Wall clock time and date at job start Wed Apr 1 2020 03:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46840 * 2 1 4 4 H 1.08989 * 109.47209 * 305.71829 * 3 2 1 5 5 O 1.42902 * 109.47156 * 65.72462 * 3 2 1 6 6 C 1.35895 * 116.99584 * 264.77741 * 5 3 2 7 7 C 1.38749 * 120.05885 * 359.19664 * 6 5 3 8 8 C 1.38126 * 119.94824 * 179.97438 * 7 6 5 9 9 C 1.38288 * 120.05160 * 0.02562 * 8 7 6 10 10 C 1.38248 * 120.11610 * 0.02562 * 9 8 7 11 11 C 1.50693 * 119.97280 * 179.97438 * 10 9 8 12 12 C 1.38169 * 120.05015 * 359.67519 * 10 9 8 13 13 C 1.50705 * 109.46470 * 185.71881 * 3 2 1 14 14 O 1.21271 * 120.00052 * 251.89538 * 13 3 2 15 15 N 1.34779 * 119.99486 * 71.90485 * 13 3 2 16 16 C 1.47865 * 126.94775 * 355.14874 * 15 13 3 17 17 C 1.56027 * 105.10302 * 181.98392 * 16 15 13 18 18 H 1.08997 * 116.24515 * 159.68378 * 17 16 15 19 19 C 1.57080 * 100.41487 * 33.05088 * 17 16 15 20 20 C 1.52328 * 127.22931 * 175.70424 * 15 13 3 21 21 H 1.08999 * 116.77924 * 15.64778 * 20 15 13 22 22 C 1.56012 * 103.37074 * 246.65406 * 20 15 13 23 23 N 1.47872 * 105.10498 * 289.00407 * 22 20 15 24 24 C 1.36935 * 126.94543 * 182.00438 * 23 22 20 25 25 H 1.07993 * 119.99916 * 179.97438 * 24 23 22 26 26 C 1.38814 * 119.99913 * 359.97198 * 24 23 22 27 27 N 1.31620 * 119.99914 * 359.97438 * 26 24 23 28 28 Si 1.86803 * 119.99879 * 179.97438 * 26 24 23 29 29 H 1.48497 * 109.47115 * 60.00144 * 28 26 24 30 30 H 1.48502 * 109.46950 * 179.97438 * 28 26 24 31 31 H 1.48496 * 109.47158 * 299.99768 * 28 26 24 32 32 H 1.08998 * 109.47504 * 299.99930 * 1 2 3 33 33 H 1.08998 * 109.47003 * 60.00145 * 1 2 3 34 34 H 1.09006 * 109.47182 * 179.97438 * 1 2 3 35 35 H 1.09000 * 109.46628 * 239.99844 * 2 1 3 36 36 H 1.09004 * 109.46717 * 120.00201 * 2 1 3 37 37 H 1.08002 * 120.02823 * 359.97438 * 7 6 5 38 38 H 1.07993 * 119.97666 * 180.02562 * 8 7 6 39 39 H 1.07999 * 119.94353 * 179.97438 * 9 8 7 40 40 H 1.09005 * 109.47340 * 90.00359 * 11 10 9 41 41 H 1.09007 * 109.46584 * 209.99502 * 11 10 9 42 42 H 1.08995 * 109.47653 * 329.99447 * 11 10 9 43 43 H 1.08001 * 120.02962 * 180.29984 * 12 10 9 44 44 H 1.08997 * 110.31533 * 63.07708 * 16 15 13 45 45 H 1.08995 * 110.31752 * 300.88672 * 16 15 13 46 46 H 1.09003 * 112.37064 * 64.06674 * 19 17 16 47 47 H 1.09005 * 112.36570 * 191.50491 * 19 17 16 48 48 H 1.08992 * 110.31614 * 170.09115 * 22 20 15 49 49 H 1.09001 * 110.31482 * 47.90738 * 22 20 15 50 50 H 0.97005 * 119.99736 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5955 1.9850 -0.8343 5 8 1.6765 2.0762 1.2282 6 6 0.5321 2.8091 1.2291 7 6 -0.2168 2.9298 0.0673 8 6 -1.3799 3.6748 0.0709 9 6 -1.7979 4.3006 1.2312 10 6 -1.0530 4.1828 2.3898 11 6 -1.5112 4.8664 3.6522 12 6 0.1079 3.4335 2.3929 13 6 3.5403 1.4448 -0.1416 14 8 4.2383 1.7387 0.8055 15 7 4.1063 1.1203 -1.3210 16 6 3.4142 0.6447 -2.5380 17 6 4.5504 0.3753 -3.5728 18 1 4.3018 -0.2905 -4.3992 19 6 5.7017 -0.0966 -2.6141 20 6 5.5880 1.1558 -1.6729 21 1 6.2890 1.2187 -0.8407 22 6 5.6785 2.2915 -2.7387 23 7 5.0312 1.7380 -3.9476 24 6 4.8996 2.3514 -5.1648 25 1 4.4035 1.8400 -5.9763 26 6 5.4039 3.6305 -5.3555 27 7 6.0081 4.2540 -4.3662 28 14 5.2251 4.4670 -7.0162 29 1 3.7845 4.5954 -7.3531 30 1 5.8419 5.8167 -6.9596 31 1 5.9061 3.6542 -8.0557 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3634 -1.0277 -0.0005 35 1 1.8933 -0.5139 -0.8900 36 1 1.8933 -0.5139 0.8900 37 1 0.1094 2.4417 -0.8392 38 1 -1.9634 3.7688 -0.8329 39 1 -2.7074 4.8830 1.2319 40 1 -2.1574 4.1935 4.2159 41 1 -0.6440 5.1296 4.2580 42 1 -2.0632 5.7706 3.3959 43 1 0.6870 3.3377 3.2995 44 1 2.7359 1.4116 -2.9117 45 1 2.8680 -0.2749 -2.3278 46 1 5.4580 -1.0260 -2.0991 47 1 6.6663 -0.1499 -3.1190 48 1 6.7207 2.5347 -2.9451 49 1 5.1435 3.1768 -2.3948 50 1 6.3609 5.1477 -4.4997 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032678728.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:13 Heat of formation + Delta-G solvation = -1.667511 kcal Electronic energy + Delta-G solvation = -31192.893458 eV Core-core repulsion = 27186.711759 eV Total energy + Delta-G solvation = -4006.181699 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.00742 -41.11962 -39.58981 -38.41091 -35.60530 -34.79644 -33.47758 -33.13486 -31.25929 -30.84441 -30.26028 -28.33866 -27.88234 -26.98466 -25.26588 -23.58492 -23.49259 -22.77767 -21.50739 -21.23517 -20.15578 -19.41244 -18.82269 -17.86866 -17.52240 -17.01924 -16.92292 -16.79327 -16.31648 -16.05522 -15.69596 -15.31941 -15.09622 -14.82547 -14.79461 -14.41840 -14.20833 -13.87643 -13.78067 -13.65311 -13.48184 -13.32473 -13.12257 -12.97608 -12.93850 -12.89308 -12.69053 -12.67899 -12.51630 -12.36068 -12.16771 -12.11561 -12.07540 -11.91307 -11.84757 -11.53755 -11.45589 -10.90918 -10.67398 -9.76692 -9.64234 -9.14033 -8.92122 -7.84923 -5.20684 0.33269 0.45332 1.32694 1.47035 1.49620 1.52152 1.55813 2.38417 2.48511 2.76312 3.22851 3.33316 3.44256 3.54306 3.65107 3.75410 3.84420 3.87927 3.91519 3.99219 4.08441 4.17991 4.20159 4.34971 4.35113 4.42326 4.49939 4.54097 4.61243 4.71697 4.77615 4.82956 4.85227 4.90056 4.96006 5.00012 5.00488 5.05131 5.12497 5.21142 5.22685 5.27982 5.35869 5.43770 5.46562 5.47609 5.62429 5.64096 5.83005 6.08713 6.33724 6.54020 7.00158 7.01964 7.70720 8.40713 9.26194 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011671 B = 0.003208 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.516513 B = 8726.104420 C = 9854.927336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.130 4.130 3 C 0.077 3.923 4 H 0.104 0.896 5 O -0.311 6.311 6 C 0.114 3.886 7 C -0.225 4.225 8 C -0.077 4.077 9 C -0.163 4.163 10 C -0.052 4.052 11 C -0.112 4.112 12 C -0.176 4.176 13 C 0.522 3.478 14 O -0.583 6.583 15 N -0.608 5.608 16 C 0.084 3.916 17 C 0.137 3.863 18 H 0.140 0.860 19 C -0.126 4.126 20 C 0.102 3.898 21 H 0.115 0.885 22 C 0.187 3.813 23 N -0.616 5.616 24 C -0.229 4.229 25 H 0.098 0.902 26 C -0.072 4.072 27 N -0.958 5.958 28 Si 0.976 3.024 29 H -0.276 1.276 30 H -0.305 1.305 31 H -0.273 1.273 32 H 0.045 0.955 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.072 0.928 37 H 0.135 0.865 38 H 0.149 0.851 39 H 0.150 0.850 40 H 0.086 0.914 41 H 0.067 0.933 42 H 0.084 0.916 43 H 0.124 0.876 44 H 0.056 0.944 45 H 0.108 0.892 46 H 0.106 0.894 47 H 0.085 0.915 48 H 0.020 0.980 49 H -0.006 1.006 50 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.323 -9.307 8.882 21.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.168 4.168 3 C 0.017 3.983 4 H 0.121 0.879 5 O -0.224 6.224 6 C 0.069 3.931 7 C -0.243 4.243 8 C -0.095 4.095 9 C -0.181 4.181 10 C -0.052 4.052 11 C -0.169 4.169 12 C -0.195 4.195 13 C 0.310 3.690 14 O -0.463 6.463 15 N -0.342 5.342 16 C -0.040 4.040 17 C 0.031 3.969 18 H 0.157 0.843 19 C -0.165 4.165 20 C 0.001 3.999 21 H 0.133 0.867 22 C 0.061 3.939 23 N -0.340 5.340 24 C -0.358 4.358 25 H 0.116 0.884 26 C -0.264 4.264 27 N -0.607 5.607 28 Si 0.805 3.195 29 H -0.202 1.202 30 H -0.232 1.232 31 H -0.199 1.199 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.101 0.899 35 H 0.124 0.876 36 H 0.090 0.910 37 H 0.153 0.847 38 H 0.167 0.833 39 H 0.168 0.832 40 H 0.105 0.895 41 H 0.086 0.914 42 H 0.103 0.897 43 H 0.142 0.858 44 H 0.075 0.925 45 H 0.126 0.874 46 H 0.124 0.876 47 H 0.104 0.896 48 H 0.038 0.962 49 H 0.012 0.988 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -16.827 -8.938 9.477 21.280 hybrid contribution 0.706 1.344 -0.816 1.724 sum -16.121 -7.594 8.661 19.814 Atomic orbital electron populations 1.21884 0.92841 1.03566 1.02164 1.22015 0.98503 0.91633 1.04657 1.22370 0.90940 0.97404 0.87570 0.87877 1.86145 1.39373 1.62740 1.34138 1.19333 0.85875 0.92361 0.95530 1.21470 0.98845 1.06511 0.97492 1.21266 0.94731 0.94177 0.99321 1.21303 1.01729 1.02842 0.92183 1.20060 0.92690 0.95108 0.97328 1.20864 1.02150 1.00598 0.93271 1.20487 0.99560 1.02626 0.96794 1.20405 0.90261 0.76840 0.81472 1.90651 1.65201 1.50864 1.39580 1.49917 1.09138 1.64241 1.10949 1.23425 0.96524 0.99504 0.84516 1.23617 0.91673 0.86751 0.94854 0.84252 1.24027 1.00284 0.95828 0.96341 1.24812 0.81044 0.98158 0.95914 0.86746 1.21491 0.95440 0.91743 0.85194 1.45487 1.66313 1.13933 1.08290 1.19509 1.30507 0.97209 0.88545 0.88389 1.25667 1.01364 0.98418 1.00983 1.70158 1.44633 1.13603 1.32343 0.85175 0.77782 0.76946 0.79570 1.20168 1.23243 1.19877 0.93560 0.91312 0.89857 0.87635 0.90975 0.84745 0.83303 0.83230 0.89516 0.91398 0.89699 0.85767 0.92531 0.87448 0.87556 0.89646 0.96159 0.98757 0.94817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 8.46 71.98 0.61 -2.02 16 2 C -0.13 -2.87 5.56 30.59 0.17 -2.70 16 3 C 0.08 2.34 2.00 29.85 0.06 2.40 16 4 H 0.10 3.02 5.32 -2.39 -0.01 3.01 16 5 O -0.31 -10.72 9.22 -73.60 -0.68 -11.40 16 6 C 0.11 3.38 5.42 22.51 0.12 3.50 16 7 C -0.22 -5.65 7.20 22.37 0.16 -5.49 16 8 C -0.08 -1.58 10.04 22.25 0.22 -1.36 16 9 C -0.16 -3.09 9.70 22.28 0.22 -2.87 16 10 C -0.05 -1.09 5.88 -19.88 -0.12 -1.21 16 11 C -0.11 -1.60 10.01 71.23 0.71 -0.89 16 12 C -0.18 -4.73 9.64 22.37 0.22 -4.51 16 13 C 0.52 20.12 7.23 87.66 0.63 20.76 16 14 O -0.58 -27.56 16.97 15.76 0.27 -27.29 16 15 N -0.61 -21.75 3.02 -760.82 -2.30 -24.04 16 16 C 0.08 2.47 5.62 87.17 0.49 2.96 16 17 C 0.14 4.42 5.46 46.93 0.26 4.68 16 18 H 0.14 3.63 8.14 -2.39 -0.02 3.61 16 19 C -0.13 -3.73 6.83 33.46 0.23 -3.50 16 20 C 0.10 3.92 5.40 46.31 0.25 4.17 16 21 H 0.11 4.41 8.12 -2.39 -0.02 4.39 16 22 C 0.19 9.26 4.75 87.16 0.41 9.68 16 23 N -0.62 -28.57 3.01 -648.56 -1.95 -30.52 16 24 C -0.23 -11.79 10.38 84.03 0.87 -10.91 16 25 H 0.10 4.59 7.83 -2.91 -0.02 4.57 16 26 C -0.07 -3.97 5.49 84.86 0.47 -3.51 16 27 N -0.96 -58.14 10.56 21.65 0.23 -57.91 16 28 Si 0.98 44.61 29.55 68.60 2.03 46.64 16 29 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 30 H -0.31 -14.58 7.11 99.48 0.71 -13.87 16 31 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 32 H 0.05 0.98 6.31 -2.39 -0.02 0.96 16 33 H 0.07 1.10 6.83 -2.39 -0.02 1.08 16 34 H 0.08 1.13 8.14 -2.38 -0.02 1.12 16 35 H 0.11 1.89 5.53 -2.39 -0.01 1.88 16 36 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.14 3.16 4.47 -2.91 -0.01 3.15 16 38 H 0.15 2.24 8.06 -2.91 -0.02 2.21 16 39 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 40 H 0.09 0.99 8.14 -2.38 -0.02 0.98 16 41 H 0.07 0.98 8.09 -2.38 -0.02 0.96 16 42 H 0.08 0.93 8.08 -2.39 -0.02 0.91 16 43 H 0.12 3.29 8.06 -2.91 -0.02 3.27 16 44 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.11 2.15 6.03 -2.39 -0.01 2.13 16 46 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 47 H 0.09 2.62 8.14 -2.38 -0.02 2.60 16 48 H 0.02 1.13 7.46 -2.39 -0.02 1.12 16 49 H -0.01 -0.34 7.67 -2.39 -0.02 -0.36 16 50 H 0.24 14.64 8.31 -92.70 -0.77 13.87 16 Total: -1.00 -76.86 389.96 4.52 -72.34 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: 0.94 Total: 23.00 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: 5.99 Total: 9.18 kcal Atomic # 7 Polarization: -108.45 SS G_CDS: -4.02 Total: -112.47 kcal Atomic # 8 Polarization: -38.28 SS G_CDS: -0.41 Total: -38.69 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -76.86 4.52 -72.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032678728.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.670 kcal (2) G-P(sol) polarization free energy of solvation -76.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds