Wall clock time and date at job start Wed Apr 1 2020 03:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47382 * 2 1 4 4 H 1.09007 * 109.47435 * 54.29326 * 3 2 1 5 5 O 1.42906 * 109.46981 * 294.29159 * 3 2 1 6 6 C 1.35898 * 116.99933 * 94.65753 * 5 3 2 7 7 C 1.38758 * 120.05537 * 357.93163 * 6 5 3 8 8 C 1.38119 * 119.94523 * 180.02562 * 7 6 5 9 9 C 1.38295 * 120.05464 * 0.02562 * 8 7 6 10 10 C 1.38241 * 120.11049 * 0.02562 * 9 8 7 11 11 C 1.50699 * 119.97181 * 179.97438 * 10 9 8 12 12 C 1.38171 * 120.05497 * 359.68372 * 10 9 8 13 13 C 1.50701 * 109.47287 * 174.29349 * 3 2 1 14 14 O 1.21279 * 120.00044 * 112.62765 * 13 3 2 15 15 N 1.34778 * 119.99796 * 292.62343 * 13 3 2 16 16 C 1.47866 * 126.94506 * 355.23528 * 15 13 3 17 17 C 1.58437 * 104.83153 * 182.30147 * 16 15 13 18 18 H 1.08996 * 116.62728 * 159.51516 * 17 16 15 19 19 C 1.57437 * 99.62260 * 32.32291 * 17 16 15 20 20 C 1.49289 * 126.94347 * 175.23152 * 15 13 3 21 21 H 1.09005 * 116.15336 * 15.84005 * 20 15 13 22 22 C 1.56022 * 104.09234 * 246.70290 * 20 15 13 23 23 N 1.47873 * 105.10381 * 287.91791 * 22 20 15 24 24 C 1.36933 * 126.94773 * 181.97699 * 23 22 20 25 25 H 1.07998 * 120.00261 * 179.74939 * 24 23 22 26 26 C 1.38814 * 119.99626 * 0.02792 * 24 23 22 27 27 N 1.31620 * 120.00391 * 0.02562 * 26 24 23 28 28 Si 1.86796 * 119.99744 * 179.97438 * 26 24 23 29 29 H 1.48505 * 109.47397 * 60.00233 * 28 26 24 30 30 H 1.48506 * 109.47425 * 180.02562 * 28 26 24 31 31 H 1.48507 * 109.47351 * 300.00085 * 28 26 24 32 32 H 1.09000 * 109.47153 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47171 * 300.00044 * 1 2 3 34 34 H 1.08993 * 109.46955 * 60.00070 * 1 2 3 35 35 H 1.08994 * 109.47398 * 239.99133 * 2 1 3 36 36 H 1.09010 * 109.46723 * 119.99910 * 2 1 3 37 37 H 1.08000 * 120.02996 * 0.02562 * 7 6 5 38 38 H 1.07998 * 119.97547 * 179.97438 * 8 7 6 39 39 H 1.08000 * 119.94657 * 179.97438 * 9 8 7 40 40 H 1.09001 * 109.47430 * 90.00411 * 11 10 9 41 41 H 1.09002 * 109.47287 * 210.00261 * 11 10 9 42 42 H 1.08996 * 109.47364 * 330.00109 * 11 10 9 43 43 H 1.08001 * 120.02822 * 180.29691 * 12 10 9 44 44 H 1.08998 * 110.31616 * 300.90364 * 16 15 13 45 45 H 1.09002 * 110.31773 * 63.09054 * 16 15 13 46 46 H 1.09001 * 112.53244 * 192.40877 * 19 17 16 47 47 H 1.09002 * 112.31332 * 64.87307 * 19 17 16 48 48 H 1.09001 * 110.31559 * 169.01400 * 22 20 15 49 49 H 1.09000 * 110.31465 * 46.82365 * 22 20 15 50 50 H 0.96994 * 120.00187 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5957 1.9850 0.8345 5 8 1.6763 2.0763 -1.2281 6 6 0.5257 2.7995 -1.2319 7 6 -0.2596 2.8620 -0.0897 8 6 -1.4288 3.5974 -0.0962 9 6 -1.8172 4.2706 -1.2401 10 6 -1.0370 4.2090 -2.3797 11 6 -1.4635 4.9434 -3.6246 12 6 0.1365 3.4797 -2.3763 13 6 3.5404 1.4447 0.1413 14 8 4.2356 1.8174 -0.7799 15 7 4.1096 1.0327 1.2914 16 6 3.4148 0.6429 2.5371 17 6 4.5761 0.3123 3.5628 18 1 4.3152 0.3370 4.6208 19 6 5.6656 1.3340 3.0651 20 6 5.5689 0.8776 1.5651 21 1 6.2441 1.3671 0.8631 22 6 5.7598 -0.6600 1.7479 23 7 5.1418 -0.9724 3.0545 24 6 5.0928 -2.1942 3.6707 25 1 4.6131 -2.2949 4.6331 26 6 5.6650 -3.3024 3.0611 27 7 6.2549 -3.1787 1.8911 28 14 5.5988 -4.9690 3.9021 29 1 4.1821 -5.3641 4.1075 30 1 6.2768 -5.9801 3.0515 31 1 6.2856 -4.8880 5.2164 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3633 0.5138 -0.8899 35 1 1.8933 -0.5139 -0.8898 36 1 1.8933 -0.5139 0.8901 37 1 0.0430 2.3361 0.8038 38 1 -2.0406 3.6460 0.7924 39 1 -2.7319 4.8447 -1.2435 40 1 -1.0461 5.9502 -3.6136 41 1 -1.1014 4.4096 -4.5034 42 1 -2.5514 5.0014 -3.6576 43 1 0.7481 3.4358 -3.2654 44 1 2.8097 1.4704 2.9078 45 1 2.7918 -0.2347 2.3643 46 1 6.6481 1.1396 3.4953 47 1 5.3560 2.3698 3.2043 48 1 6.8205 -0.9107 1.7615 49 1 5.2522 -1.2019 0.9499 50 1 6.6550 -3.9529 1.4653 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032678729.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:18 Heat of formation + Delta-G solvation = -1.864975 kcal Electronic energy + Delta-G solvation = -31141.580485 eV Core-core repulsion = 27135.390223 eV Total energy + Delta-G solvation = -4006.190262 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -42.05334 -41.14887 -39.56086 -38.40409 -35.63459 -34.85660 -33.45524 -33.15404 -31.23799 -30.80688 -30.15965 -28.34773 -27.86089 -26.98980 -25.26708 -23.59313 -23.47450 -22.84697 -21.49018 -21.27170 -20.10619 -19.38603 -18.81941 -17.89548 -17.52974 -17.05835 -16.86936 -16.74664 -16.21073 -16.14890 -15.74048 -15.36361 -15.06901 -14.83453 -14.75032 -14.41943 -14.14428 -13.83391 -13.80747 -13.66025 -13.48365 -13.24563 -13.20731 -12.99887 -12.92568 -12.86608 -12.73677 -12.66853 -12.51436 -12.34624 -12.16826 -12.16043 -12.05524 -11.90241 -11.73275 -11.54214 -11.47374 -10.91403 -10.67465 -9.72538 -9.62277 -9.11016 -8.90611 -7.83786 -5.19459 0.37513 0.49146 1.35686 1.47784 1.49885 1.50570 1.56209 2.41830 2.49211 2.80594 3.24482 3.33298 3.42735 3.52837 3.63857 3.74964 3.81066 3.91854 3.93951 3.99399 4.08014 4.18522 4.21531 4.29906 4.37852 4.46170 4.53390 4.56158 4.58736 4.68365 4.78176 4.84033 4.85934 4.89161 4.95674 5.00422 5.01798 5.03478 5.13573 5.19729 5.25835 5.26831 5.39184 5.45159 5.49889 5.51245 5.65512 5.66796 5.87092 6.09646 6.37630 6.53545 6.99867 7.03047 7.71757 8.41904 9.27182 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018902 B = 0.002700 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.975253 B =10366.798279 C =10784.668288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.138 4.138 3 C 0.086 3.914 4 H 0.127 0.873 5 O -0.313 6.313 6 C 0.111 3.889 7 C -0.221 4.221 8 C -0.074 4.074 9 C -0.162 4.162 10 C -0.053 4.053 11 C -0.114 4.114 12 C -0.178 4.178 13 C 0.521 3.479 14 O -0.582 6.582 15 N -0.601 5.601 16 C 0.077 3.923 17 C 0.140 3.860 18 H 0.142 0.858 19 C -0.128 4.128 20 C 0.099 3.901 21 H 0.108 0.892 22 C 0.188 3.812 23 N -0.614 5.614 24 C -0.228 4.228 25 H 0.099 0.901 26 C -0.071 4.071 27 N -0.957 5.957 28 Si 0.975 3.025 29 H -0.275 1.275 30 H -0.306 1.306 31 H -0.274 1.274 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.088 0.912 37 H 0.144 0.856 38 H 0.155 0.845 39 H 0.150 0.850 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.087 0.913 43 H 0.118 0.882 44 H 0.104 0.896 45 H 0.066 0.934 46 H 0.083 0.917 47 H 0.103 0.897 48 H 0.018 0.982 49 H -0.003 1.003 50 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.622 16.406 -0.098 24.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.176 4.176 3 C 0.027 3.973 4 H 0.144 0.856 5 O -0.226 6.226 6 C 0.066 3.934 7 C -0.239 4.239 8 C -0.092 4.092 9 C -0.180 4.180 10 C -0.053 4.053 11 C -0.170 4.170 12 C -0.196 4.196 13 C 0.309 3.691 14 O -0.462 6.462 15 N -0.335 5.335 16 C -0.047 4.047 17 C 0.034 3.966 18 H 0.159 0.841 19 C -0.167 4.167 20 C -0.004 4.004 21 H 0.126 0.874 22 C 0.062 3.938 23 N -0.338 5.338 24 C -0.357 4.357 25 H 0.116 0.884 26 C -0.264 4.264 27 N -0.607 5.607 28 Si 0.804 3.196 29 H -0.201 1.201 30 H -0.233 1.233 31 H -0.200 1.200 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.106 0.894 37 H 0.161 0.839 38 H 0.173 0.827 39 H 0.167 0.833 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.106 0.894 43 H 0.136 0.864 44 H 0.122 0.878 45 H 0.084 0.916 46 H 0.102 0.898 47 H 0.121 0.879 48 H 0.036 0.964 49 H 0.016 0.984 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -18.103 16.329 -0.844 24.394 hybrid contribution 0.930 -1.715 -0.307 1.975 sum -17.173 14.614 -1.151 22.579 Atomic orbital electron populations 1.21906 0.92040 1.03208 1.02829 1.21988 0.99090 0.93111 1.03361 1.22213 0.90826 0.96078 0.88206 0.85626 1.86178 1.39107 1.63131 1.34185 1.19368 0.85863 0.92271 0.95868 1.21538 0.98270 1.06195 0.97914 1.21293 0.94772 0.93905 0.99204 1.21312 1.01592 1.02521 0.92536 1.20026 0.92517 0.95421 0.97324 1.20865 1.02861 0.99909 0.93377 1.20469 0.99521 1.02296 0.97361 1.20429 0.90379 0.77049 0.81217 1.90659 1.65447 1.49785 1.40323 1.49105 1.08432 1.63689 1.12234 1.23948 0.96646 1.00187 0.83878 1.24129 0.90927 0.84228 0.97336 0.84059 1.24101 1.00645 0.99739 0.92220 1.24190 0.81610 0.96654 0.97933 0.87372 1.21511 0.95550 0.89389 0.87332 1.45483 1.64849 1.04506 1.18977 1.19502 1.29982 0.84477 1.01704 0.88375 1.25647 1.01252 1.01680 0.97773 1.70149 1.43432 1.29340 1.17741 0.85195 0.77720 0.79335 0.77332 1.20109 1.23331 1.19987 0.91246 0.89860 0.92844 0.93061 0.89404 0.83906 0.82739 0.83260 0.90080 0.91460 0.89433 0.86365 0.87785 0.91550 0.89826 0.87910 0.96355 0.98443 0.94812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.40 71.98 0.60 -2.47 16 2 C -0.14 -3.95 5.56 30.59 0.17 -3.78 16 3 C 0.09 2.59 2.01 29.85 0.06 2.65 16 4 H 0.13 2.92 5.47 -2.38 -0.01 2.91 16 5 O -0.31 -10.44 9.21 -73.47 -0.68 -11.12 16 6 C 0.11 2.98 5.50 22.51 0.12 3.10 16 7 C -0.22 -4.48 7.03 22.37 0.16 -4.33 16 8 C -0.07 -1.16 10.04 22.25 0.22 -0.93 16 9 C -0.16 -2.49 9.70 22.28 0.22 -2.27 16 10 C -0.05 -0.98 5.88 -19.88 -0.12 -1.10 16 11 C -0.11 -1.43 10.01 71.24 0.71 -0.72 16 12 C -0.18 -4.42 9.64 22.37 0.22 -4.20 16 13 C 0.52 19.96 7.23 87.66 0.63 20.60 16 14 O -0.58 -27.51 16.85 15.91 0.27 -27.24 16 15 N -0.60 -21.39 2.95 -763.31 -2.25 -23.64 16 16 C 0.08 2.24 5.73 88.06 0.50 2.75 16 17 C 0.14 4.50 5.63 47.96 0.27 4.77 16 18 H 0.14 3.67 8.14 -2.39 -0.02 3.65 16 19 C -0.13 -3.86 6.86 33.59 0.23 -3.63 16 20 C 0.10 3.83 5.20 46.93 0.24 4.07 16 21 H 0.11 4.26 8.04 -2.38 -0.02 4.25 16 22 C 0.19 9.25 4.75 87.16 0.41 9.66 16 23 N -0.61 -28.23 3.02 -643.08 -1.94 -30.17 16 24 C -0.23 -11.62 10.37 84.03 0.87 -10.75 16 25 H 0.10 4.56 7.83 -2.91 -0.02 4.54 16 26 C -0.07 -3.90 5.49 84.86 0.47 -3.43 16 27 N -0.96 -57.70 10.56 21.65 0.23 -57.47 16 28 Si 0.98 44.41 29.55 68.60 2.03 46.43 16 29 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 30 H -0.31 -14.61 7.11 99.48 0.71 -13.90 16 31 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 32 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.08 1.36 6.60 -2.39 -0.02 1.35 16 34 H 0.05 1.23 6.20 -2.39 -0.01 1.22 16 35 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.09 2.62 5.52 -2.38 -0.01 2.61 16 37 H 0.14 2.45 4.20 -2.91 -0.01 2.44 16 38 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 39 H 0.15 1.43 8.06 -2.91 -0.02 1.40 16 40 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.07 0.86 8.09 -2.39 -0.02 0.84 16 42 H 0.09 0.76 8.08 -2.39 -0.02 0.74 16 43 H 0.12 3.04 8.06 -2.91 -0.02 3.02 16 44 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.07 2.11 6.01 -2.39 -0.01 2.10 16 46 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 47 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 48 H 0.02 1.02 7.46 -2.39 -0.02 1.01 16 49 H 0.00 -0.15 7.67 -2.39 -0.02 -0.17 16 50 H 0.24 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -75.96 389.13 4.60 -71.36 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: 0.94 Total: 21.86 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: 6.00 Total: 10.00 kcal Atomic # 7 Polarization: -107.32 SS G_CDS: -3.96 Total: -111.28 kcal Atomic # 8 Polarization: -37.95 SS G_CDS: -0.41 Total: -38.36 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -75.96 4.60 -71.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032678729.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.491 kcal (2) G-P(sol) polarization free energy of solvation -75.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds