Wall clock time and date at job start Wed Apr 1 2020 02:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47337 * 2 1 4 4 H 1.09003 * 109.49615 * 55.06900 * 3 2 1 5 5 C 1.53186 * 109.50063 * 295.00345 * 3 2 1 6 6 N 1.46920 * 108.77899 * 185.41347 * 5 3 2 7 7 C 1.34777 * 120.63270 * 233.63058 * 6 5 3 8 8 O 1.21553 * 119.99766 * 356.21489 * 7 6 5 9 9 C 1.47844 * 120.00352 * 176.21253 * 7 6 5 10 10 C 1.39601 * 120.12949 * 50.70213 * 9 7 6 11 11 C 1.37996 * 119.89191 * 179.76940 * 10 9 7 12 12 C 1.38136 * 120.10690 * 0.50145 * 11 10 9 13 13 C 1.38753 * 120.27835 * 359.75564 * 12 11 10 14 14 C 1.37710 * 120.18054 * 359.97438 * 13 12 11 15 15 C 1.51106 * 107.26135 * 179.97438 * 13 12 11 16 16 O 1.43932 * 105.95413 * 342.27708 * 15 13 12 17 17 C 1.43934 * 104.96872 * 28.52255 * 16 15 13 18 18 C 1.46927 * 118.73896 * 53.60563 * 6 5 3 19 19 C 1.53190 * 108.77494 * 306.39019 * 18 6 5 20 20 C 1.53040 * 109.49736 * 175.15936 * 3 2 1 21 21 H 1.08994 * 109.46244 * 301.34027 * 20 3 2 22 22 N 1.46499 * 109.45747 * 61.29856 * 20 3 2 23 23 C 1.36937 * 120.00099 * 204.99281 * 22 20 3 24 24 H 1.08000 * 120.00088 * 0.02562 * 23 22 20 25 25 C 1.38813 * 120.00233 * 179.97438 * 23 22 20 26 26 N 1.31621 * 119.99913 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 120.00100 * 180.02562 * 25 23 22 28 28 H 1.48495 * 109.47383 * 60.00311 * 27 25 23 29 29 H 1.48505 * 109.47006 * 180.02562 * 27 25 23 30 30 H 1.48503 * 109.47131 * 299.99848 * 27 25 23 31 31 H 1.08992 * 109.46960 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47048 * 59.99467 * 1 2 3 33 33 H 1.09003 * 109.46991 * 299.99715 * 1 2 3 34 34 H 1.09003 * 109.47500 * 119.99990 * 2 1 3 35 35 H 1.09003 * 109.46991 * 240.00285 * 2 1 3 36 36 H 1.09002 * 109.58621 * 305.20132 * 5 3 2 37 37 H 1.09001 * 109.58703 * 65.61780 * 5 3 2 38 38 H 1.08003 * 120.05372 * 0.02562 * 10 9 7 39 39 H 1.08000 * 119.94995 * 180.25333 * 11 10 9 40 40 H 1.07998 * 120.09656 * 180.02562 * 14 13 12 41 41 H 1.08998 * 110.15869 * 101.40208 * 15 13 12 42 42 H 1.08998 * 110.15322 * 223.16016 * 15 13 12 43 43 H 1.09006 * 110.14825 * 212.35213 * 17 16 15 44 44 H 1.08996 * 110.15657 * 90.59978 * 17 16 15 45 45 H 1.08991 * 109.58906 * 66.18242 * 18 6 5 46 46 H 1.08999 * 109.58399 * 186.60674 * 18 6 5 47 47 H 1.08998 * 109.49968 * 174.58231 * 19 18 6 48 48 H 1.08999 * 109.50308 * 294.65617 * 19 18 6 49 49 H 0.96999 * 120.00059 * 24.99975 * 22 20 3 50 50 H 0.97003 * 120.00379 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6066 1.9816 0.8424 5 6 1.6351 2.1281 -1.3087 6 7 2.2416 3.4656 -1.3492 7 6 1.4816 4.5581 -1.5627 8 8 0.2941 4.4369 -1.7922 9 6 2.0922 5.9038 -1.5176 10 6 3.2441 6.1757 -2.2579 11 6 3.8072 7.4349 -2.2160 12 6 3.2389 8.4224 -1.4350 13 6 2.0971 8.1569 -0.6927 14 6 1.5223 6.9061 -0.7303 15 6 1.7343 9.4267 0.0416 16 8 2.9163 10.2478 0.0198 17 6 3.6132 9.8644 -1.1798 18 6 3.6923 3.5898 -1.1522 19 6 4.0741 2.8880 0.1549 20 6 3.5656 1.4448 0.1217 21 1 3.8574 0.9358 1.0403 22 7 4.1480 0.7484 -1.0280 23 6 5.3861 0.1726 -0.9246 24 1 5.9331 0.2316 0.0048 25 6 5.9377 -0.4877 -2.0139 26 7 5.2709 -0.5600 -3.1463 27 14 7.6264 -1.2738 -1.8725 28 1 7.6053 -2.3029 -0.8022 29 1 7.9858 -1.9105 -3.1650 30 1 8.6308 -0.2322 -1.5381 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 0.5138 0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 1.9907 1.5398 -2.1546 37 1 0.5497 2.2174 -1.3537 38 1 3.6914 5.4031 -2.8657 39 1 4.6960 7.6475 -2.7915 40 1 0.6333 6.7010 -0.1523 41 1 0.9151 9.9342 -0.4677 42 1 1.4543 9.1989 1.0701 43 1 4.6898 9.9526 -1.0330 44 1 3.2950 10.4885 -2.0148 45 1 4.2157 3.1209 -1.9852 46 1 3.9642 4.6438 -1.0939 47 1 5.1585 2.8890 0.2650 48 1 3.6225 3.4141 0.9959 49 1 3.6566 0.6952 -1.8627 50 1 5.6565 -1.0212 -3.9077 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037933430.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:09 Heat of formation + Delta-G solvation = -32.970461 kcal Electronic energy + Delta-G solvation = -30985.093703 eV Core-core repulsion = 26977.554606 eV Total energy + Delta-G solvation = -4007.539097 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.10176 -40.02987 -38.08513 -37.10824 -34.51105 -33.78095 -31.88635 -31.84231 -31.61090 -29.45376 -28.61642 -28.19394 -25.91441 -24.64619 -23.75391 -23.57589 -22.32187 -21.97326 -20.79904 -19.79358 -18.41495 -17.45728 -17.18893 -16.80177 -16.64548 -16.08288 -15.98810 -15.16443 -14.77747 -14.67231 -14.50173 -14.24917 -14.01754 -13.80523 -13.65428 -13.30497 -13.23930 -13.09606 -12.98736 -12.86653 -12.53506 -12.43755 -12.23586 -11.96137 -11.73327 -11.43521 -11.23664 -11.09841 -10.97797 -10.82437 -10.75888 -10.36293 -10.33084 -10.29856 -10.22523 -9.82236 -9.71450 -9.57857 -9.17269 -8.96344 -8.75436 -8.28081 -7.01140 -5.82268 -3.10834 0.69932 1.04499 2.71043 3.09337 3.39356 3.44884 3.45451 3.47892 3.59064 3.91340 4.30071 4.51703 4.54469 4.64051 4.94999 5.01207 5.03449 5.06470 5.15002 5.21166 5.24661 5.30984 5.38527 5.46823 5.50532 5.53133 5.55937 5.67018 5.69852 5.77443 5.79375 5.87770 5.96152 5.98308 6.05104 6.11286 6.12921 6.16172 6.31311 6.34929 6.36463 6.39460 6.52576 6.55217 6.61572 6.68057 6.74000 6.91100 6.97347 7.62149 7.65177 8.26719 8.36188 9.47860 10.04201 10.39453 11.39971 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012005 B = 0.003135 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.812062 B = 8928.742548 C =10457.277671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.110 4.110 3 C -0.103 4.103 4 H 0.066 0.934 5 C 0.119 3.881 6 N -0.591 5.591 7 C 0.556 3.444 8 O -0.546 6.546 9 C -0.110 4.110 10 C -0.080 4.080 11 C -0.096 4.096 12 C -0.119 4.119 13 C -0.140 4.140 14 C -0.046 4.046 15 C 0.093 3.907 16 O -0.361 6.361 17 C 0.090 3.910 18 C 0.104 3.896 19 C -0.149 4.149 20 C 0.178 3.822 21 H 0.051 0.949 22 N -0.718 5.718 23 C -0.238 4.238 24 H 0.069 0.931 25 C -0.011 4.011 26 N -0.932 5.932 27 Si 0.904 3.096 28 H -0.287 1.287 29 H -0.292 1.292 30 H -0.287 1.287 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.047 0.953 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.140 0.860 39 H 0.133 0.867 40 H 0.132 0.868 41 H 0.079 0.921 42 H 0.099 0.901 43 H 0.100 0.900 44 H 0.079 0.921 45 H 0.087 0.913 46 H 0.078 0.922 47 H 0.074 0.926 48 H 0.048 0.952 49 H 0.384 0.616 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.276 16.777 4.840 18.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.123 4.123 4 H 0.084 0.916 5 C -0.003 4.003 6 N -0.322 5.322 7 C 0.344 3.656 8 O -0.425 6.425 9 C -0.113 4.113 10 C -0.099 4.099 11 C -0.114 4.114 12 C -0.119 4.119 13 C -0.140 4.140 14 C -0.065 4.065 15 C 0.017 3.983 16 O -0.280 6.280 17 C 0.014 3.986 18 C -0.018 4.018 19 C -0.191 4.191 20 C 0.068 3.932 21 H 0.069 0.931 22 N -0.361 5.361 23 C -0.370 4.370 24 H 0.087 0.913 25 C -0.207 4.207 26 N -0.581 5.581 27 Si 0.735 3.265 28 H -0.214 1.214 29 H -0.218 1.218 30 H -0.214 1.214 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.158 0.842 39 H 0.151 0.849 40 H 0.150 0.850 41 H 0.097 0.903 42 H 0.117 0.883 43 H 0.118 0.882 44 H 0.097 0.903 45 H 0.105 0.895 46 H 0.096 0.904 47 H 0.093 0.907 48 H 0.067 0.933 49 H 0.219 0.781 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.661 16.764 4.909 18.695 hybrid contribution 0.947 -0.724 -0.440 1.270 sum -5.714 16.040 4.469 17.605 Atomic orbital electron populations 1.21856 0.96806 1.01078 1.01346 1.21417 0.94278 0.95662 1.03425 1.21752 0.97441 0.96180 0.96919 0.91576 1.21738 0.98783 0.81285 0.98519 1.48070 1.08845 1.06348 1.68889 1.18236 0.86083 0.84041 0.77263 1.90762 1.15292 1.86622 1.49788 1.19884 0.96775 0.94420 1.00178 1.21414 0.93623 0.96977 0.97867 1.20338 1.00395 0.91591 0.99115 1.21215 0.96632 0.96343 0.97707 1.20907 0.97135 0.95522 1.00438 1.20266 0.98866 0.90082 0.97309 1.21740 0.88614 0.86816 1.01119 1.89084 1.35922 1.60438 1.42523 1.21797 0.98496 0.90098 0.88224 1.22048 0.78872 1.00737 1.00170 1.22525 1.01843 0.99210 0.95484 1.20224 0.89702 0.90647 0.92637 0.93095 1.42466 1.19017 1.64033 1.10561 1.19171 0.93582 1.27124 0.97081 0.91318 1.24694 0.98522 1.01424 0.96028 1.69636 1.38132 1.48043 1.02253 0.86321 0.84356 0.79214 0.76577 1.21365 1.21809 1.21367 0.93123 0.92780 0.93383 0.91983 0.90445 0.90499 0.89503 0.84212 0.84906 0.85038 0.90338 0.88315 0.88213 0.90291 0.89494 0.90405 0.90705 0.93337 0.78106 0.93467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.67 37.16 0.36 -1.69 16 2 C -0.11 -1.72 5.19 -26.73 -0.14 -1.86 16 3 C -0.10 -1.64 2.14 -90.50 -0.19 -1.84 16 4 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 5 C 0.12 1.97 5.02 -3.72 -0.02 1.95 16 6 N -0.59 -9.47 2.97 -173.89 -0.52 -9.98 16 7 C 0.56 9.05 7.23 -12.33 -0.09 8.96 16 8 O -0.55 -10.39 16.47 5.32 0.09 -10.30 16 9 C -0.11 -1.49 5.00 -104.94 -0.53 -2.01 16 10 C -0.08 -0.96 7.36 -39.16 -0.29 -1.24 16 11 C -0.10 -0.97 10.03 -39.71 -0.40 -1.37 16 12 C -0.12 -1.21 6.33 -104.25 -0.66 -1.87 16 13 C -0.14 -1.50 6.31 -104.43 -0.66 -2.16 16 14 C -0.05 -0.56 9.74 -39.26 -0.38 -0.95 16 15 C 0.09 0.83 7.63 36.20 0.28 1.11 16 16 O -0.36 -3.70 11.72 -35.23 -0.41 -4.11 16 17 C 0.09 0.76 7.63 36.22 0.28 1.03 16 18 C 0.10 1.62 5.12 -3.71 -0.02 1.60 16 19 C -0.15 -2.43 5.78 -26.61 -0.15 -2.58 16 20 C 0.18 3.23 2.53 -67.89 -0.17 3.06 16 21 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 22 N -0.72 -16.04 3.72 -53.38 -0.20 -16.24 16 23 C -0.24 -6.08 9.93 -15.06 -0.15 -6.23 16 24 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 25 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 26 N -0.93 -26.56 13.06 55.49 0.72 -25.84 16 27 Si 0.90 21.44 29.55 -169.99 -5.02 16.42 16 28 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 29 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 30 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.73 6.70 -51.93 -0.35 0.38 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.08 1.41 7.69 -51.93 -0.40 1.01 16 36 H 0.08 1.42 6.64 -51.93 -0.34 1.07 16 37 H 0.09 1.45 5.74 -51.93 -0.30 1.15 16 38 H 0.14 1.62 7.07 -52.48 -0.37 1.25 16 39 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 40 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.09 1.57 7.74 -51.93 -0.40 1.16 16 46 H 0.08 1.06 4.55 -51.93 -0.24 0.82 16 47 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 48 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.38 9.21 5.94 -40.82 -0.24 8.96 16 50 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 390.78 15.07 5.89 5.89 Total: -1.00 -30.14 390.78 -10.16 -40.31 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -7.68 Total: 10.35 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -3.03 Total: -6.48 kcal Atomic # 7 Polarization: -52.07 SS G_CDS: 0.01 Total: -52.06 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: -0.33 Total: -14.41 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.14 -10.16 -40.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037933430.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.336 kcal (2) G-P(sol) polarization free energy of solvation -30.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds