * 2 1 4 4 H 1.08989 * 109.47209 * 305.71829 * 3 2 1 5 5 O 1.42902 * 109.47156 * 65.72462 * 3 2 1 6 6 C 1.35895 * 116.99584 * 264.77741 * 5 3 2 7 7 C 1.38749 * 120.05885 * 359.19664 * 6 5 3 8 8 C 1.38126 * 119.94824 * 179.97438 * 7 6 5 9 9 C 1.38288 * 120.05160 * 0.02562 * 8 7 6 10 10 C 1.38248 * 120.11610 * 0.02562 * 9 8 7 11 11 C 1.50693 * 119.97280 * 179.97438 * 10 9 8 12 12 C 1.38169 * 120.05015 * 359.67519 * 10 9 8 13 13 C 1.50705 * 109.46470 * 185.71881 * 3 2 1 14 14 O 1.21271 * 120.00052 * 251.89538 * 13 3 2 15 15 N 1.34779 * 119.99486 * 71.90485 * 13 3 2 16 16 C 1.47865 * 126.94775 * 355.14874 * 15 13 3 17 17 C 1.56027 * 105.10302 * 181.98392 * 16 15 13 18 18 H 1.08997 * 116.24515 * 159.68378 * 17 16 15 19 19 C 1.57080 * 100.41487 * 33.05088 * 17 16 15 20 20 C 1.52328 * 127.22931 * 175.70424 * 15 13 3 21 21 H 1.08999 * 116.77924 * 15.64778 * 20 15 13 22 22 C 1.56012 * 103.37074 * 246.65406 * 20 15 13 23 23 N 1.47872 * 105.10498 * 289.00407 * 22 20 15 24 24 C 1.36935 * 126.94543 * 182.00438 * 23 22 20 25 25 H 1.07993 * 119.99916 * 179.97438 * 24 23 22 26 26 C 1.38814 * 119.99913 * 359.97198 * 24 23 22 27 27 N 1.31620 * 119.99914 * 359.97438 * 26 24 23 28 28 Si 1.86803 * 119.99879 * 179.97438 * 26 24 23 29 29 H 1.48497 * 109.47115 * 60.00144 * 28 26 24 30 30 H 1.48502 * 109.46950 * 179.97438 * 28 26 24 31 31 H 1.48496 * 109.47158 * 299.99768 * 28 26 24 32 32 H 1.08998 * 109.47504 * 299.99930 * 1 2 3 33 33 H 1.08998 * 109.47003 * 60.00145 * 1 2 3 34 34 H 1.09006 * 109.47182 * 179.97438 * 1 2 3 35 35 H 1.09000 * 109.46628 * 239.99844 * 2 1 3 36 36 H 1.09004 * 109.46717 * 120.00201 * 2 1 3 37 37 H 1.08002 * 120.02823 * 359.97438 * 7 6 5 38 38 H 1.07993 * 119.97666 * 180.02562 * 8 7 6 39 39 H 1.07999 * 119.94353 * 179.97438 * 9 8 7 40 40 H 1.09005 * 109.47340 * 90.00359 * 11 10 9 41 41 H 1.09007 * 109.46584 * 209.99502 * 11 10 9 42 42 H 1.08995 * 109.47653 * 329.99447 * 11 10 9 43 43 H 1.08001 * 120.02962 * 180.29984 * 12 10 9 44 44 H 1.08997 * 110.31533 * 63.07708 * 16 15 13 45 45 H 1.08995 * 110.31752 * 300.88672 * 16 15 13 46 46 H 1.09003 * 112.37064 * 64.06674 * 19 17 16 47 47 H 1.09005 * 112.36570 * 191.50491 * 19 17 16 48 48 H 1.08992 * 110.31614 * 170.09115 * 22 20 15 49 49 H 1.09001 * 110.31482 * 47.90738 * 22 20 15 50 50 H 0.97005 * 119.99736 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5955 1.9850 -0.8343 5 8 1.6765 2.0762 1.2282 6 6 0.5321 2.8091 1.2291 7 6 -0.2168 2.9298 0.0673 8 6 -1.3799 3.6748 0.0709 9 6 -1.7979 4.3006 1.2312 10 6 -1.0530 4.1828 2.3898 11 6 -1.5112 4.8664 3.6522 12 6 0.1079 3.4335 2.3929 13 6 3.5403 1.4448 -0.1416 14 8 4.2383 1.7387 0.8055 15 7 4.1063 1.1203 -1.3210 16 6 3.4142 0.6447 -2.5380 17 6 4.5504 0.3753 -3.5728 18 1 4.3018 -0.2905 -4.3992 19 6 5.7017 -0.0966 -2.6141 20 6 5.5880 1.1558 -1.6729 21 1 6.2890 1.2187 -0.8407 22 6 5.6785 2.2915 -2.7387 23 7 5.0312 1.7380 -3.9476 24 6 4.8996 2.3514 -5.1648 25 1 4.4035 1.8400 -5.9763 26 6 5.4039 3.6305 -5.3555 27 7 6.0081 4.2540 -4.3662 28 14 5.2251 4.4670 -7.0162 29 1 3.7845 4.5954 -7.3531 30 1 5.8419 5.8167 -6.9596 31 1 5.9061 3.6542 -8.0557 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3634 -1.0277 -0.0005 35 1 1.8933 -0.5139 -0.8900 36 1 1.8933 -0.5139 0.8900 37 1 0.1094 2.4417 -0.8392 38 1 -1.9634 3.7688 -0.8329 39 1 -2.7074 4.8830 1.2319 40 1 -2.1574 4.1935 4.2159 41 1 -0.6440 5.1296 4.2580 42 1 -2.0632 5.7706 3.3959 43 1 0.6870 3.3377 3.2995 44 1 2.7359 1.4116 -2.9117 45 1 2.8680 -0.2749 -2.3278 46 1 5.4580 -1.0260 -2.0991 47 1 6.6663 -0.1499 -3.1190 48 1 6.7207 2.5347 -2.9451 49 1 5.1435 3.1768 -2.3948 50 1 6.3609 5.1477 -4.4997 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032678728.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:15 Heat of formation + Delta-G solvation = 15.839119 kcal Electronic energy + Delta-G solvation = -31192.134313 eV Core-core repulsion = 27186.711759 eV Total energy + Delta-G solvation = -4005.422555 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.78806 -39.77948 -38.31231 -37.12851 -34.13364 -33.37016 -32.62955 -31.49900 -30.29254 -29.22457 -28.62442 -27.21386 -27.07967 -25.24999 -23.62724 -22.67019 -22.53685 -21.40962 -20.17926 -19.80207 -18.63086 -18.28180 -17.24864 -16.34010 -16.18557 -15.92671 -15.76717 -15.38735 -14.99318 -14.64011 -14.32368 -13.98617 -13.95287 -13.72562 -13.49344 -13.29568 -13.16051 -12.92850 -12.47950 -12.40282 -12.17071 -12.11079 -11.87290 -11.85470 -11.74821 -11.59923 -11.36940 -11.21411 -11.07005 -10.96987 -10.89728 -10.79886 -10.62530 -10.51720 -10.30982 -10.13981 -9.68149 -9.37940 -8.86414 -8.75220 -8.16422 -8.09597 -6.98661 -5.81475 -3.16541 1.23978 1.39922 2.66114 2.92424 3.34290 3.38612 3.41087 3.60565 3.68755 4.37187 4.50794 4.62038 4.71126 4.75305 4.79729 4.94716 5.00223 5.09827 5.11802 5.15586 5.24847 5.27346 5.32674 5.40488 5.43262 5.48270 5.49966 5.58093 5.62292 5.68803 5.70628 5.74038 5.88647 5.91827 5.99073 6.06687 6.12086 6.17187 6.28407 6.31523 6.36509 6.40094 6.49637 6.51753 6.57019 6.71031 7.35012 7.37919 7.43508 7.66397 7.97966 8.04926 8.48410 9.04918 9.66072 10.34465 11.30525 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011671 B = 0.003208 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.516513 B = 8726.104420 C = 9854.927336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.140 4.140 3 C 0.070 3.930 4 H 0.100 0.900 5 O -0.283 6.283 6 C 0.141 3.859 7 C -0.216 4.216 8 C -0.074 4.074 9 C -0.164 4.164 10 C -0.050 4.050 11 C -0.114 4.114 12 C -0.155 4.155 13 C 0.531 3.469 14 O -0.535 6.535 15 N -0.608 5.608 16 C 0.079 3.921 17 C 0.142 3.858 18 H 0.106 0.894 19 C -0.149 4.149 20 C 0.103 3.897 21 H 0.117 0.883 22 C 0.174 3.826 23 N -0.597 5.597 24 C -0.235 4.235 25 H 0.080 0.920 26 C -0.004 4.004 27 N -0.919 5.919 28 Si 0.913 3.087 29 H -0.285 1.285 30 H -0.290 1.290 31 H -0.284 1.284 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.132 0.868 38 H 0.124 0.876 39 H 0.121 0.879 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.130 0.870 44 H 0.071 0.929 45 H 0.057 0.943 46 H 0.066 0.934 47 H 0.087 0.913 48 H 0.058 0.942 49 H 0.048 0.952 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.207 -7.038 9.913 18.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.177 4.177 3 C 0.010 3.990 4 H 0.118 0.882 5 O -0.195 6.195 6 C 0.095 3.905 7 C -0.234 4.234 8 C -0.092 4.092 9 C -0.182 4.182 10 C -0.050 4.050 11 C -0.170 4.170 12 C -0.174 4.174 13 C 0.317 3.683 14 O -0.412 6.412 15 N -0.344 5.344 16 C -0.047 4.047 17 C 0.033 3.967 18 H 0.124 0.876 19 C -0.189 4.189 20 C 0.003 3.997 21 H 0.135 0.865 22 C 0.049 3.951 23 N -0.321 5.321 24 C -0.363 4.363 25 H 0.098 0.902 26 C -0.201 4.201 27 N -0.565 5.565 28 Si 0.743 3.257 29 H -0.212 1.212 30 H -0.216 1.216 31 H -0.211 1.211 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.106 0.894 36 H 0.097 0.903 37 H 0.149 0.851 38 H 0.142 0.858 39 H 0.139 0.861 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.147 0.853 44 H 0.089 0.911 45 H 0.075 0.925 46 H 0.085 0.915 47 H 0.105 0.895 48 H 0.076 0.924 49 H 0.066 0.934 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -13.663 -6.603 10.535 18.473 hybrid contribution -0.215 0.617 -1.184 1.353 sum -13.877 -5.986 9.351 17.772 Atomic orbital electron populations 1.21931 0.94540 1.02274 1.02406 1.22022 0.97184 0.94290 1.04251 1.22349 0.93914 0.95140 0.87604 0.88243 1.86199 1.37949 1.61810 1.33516 1.19056 0.85864 0.91324 0.94245 1.21363 0.98244 1.05811 0.98026 1.20903 0.95271 0.95060 0.98012 1.20900 1.01086 1.03434 0.92795 1.19673 0.93639 0.95980 0.95715 1.20795 1.01753 0.99914 0.94560 1.20270 0.98382 1.01628 0.97076 1.19628 0.88617 0.78008 0.82009 1.90687 1.63759 1.48824 1.37893 1.49864 1.09468 1.64682 1.10414 1.23423 0.97316 0.97879 0.86040 1.23163 0.90955 0.89201 0.93406 0.87580 1.24113 1.00820 0.96058 0.97903 1.24951 0.79863 0.98301 0.96623 0.86536 1.21928 0.98374 0.91595 0.83249 1.45235 1.66162 1.11494 1.09230 1.18987 1.32626 0.97356 0.87282 0.90169 1.24828 1.00359 0.97113 0.97840 1.69901 1.42393 1.13893 1.30290 0.86194 0.77649 0.78753 0.83088 1.21150 1.21593 1.21076 0.92116 0.92213 0.92037 0.89366 0.90280 0.85060 0.85792 0.86128 0.91017 0.91321 0.91369 0.85250 0.91074 0.92547 0.91504 0.89465 0.92404 0.93405 0.93458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 8.46 37.16 0.31 -1.25 16 2 C -0.14 -1.68 5.56 -26.73 -0.15 -1.82 16 3 C 0.07 1.07 2.00 -27.88 -0.06 1.01 16 4 H 0.10 1.47 5.32 -51.94 -0.28 1.19 16 5 O -0.28 -4.70 9.22 -39.03 -0.36 -5.06 16 6 C 0.14 2.05 5.42 -39.22 -0.21 1.84 16 7 C -0.22 -2.79 7.20 -39.43 -0.28 -3.07 16 8 C -0.07 -0.84 10.04 -39.60 -0.40 -1.23 16 9 C -0.16 -1.75 9.70 -39.56 -0.38 -2.13 16 10 C -0.05 -0.56 5.88 -104.65 -0.62 -1.17 16 11 C -0.11 -0.91 10.01 36.00 0.36 -0.55 16 12 C -0.15 -2.04 9.64 -39.43 -0.38 -2.42 16 13 C 0.53 10.06 7.23 -10.98 -0.08 9.98 16 14 O -0.53 -12.08 16.97 -14.06 -0.24 -12.32 16 15 N -0.61 -11.01 3.02 -154.41 -0.47 -11.48 16 16 C 0.08 1.26 5.62 -1.67 -0.01 1.25 16 17 C 0.14 2.49 5.46 -62.55 -0.34 2.14 16 18 H 0.11 1.65 8.14 -51.93 -0.42 1.23 16 19 C -0.15 -2.41 6.83 -22.31 -0.15 -2.56 16 20 C 0.10 1.96 5.40 -60.79 -0.33 1.63 16 21 H 0.12 2.16 8.12 -51.93 -0.42 1.74 16 22 C 0.17 4.08 4.75 -1.68 -0.01 4.07 16 23 N -0.60 -13.86 3.01 -156.35 -0.47 -14.34 16 24 C -0.23 -6.07 10.38 -15.06 -0.16 -6.23 16 25 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 26 C 0.00 -0.12 5.49 -17.43 -0.10 -0.21 16 27 N -0.92 -26.39 10.56 55.49 0.59 -25.81 16 28 Si 0.91 21.36 29.55 -169.99 -5.02 16.33 16 29 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 30 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 31 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 32 H 0.06 0.68 6.31 -51.93 -0.33 0.35 16 33 H 0.06 0.56 6.83 -51.93 -0.35 0.21 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.09 0.96 5.53 -51.93 -0.29 0.68 16 36 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.13 1.60 4.47 -52.49 -0.23 1.37 16 38 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 39 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 42 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 43 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 44 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 45 H 0.06 0.71 6.03 -51.93 -0.31 0.40 16 46 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 48 H 0.06 1.50 7.46 -51.93 -0.39 1.11 16 49 H 0.05 1.31 7.67 -51.93 -0.40 0.91 16 50 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 389.96 15.07 5.88 5.88 Total: -1.00 -32.37 389.96 -10.69 -43.06 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -7.61 Total: 4.47 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: -2.97 Total: -0.73 kcal Atomic # 7 Polarization: -51.27 SS G_CDS: -0.35 Total: -51.62 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: -0.60 Total: -17.38 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.37 -10.69 -43.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032678728.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.895 kcal (2) G-P(sol) polarization free energy of solvation -32.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds