Wall clock time and date at job start Wed Apr 1 2020 03:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47382 * 2 1 4 4 H 1.09007 * 109.47435 * 54.29326 * 3 2 1 5 5 O 1.42906 * 109.46981 * 294.29159 * 3 2 1 6 6 C 1.35898 * 116.99933 * 94.65753 * 5 3 2 7 7 C 1.38758 * 120.05537 * 357.93163 * 6 5 3 8 8 C 1.38119 * 119.94523 * 180.02562 * 7 6 5 9 9 C 1.38295 * 120.05464 * 0.02562 * 8 7 6 10 10 C 1.38241 * 120.11049 * 0.02562 * 9 8 7 11 11 C 1.50699 * 119.97181 * 179.97438 * 10 9 8 12 12 C 1.38171 * 120.05497 * 359.68372 * 10 9 8 13 13 C 1.50701 * 109.47287 * 174.29349 * 3 2 1 14 14 O 1.21279 * 120.00044 * 112.62765 * 13 3 2 15 15 N 1.34778 * 119.99796 * 292.62343 * 13 3 2 16 16 C 1.47866 * 126.94506 * 355.23528 * 15 13 3 17 17 C 1.58437 * 104.83153 * 182.30147 * 16 15 13 18 18 H 1.08996 * 116.62728 * 159.51516 * 17 16 15 19 19 C 1.57437 * 99.62260 * 32.32291 * 17 16 15 20 20 C 1.49289 * 126.94347 * 175.23152 * 15 13 3 21 21 H 1.09005 * 116.15336 * 15.84005 * 20 15 13 22 22 C 1.56022 * 104.09234 * 246.70290 * 20 15 13 23 23 N 1.47873 * 105.10381 * 287.91791 * 22 20 15 24 24 C 1.36933 * 126.94773 * 181.97699 * 23 22 20 25 25 H 1.07998 * 120.00261 * 179.74939 * 24 23 22 26 26 C 1.38814 * 119.99626 * 0.02792 * 24 23 22 27 27 N 1.31620 * 120.00391 * 0.02562 * 26 24 23 28 28 Si 1.86796 * 119.99744 * 179.97438 * 26 24 23 29 29 H 1.48505 * 109.47397 * 60.00233 * 28 26 24 30 30 H 1.48506 * 109.47425 * 180.02562 * 28 26 24 31 31 H 1.48507 * 109.47351 * 300.00085 * 28 26 24 32 32 H 1.09000 * 109.47153 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47171 * 300.00044 * 1 2 3 34 34 H 1.08993 * 109.46955 * 60.00070 * 1 2 3 35 35 H 1.08994 * 109.47398 * 239.99133 * 2 1 3 36 36 H 1.09010 * 109.46723 * 119.99910 * 2 1 3 37 37 H 1.08000 * 120.02996 * 0.02562 * 7 6 5 38 38 H 1.07998 * 119.97547 * 179.97438 * 8 7 6 39 39 H 1.08000 * 119.94657 * 179.97438 * 9 8 7 40 40 H 1.09001 * 109.47430 * 90.00411 * 11 10 9 41 41 H 1.09002 * 109.47287 * 210.00261 * 11 10 9 42 42 H 1.08996 * 109.47364 * 330.00109 * 11 10 9 43 43 H 1.08001 * 120.02822 * 180.29691 * 12 10 9 44 44 H 1.08998 * 110.31616 * 300.90364 * 16 15 13 45 45 H 1.09002 * 110.31773 * 63.09054 * 16 15 13 46 46 H 1.09001 * 112.53244 * 192.40877 * 19 17 16 47 47 H 1.09002 * 112.31332 * 64.87307 * 19 17 16 48 48 H 1.09001 * 110.31559 * 169.01400 * 22 20 15 49 49 H 1.09000 * 110.31465 * 46.82365 * 22 20 15 50 50 H 0.96994 * 120.00187 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5957 1.9850 0.8345 5 8 1.6763 2.0763 -1.2281 6 6 0.5257 2.7995 -1.2319 7 6 -0.2596 2.8620 -0.0897 8 6 -1.4288 3.5974 -0.0962 9 6 -1.8172 4.2706 -1.2401 10 6 -1.0370 4.2090 -2.3797 11 6 -1.4635 4.9434 -3.6246 12 6 0.1365 3.4797 -2.3763 13 6 3.5404 1.4447 0.1413 14 8 4.2356 1.8174 -0.7799 15 7 4.1096 1.0327 1.2914 16 6 3.4148 0.6429 2.5371 17 6 4.5761 0.3123 3.5628 18 1 4.3152 0.3370 4.6208 19 6 5.6656 1.3340 3.0651 20 6 5.5689 0.8776 1.5651 21 1 6.2441 1.3671 0.8631 22 6 5.7598 -0.6600 1.7479 23 7 5.1418 -0.9724 3.0545 24 6 5.0928 -2.1942 3.6707 25 1 4.6131 -2.2949 4.6331 26 6 5.6650 -3.3024 3.0611 27 7 6.2549 -3.1787 1.8911 28 14 5.5988 -4.9690 3.9021 29 1 4.1821 -5.3641 4.1075 30 1 6.2768 -5.9801 3.0515 31 1 6.2856 -4.8880 5.2164 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3633 0.5138 -0.8899 35 1 1.8933 -0.5139 -0.8898 36 1 1.8933 -0.5139 0.8901 37 1 0.0430 2.3361 0.8038 38 1 -2.0406 3.6460 0.7924 39 1 -2.7319 4.8447 -1.2435 40 1 -1.0461 5.9502 -3.6136 41 1 -1.1014 4.4096 -4.5034 42 1 -2.5514 5.0014 -3.6576 43 1 0.7481 3.4358 -3.2654 44 1 2.8097 1.4704 2.9078 45 1 2.7918 -0.2347 2.3643 46 1 6.6481 1.1396 3.4953 47 1 5.3560 2.3698 3.2043 48 1 6.8205 -0.9107 1.7615 49 1 5.2522 -1.2019 0.9499 50 1 6.6550 -3.9529 1.4653 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032678729.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:20 Heat of formation + Delta-G solvation = 15.056557 kcal Electronic energy + Delta-G solvation = -31140.846712 eV Core-core repulsion = 27135.390223 eV Total energy + Delta-G solvation = -4005.456489 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.84583 -39.85838 -38.32575 -37.15146 -34.11493 -33.41028 -32.68949 -31.50604 -30.33795 -29.19784 -28.54221 -27.18832 -27.14629 -25.26743 -23.62380 -22.70339 -22.53169 -21.47979 -20.18061 -19.84995 -18.58702 -18.30949 -17.27443 -16.37821 -16.21134 -15.97732 -15.70550 -15.52197 -14.83736 -14.61341 -14.51841 -14.01411 -13.94623 -13.78361 -13.48138 -13.29586 -13.14804 -12.86583 -12.53195 -12.30357 -12.18998 -12.04963 -11.99819 -11.79119 -11.73786 -11.66500 -11.37702 -11.23784 -11.09994 -10.93543 -10.89604 -10.69810 -10.64191 -10.51691 -10.27922 -10.13579 -9.68932 -9.40411 -8.92735 -8.75412 -8.21223 -8.09158 -6.98721 -5.81961 -3.17013 1.17041 1.33317 2.67820 2.88249 3.33826 3.38340 3.40632 3.59902 3.65555 4.37132 4.52581 4.57925 4.68967 4.72575 4.78776 4.94679 4.99475 5.05241 5.08956 5.15409 5.22930 5.29949 5.35575 5.37193 5.39519 5.47323 5.54212 5.55400 5.63058 5.69748 5.71820 5.82905 5.87491 5.92607 6.02541 6.07992 6.20800 6.22512 6.26669 6.29167 6.33655 6.42940 6.43401 6.52717 6.59277 6.67113 7.33051 7.37118 7.43756 7.66281 7.96475 8.04483 8.47309 9.04536 9.65576 10.34125 11.29869 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018902 B = 0.002700 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.975253 B =10366.798279 C =10784.668288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.143 4.143 3 C 0.074 3.926 4 H 0.096 0.904 5 O -0.282 6.282 6 C 0.141 3.859 7 C -0.218 4.218 8 C -0.076 4.076 9 C -0.165 4.165 10 C -0.049 4.049 11 C -0.114 4.114 12 C -0.155 4.155 13 C 0.530 3.470 14 O -0.533 6.533 15 N -0.602 5.602 16 C 0.073 3.927 17 C 0.144 3.856 18 H 0.109 0.891 19 C -0.150 4.150 20 C 0.100 3.900 21 H 0.114 0.886 22 C 0.174 3.826 23 N -0.596 5.596 24 C -0.235 4.235 25 H 0.081 0.919 26 C -0.004 4.004 27 N -0.918 5.918 28 Si 0.913 3.087 29 H -0.285 1.285 30 H -0.290 1.290 31 H -0.284 1.284 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.133 0.867 38 H 0.123 0.877 39 H 0.120 0.880 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.130 0.870 44 H 0.053 0.947 45 H 0.076 0.924 46 H 0.086 0.914 47 H 0.065 0.935 48 H 0.057 0.943 49 H 0.048 0.952 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.962 14.097 -2.916 20.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.181 4.181 3 C 0.014 3.986 4 H 0.114 0.886 5 O -0.194 6.194 6 C 0.095 3.905 7 C -0.237 4.237 8 C -0.094 4.094 9 C -0.183 4.183 10 C -0.050 4.050 11 C -0.171 4.171 12 C -0.173 4.173 13 C 0.317 3.683 14 O -0.410 6.410 15 N -0.337 5.337 16 C -0.052 4.052 17 C 0.035 3.965 18 H 0.126 0.874 19 C -0.190 4.190 20 C -0.002 4.002 21 H 0.131 0.869 22 C 0.049 3.951 23 N -0.320 5.320 24 C -0.363 4.363 25 H 0.098 0.902 26 C -0.201 4.201 27 N -0.564 5.564 28 Si 0.743 3.257 29 H -0.211 1.211 30 H -0.216 1.216 31 H -0.211 1.211 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.099 0.901 36 H 0.113 0.887 37 H 0.150 0.850 38 H 0.141 0.859 39 H 0.138 0.862 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.148 0.852 44 H 0.071 0.929 45 H 0.094 0.906 46 H 0.105 0.895 47 H 0.084 0.916 48 H 0.075 0.925 49 H 0.066 0.934 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -14.391 13.982 -3.722 20.407 hybrid contribution -0.149 -1.092 0.603 1.256 sum -14.540 12.890 -3.118 19.679 Atomic orbital electron populations 1.21963 0.94660 1.02461 1.01926 1.22054 0.96941 0.93929 1.05178 1.22314 0.93752 0.95374 0.87137 0.88646 1.86219 1.37346 1.62168 1.33699 1.19077 0.85885 0.91160 0.94330 1.21407 0.97932 1.05782 0.98545 1.20890 0.95384 0.95173 0.97988 1.20894 1.01050 1.03163 0.93169 1.19680 0.93439 0.96092 0.95749 1.20801 1.01602 0.99949 0.94719 1.20294 0.98306 1.01064 0.97666 1.19646 0.88689 0.78058 0.81939 1.90695 1.63977 1.47541 1.38813 1.49050 1.08844 1.64343 1.11475 1.23936 0.97247 0.98530 0.85525 1.23684 0.90430 0.87025 0.95397 0.87363 1.24191 1.00968 0.98147 0.95668 1.24356 0.80428 0.99924 0.95491 0.86853 1.21953 0.98477 0.86715 0.88002 1.45248 1.64504 1.03070 1.19147 1.18990 1.32148 0.83560 1.01567 0.90167 1.24824 1.00242 0.98071 0.96972 1.69898 1.41298 1.29390 1.15845 0.86203 0.77588 0.83532 0.78401 1.21139 1.21615 1.21086 0.91893 0.92408 0.92243 0.90102 0.88713 0.84974 0.85861 0.86155 0.90945 0.91321 0.91393 0.85206 0.92899 0.90596 0.89523 0.91627 0.92452 0.93401 0.93452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 8.40 37.16 0.31 -1.46 16 2 C -0.14 -2.05 5.56 -26.74 -0.15 -2.20 16 3 C 0.07 1.13 2.01 -27.89 -0.06 1.07 16 4 H 0.10 1.24 5.47 -51.92 -0.28 0.96 16 5 O -0.28 -4.60 9.21 -39.22 -0.36 -4.96 16 6 C 0.14 1.93 5.50 -39.22 -0.22 1.72 16 7 C -0.22 -2.51 7.03 -39.43 -0.28 -2.79 16 8 C -0.08 -0.75 10.04 -39.60 -0.40 -1.15 16 9 C -0.16 -1.57 9.70 -39.56 -0.38 -1.95 16 10 C -0.05 -0.51 5.88 -104.65 -0.62 -1.12 16 11 C -0.11 -0.84 10.01 36.01 0.36 -0.48 16 12 C -0.15 -1.92 9.64 -39.43 -0.38 -2.30 16 13 C 0.53 9.98 7.23 -10.98 -0.08 9.90 16 14 O -0.53 -12.00 16.85 -14.24 -0.24 -12.24 16 15 N -0.60 -10.84 2.95 -155.20 -0.46 -11.30 16 16 C 0.07 1.17 5.73 -0.29 0.00 1.16 16 17 C 0.14 2.52 5.63 -60.96 -0.34 2.18 16 18 H 0.11 1.68 8.14 -51.93 -0.42 1.26 16 19 C -0.15 -2.45 6.86 -22.10 -0.15 -2.60 16 20 C 0.10 1.90 5.20 -62.55 -0.33 1.58 16 21 H 0.11 2.13 8.04 -51.93 -0.42 1.72 16 22 C 0.17 4.04 4.75 -1.67 -0.01 4.03 16 23 N -0.60 -13.71 3.02 -154.61 -0.47 -14.17 16 24 C -0.23 -6.02 10.37 -15.06 -0.16 -6.17 16 25 H 0.08 1.95 7.83 -52.49 -0.41 1.54 16 26 C 0.00 -0.11 5.49 -17.43 -0.10 -0.20 16 27 N -0.92 -26.13 10.56 55.49 0.59 -25.55 16 28 Si 0.91 21.22 29.55 -169.99 -5.02 16.19 16 29 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 30 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 31 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.58 6.60 -51.93 -0.34 0.23 16 34 H 0.06 0.72 6.20 -51.93 -0.32 0.40 16 35 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.09 1.42 5.52 -51.92 -0.29 1.13 16 37 H 0.13 1.39 4.20 -52.49 -0.22 1.17 16 38 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 39 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 42 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 43 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 44 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.08 1.29 6.01 -51.93 -0.31 0.98 16 46 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 47 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 48 H 0.06 1.48 7.46 -51.93 -0.39 1.09 16 49 H 0.05 1.28 7.67 -51.93 -0.40 0.89 16 50 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 389.13 15.07 5.86 5.86 Total: -1.00 -31.79 389.13 -10.65 -42.43 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -7.58 Total: 4.50 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -2.96 Total: -0.78 kcal Atomic # 7 Polarization: -50.68 SS G_CDS: -0.34 Total: -51.02 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.60 Total: -17.20 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.79 -10.65 -42.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032678729.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.491 kcal (2) G-P(sol) polarization free energy of solvation -31.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds