Wall clock time and date at job start Wed Apr 1 2020 02:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47337 * 2 1 4 4 H 1.09003 * 109.49615 * 55.06900 * 3 2 1 5 5 C 1.53186 * 109.50063 * 295.00345 * 3 2 1 6 6 N 1.46920 * 108.77899 * 185.41347 * 5 3 2 7 7 C 1.34777 * 120.63270 * 233.63058 * 6 5 3 8 8 O 1.21553 * 119.99766 * 356.21489 * 7 6 5 9 9 C 1.47844 * 120.00352 * 176.21253 * 7 6 5 10 10 C 1.39601 * 120.12949 * 50.70213 * 9 7 6 11 11 C 1.37996 * 119.89191 * 179.76940 * 10 9 7 12 12 C 1.38136 * 120.10690 * 0.50145 * 11 10 9 13 13 C 1.38753 * 120.27835 * 359.75564 * 12 11 10 14 14 C 1.37710 * 120.18054 * 359.97438 * 13 12 11 15 15 C 1.51106 * 107.26135 * 179.97438 * 13 12 11 16 16 O 1.43932 * 105.95413 * 342.27708 * 15 13 12 17 17 C 1.43934 * 104.96872 * 28.52255 * 16 15 13 18 18 C 1.46927 * 118.73896 * 53.60563 * 6 5 3 19 19 C 1.53190 * 108.77494 * 306.39019 * 18 6 5 20 20 C 1.53040 * 109.49736 * 175.15936 * 3 2 1 21 21 H 1.08994 * 109.46244 * 301.34027 * 20 3 2 22 22 N 1.46499 * 109.45747 * 61.29856 * 20 3 2 23 23 C 1.36937 * 120.00099 * 204.99281 * 22 20 3 24 24 H 1.08000 * 120.00088 * 0.02562 * 23 22 20 25 25 C 1.38813 * 120.00233 * 179.97438 * 23 22 20 26 26 N 1.31621 * 119.99913 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 120.00100 * 180.02562 * 25 23 22 28 28 H 1.48495 * 109.47383 * 60.00311 * 27 25 23 29 29 H 1.48505 * 109.47006 * 180.02562 * 27 25 23 30 30 H 1.48503 * 109.47131 * 299.99848 * 27 25 23 31 31 H 1.08992 * 109.46960 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47048 * 59.99467 * 1 2 3 33 33 H 1.09003 * 109.46991 * 299.99715 * 1 2 3 34 34 H 1.09003 * 109.47500 * 119.99990 * 2 1 3 35 35 H 1.09003 * 109.46991 * 240.00285 * 2 1 3 36 36 H 1.09002 * 109.58621 * 305.20132 * 5 3 2 37 37 H 1.09001 * 109.58703 * 65.61780 * 5 3 2 38 38 H 1.08003 * 120.05372 * 0.02562 * 10 9 7 39 39 H 1.08000 * 119.94995 * 180.25333 * 11 10 9 40 40 H 1.07998 * 120.09656 * 180.02562 * 14 13 12 41 41 H 1.08998 * 110.15869 * 101.40208 * 15 13 12 42 42 H 1.08998 * 110.15322 * 223.16016 * 15 13 12 43 43 H 1.09006 * 110.14825 * 212.35213 * 17 16 15 44 44 H 1.08996 * 110.15657 * 90.59978 * 17 16 15 45 45 H 1.08991 * 109.58906 * 66.18242 * 18 6 5 46 46 H 1.08999 * 109.58399 * 186.60674 * 18 6 5 47 47 H 1.08998 * 109.49968 * 174.58231 * 19 18 6 48 48 H 1.08999 * 109.50308 * 294.65617 * 19 18 6 49 49 H 0.96999 * 120.00059 * 24.99975 * 22 20 3 50 50 H 0.97003 * 120.00379 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6066 1.9816 0.8424 5 6 1.6351 2.1281 -1.3087 6 7 2.2416 3.4656 -1.3492 7 6 1.4816 4.5581 -1.5627 8 8 0.2941 4.4369 -1.7922 9 6 2.0922 5.9038 -1.5176 10 6 3.2441 6.1757 -2.2579 11 6 3.8072 7.4349 -2.2160 12 6 3.2389 8.4224 -1.4350 13 6 2.0971 8.1569 -0.6927 14 6 1.5223 6.9061 -0.7303 15 6 1.7343 9.4267 0.0416 16 8 2.9163 10.2478 0.0198 17 6 3.6132 9.8644 -1.1798 18 6 3.6923 3.5898 -1.1522 19 6 4.0741 2.8880 0.1549 20 6 3.5656 1.4448 0.1217 21 1 3.8574 0.9358 1.0403 22 7 4.1480 0.7484 -1.0280 23 6 5.3861 0.1726 -0.9246 24 1 5.9331 0.2316 0.0048 25 6 5.9377 -0.4877 -2.0139 26 7 5.2709 -0.5600 -3.1463 27 14 7.6264 -1.2738 -1.8725 28 1 7.6053 -2.3029 -0.8022 29 1 7.9858 -1.9105 -3.1650 30 1 8.6308 -0.2322 -1.5381 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 0.5138 0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 1.9907 1.5398 -2.1546 37 1 0.5497 2.2174 -1.3537 38 1 3.6914 5.4031 -2.8657 39 1 4.6960 7.6475 -2.7915 40 1 0.6333 6.7010 -0.1523 41 1 0.9151 9.9342 -0.4677 42 1 1.4543 9.1989 1.0701 43 1 4.6898 9.9526 -1.0330 44 1 3.2950 10.4885 -2.0148 45 1 4.2157 3.1209 -1.9852 46 1 3.9642 4.6438 -1.0939 47 1 5.1585 2.8890 0.2650 48 1 3.6225 3.4141 0.9959 49 1 3.6566 0.6952 -1.8627 50 1 5.6565 -1.0212 -3.9077 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037933430.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:06 Heat of formation + Delta-G solvation = -49.651569 kcal Electronic energy + Delta-G solvation = -30985.817050 eV Core-core repulsion = 26977.554606 eV Total energy + Delta-G solvation = -4008.262444 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.05111 -41.15618 -39.37519 -38.08806 -35.94830 -35.36714 -33.43405 -32.72186 -32.60516 -31.03336 -29.96191 -28.99024 -27.08295 -25.85176 -25.33891 -24.98844 -23.33383 -22.74500 -22.12517 -20.98568 -19.81966 -19.26090 -18.39536 -17.60767 -17.55790 -17.20235 -16.91434 -16.57352 -16.20895 -15.98479 -15.65553 -15.54945 -15.28906 -15.03200 -14.80631 -14.64095 -14.37466 -14.27186 -14.11265 -14.01032 -13.58728 -13.56425 -13.30916 -13.08345 -12.88963 -12.80894 -12.75465 -12.66007 -12.36313 -12.20974 -12.14981 -11.96686 -11.84488 -11.60169 -11.46035 -11.18219 -11.12502 -10.99708 -10.77194 -10.03313 -9.71088 -9.56715 -8.91566 -7.87650 -5.13962 -0.21756 0.19401 1.50640 1.50884 1.51607 1.57372 1.88783 2.52405 2.60541 2.92858 3.07856 3.41890 3.46200 3.57884 3.77128 3.82797 3.85161 4.00700 4.06836 4.12489 4.24000 4.31290 4.33513 4.38928 4.42887 4.43990 4.45546 4.55038 4.58326 4.66264 4.72414 4.74309 4.81394 4.86658 4.88315 4.98142 5.02808 5.08893 5.16157 5.17962 5.20743 5.22553 5.23931 5.28288 5.39170 5.50087 5.59736 5.61684 5.64215 5.74919 6.33024 6.33840 6.97677 7.41648 8.17180 8.41355 9.35261 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012005 B = 0.003135 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.812062 B = 8928.742548 C =10457.277671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.105 4.105 3 C -0.092 4.092 4 H 0.084 0.916 5 C 0.124 3.876 6 N -0.591 5.591 7 C 0.557 3.443 8 O -0.579 6.579 9 C -0.130 4.130 10 C -0.088 4.088 11 C -0.091 4.091 12 C -0.117 4.117 13 C -0.144 4.144 14 C -0.053 4.053 15 C 0.093 3.907 16 O -0.377 6.377 17 C 0.089 3.911 18 C 0.114 3.886 19 C -0.142 4.142 20 C 0.173 3.827 21 H 0.048 0.952 22 N -0.723 5.723 23 C -0.228 4.228 24 H 0.075 0.925 25 C -0.071 4.071 26 N -0.968 5.968 27 Si 0.962 3.038 28 H -0.283 1.283 29 H -0.302 1.302 30 H -0.279 1.279 31 H 0.060 0.940 32 H 0.049 0.951 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.045 0.955 36 H 0.051 0.949 37 H 0.087 0.913 38 H 0.137 0.863 39 H 0.161 0.839 40 H 0.133 0.867 41 H 0.095 0.905 42 H 0.111 0.889 43 H 0.118 0.882 44 H 0.099 0.901 45 H 0.059 0.941 46 H 0.102 0.898 47 H 0.068 0.932 48 H 0.071 0.929 49 H 0.374 0.626 50 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.823 19.106 6.360 20.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.143 4.143 3 C -0.111 4.111 4 H 0.103 0.897 5 C 0.002 3.998 6 N -0.321 5.321 7 C 0.347 3.653 8 O -0.460 6.460 9 C -0.133 4.133 10 C -0.107 4.107 11 C -0.109 4.109 12 C -0.117 4.117 13 C -0.144 4.144 14 C -0.072 4.072 15 C 0.017 3.983 16 O -0.296 6.296 17 C 0.013 3.987 18 C -0.008 4.008 19 C -0.183 4.183 20 C 0.064 3.936 21 H 0.066 0.934 22 N -0.365 5.365 23 C -0.360 4.360 24 H 0.093 0.907 25 C -0.263 4.263 26 N -0.619 5.619 27 Si 0.793 3.207 28 H -0.210 1.210 29 H -0.229 1.229 30 H -0.205 1.205 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.105 0.895 38 H 0.155 0.845 39 H 0.178 0.822 40 H 0.151 0.849 41 H 0.113 0.887 42 H 0.129 0.871 43 H 0.136 0.864 44 H 0.116 0.884 45 H 0.077 0.923 46 H 0.120 0.880 47 H 0.087 0.913 48 H 0.090 0.910 49 H 0.207 0.793 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -6.199 19.120 6.483 21.119 hybrid contribution 0.765 -1.353 -0.865 1.778 sum -5.435 17.767 5.618 19.410 Atomic orbital electron populations 1.21790 0.94740 1.01981 1.01868 1.21339 0.96073 0.95044 1.01856 1.21660 0.95882 0.96541 0.97047 0.89743 1.21579 0.98666 0.81597 0.97964 1.48088 1.09001 1.06182 1.68810 1.18675 0.85652 0.84955 0.76065 1.90732 1.16790 1.87241 1.51254 1.19721 0.98067 0.93208 1.02338 1.21452 0.93345 0.98008 0.97871 1.20590 1.00886 0.90587 0.98843 1.21571 0.96068 0.97353 0.96724 1.21145 0.97206 0.95545 1.00504 1.20300 0.99079 0.90448 0.97382 1.21877 0.88711 0.85841 1.01864 1.89074 1.36460 1.60686 1.43384 1.21999 0.99481 0.88873 0.88343 1.21935 0.78310 1.01851 0.98729 1.22406 1.01486 0.97822 0.96586 1.20432 0.91011 0.91330 0.90807 0.93400 1.42563 1.18225 1.64298 1.11372 1.19522 0.94295 1.25370 0.96781 0.90745 1.25359 1.01715 1.03137 0.96088 1.69794 1.39561 1.49751 1.02822 0.85374 0.81043 0.78435 0.75853 1.20979 1.22925 1.20514 0.92107 0.93235 0.91795 0.91834 0.93625 0.93022 0.89516 0.84492 0.82170 0.84907 0.88741 0.87139 0.86447 0.88364 0.92292 0.87994 0.91338 0.91038 0.79288 0.94387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.79 9.67 71.98 0.70 -3.10 16 2 C -0.10 -3.30 5.19 30.59 0.16 -3.14 16 3 C -0.09 -2.89 2.14 -10.72 -0.02 -2.91 16 4 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 5 C 0.12 4.23 5.02 86.36 0.43 4.66 16 6 N -0.59 -19.05 2.97 -822.35 -2.44 -21.50 16 7 C 0.56 18.17 7.23 86.79 0.63 18.80 16 8 O -0.58 -22.36 16.47 -3.88 -0.06 -22.42 16 9 C -0.13 -3.45 5.00 -20.07 -0.10 -3.55 16 10 C -0.09 -1.99 7.36 22.54 0.17 -1.83 16 11 C -0.09 -1.61 10.03 22.19 0.22 -1.39 16 12 C -0.12 -2.04 6.33 -19.62 -0.12 -2.17 16 13 C -0.14 -2.77 6.31 -19.74 -0.12 -2.90 16 14 C -0.05 -1.23 9.74 22.48 0.22 -1.01 16 15 C 0.09 1.40 7.63 71.36 0.54 1.95 16 16 O -0.38 -6.58 11.72 -148.98 -1.75 -8.33 16 17 C 0.09 1.18 7.63 71.38 0.54 1.73 16 18 C 0.11 3.51 5.12 86.36 0.44 3.95 16 19 C -0.14 -4.47 5.78 30.67 0.18 -4.29 16 20 C 0.17 6.22 2.53 45.02 0.11 6.33 16 21 H 0.05 1.77 8.08 -2.39 -0.02 1.75 16 22 N -0.72 -32.97 3.72 -322.81 -1.20 -34.17 16 23 C -0.23 -11.69 9.93 84.03 0.83 -10.86 16 24 H 0.07 3.68 7.83 -2.91 -0.02 3.66 16 25 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 26 N -0.97 -56.88 13.06 21.65 0.28 -56.59 16 27 Si 0.96 44.58 29.55 68.60 2.03 46.61 16 28 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 29 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 30 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 31 H 0.06 1.44 8.14 -2.39 -0.02 1.43 16 32 H 0.05 1.32 6.70 -2.39 -0.02 1.31 16 33 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.04 1.72 7.69 -2.39 -0.02 1.71 16 36 H 0.05 2.02 6.64 -2.39 -0.02 2.00 16 37 H 0.09 2.96 5.74 -2.39 -0.01 2.94 16 38 H 0.14 3.11 7.07 -2.91 -0.02 3.09 16 39 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 40 H 0.13 2.93 8.06 -2.91 -0.02 2.91 16 41 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.12 1.17 8.14 -2.38 -0.02 1.15 16 44 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.06 2.18 7.74 -2.39 -0.02 2.16 16 46 H 0.10 2.67 4.55 -2.39 -0.01 2.66 16 47 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 48 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 49 H 0.37 18.68 5.94 -92.71 -0.55 18.13 16 50 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -65.81 390.78 2.53 -63.28 By element: Atomic # 1 Polarization: 35.83 SS G_CDS: 0.40 Total: 36.23 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: 5.27 Total: -3.10 kcal Atomic # 7 Polarization: -108.90 SS G_CDS: -3.36 Total: -112.26 kcal Atomic # 8 Polarization: -28.94 SS G_CDS: -1.81 Total: -30.75 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -65.81 2.53 -63.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037933430.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.624 kcal (2) G-P(sol) polarization free energy of solvation -65.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds