Wall clock time and date at job start Wed Apr 1 2020 02:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47159 * 2 1 4 4 H 1.09009 * 109.52363 * 305.07973 * 3 2 1 5 5 C 1.53194 * 109.49081 * 65.16602 * 3 2 1 6 6 N 1.46925 * 108.76585 * 174.59860 * 5 3 2 7 7 C 1.34782 * 120.62869 * 126.40680 * 6 5 3 8 8 O 1.21551 * 119.99859 * 354.14831 * 7 6 5 9 9 C 1.47840 * 119.99893 * 174.14280 * 7 6 5 10 10 C 1.39600 * 120.13752 * 318.68237 * 9 7 6 11 11 C 1.37995 * 119.89435 * 179.76901 * 10 9 7 12 12 C 1.38139 * 120.10874 * 0.49820 * 11 10 9 13 13 C 1.38751 * 120.27465 * 359.75494 * 12 11 10 14 14 C 1.37711 * 120.18540 * 359.97438 * 13 12 11 15 15 C 1.51108 * 107.25880 * 179.97438 * 13 12 11 16 16 O 1.43930 * 105.95611 * 342.28300 * 15 13 12 17 17 C 1.43927 * 104.96557 * 28.51366 * 16 15 13 18 18 C 1.46926 * 118.74234 * 306.38795 * 6 5 3 19 19 C 1.53196 * 108.77492 * 53.60619 * 18 6 5 20 20 C 1.53041 * 109.49683 * 185.00296 * 3 2 1 21 21 H 1.08996 * 109.45598 * 298.68537 * 20 3 2 22 22 N 1.46494 * 109.46412 * 58.65851 * 20 3 2 23 23 C 1.36939 * 120.00538 * 205.02685 * 22 20 3 24 24 H 1.07997 * 119.99434 * 0.02562 * 23 22 20 25 25 C 1.38810 * 120.00452 * 179.97438 * 23 22 20 26 26 N 1.31611 * 119.99955 * 179.97438 * 25 23 22 27 27 Si 1.86800 * 119.99651 * 0.02562 * 25 23 22 28 28 H 1.48493 * 109.47243 * 89.99884 * 27 25 23 29 29 H 1.48499 * 109.47400 * 329.99450 * 27 25 23 30 30 H 1.48504 * 109.46803 * 210.00027 * 27 25 23 31 31 H 1.09001 * 109.47266 * 299.99924 * 1 2 3 32 32 H 1.08996 * 109.47185 * 60.00670 * 1 2 3 33 33 H 1.08999 * 109.47405 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.47131 * 239.99559 * 2 1 3 35 35 H 1.09000 * 109.46874 * 120.00020 * 2 1 3 36 36 H 1.09006 * 109.59388 * 54.81277 * 5 3 2 37 37 H 1.09003 * 109.58505 * 294.38535 * 5 3 2 38 38 H 1.08001 * 120.04740 * 359.97438 * 10 9 7 39 39 H 1.07997 * 119.94654 * 180.24926 * 11 10 9 40 40 H 1.07996 * 120.09795 * 180.02562 * 14 13 12 41 41 H 1.09002 * 110.15364 * 101.40387 * 15 13 12 42 42 H 1.09004 * 110.15803 * 223.15986 * 15 13 12 43 43 H 1.09005 * 110.15223 * 212.34937 * 17 16 15 44 44 H 1.09003 * 110.21121 * 90.63590 * 17 16 15 45 45 H 1.09002 * 109.58303 * 293.82190 * 18 6 5 46 46 H 1.08992 * 109.58745 * 173.39497 * 18 6 5 47 47 H 1.09001 * 109.49367 * 185.41605 * 19 18 6 48 48 H 1.09001 * 109.52144 * 65.33265 * 19 18 6 49 49 H 0.97007 * 119.99996 * 25.02724 * 22 20 3 50 50 H 0.97007 * 120.00209 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6047 1.9827 -0.8408 5 6 1.6385 2.1265 1.3106 6 7 2.2449 3.4642 1.3506 7 6 1.4854 4.5562 1.5680 8 8 0.2757 4.4531 1.6272 9 6 2.1236 5.8793 1.7346 10 6 3.2911 6.0042 2.4897 11 6 3.8852 7.2409 2.6380 12 6 3.3210 8.3558 2.0491 13 6 2.1579 8.2391 1.3017 14 6 1.5582 7.0099 1.1415 15 6 1.8054 9.6210 0.8022 16 8 2.5453 10.5403 1.6263 17 6 3.7195 9.8136 2.0318 18 6 3.6950 3.5889 1.1495 19 6 4.0734 2.8882 -0.1591 20 6 3.5652 1.4449 -0.1258 21 1 4.0008 0.9262 0.7281 22 7 3.9542 0.7619 -1.3620 23 6 5.1921 0.1857 -1.4657 24 1 5.8815 0.2344 -0.6358 25 6 5.5604 -0.4620 -2.6369 26 7 6.7504 -1.0153 -2.7365 27 14 4.3676 -0.5469 -4.0719 28 1 4.5689 0.6311 -4.9533 29 1 2.9743 -0.5484 -3.5582 30 1 4.6113 -1.7911 -4.8451 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 1.9967 1.5375 2.1550 37 1 0.5532 2.2156 1.3588 38 1 3.7303 5.1339 2.9544 39 1 4.7906 7.3378 3.2187 40 1 0.6531 6.9206 0.5591 41 1 2.1015 9.7301 -0.2412 42 1 0.7352 9.7978 0.9099 43 1 4.0315 10.1294 3.0274 44 1 4.5270 9.9737 1.3173 45 1 4.2208 3.1192 1.9808 46 1 3.9665 4.6429 1.0914 47 1 5.1575 2.8896 -0.2723 48 1 3.6192 3.4145 -0.9987 49 1 3.3348 0.7178 -2.1073 50 1 7.0077 -1.4683 -3.5549 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037933432.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:12 Heat of formation + Delta-G solvation = -30.433032 kcal Electronic energy + Delta-G solvation = -30585.297834 eV Core-core repulsion = 26577.868769 eV Total energy + Delta-G solvation = -4007.429066 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.23812 -40.17923 -38.16631 -37.25273 -34.96386 -33.95109 -31.99926 -31.96608 -31.74150 -29.96430 -29.00336 -28.32540 -26.02888 -24.82502 -23.93714 -23.07487 -22.08215 -21.94686 -20.88162 -20.13609 -19.38972 -17.72879 -17.36919 -16.89689 -16.77030 -16.32042 -15.98598 -15.41090 -14.97519 -14.84008 -14.54232 -14.39476 -14.05233 -13.82825 -13.78170 -13.42131 -13.38942 -13.22886 -13.00661 -12.93812 -12.79464 -12.52614 -12.43517 -12.14431 -11.88200 -11.79049 -11.45284 -11.34876 -11.06794 -11.05009 -10.83373 -10.47711 -10.46180 -10.36557 -10.24718 -9.94358 -9.79257 -9.62263 -9.30074 -9.00737 -8.88433 -8.60292 -7.32001 -5.82479 -3.17982 0.52226 0.91939 2.53194 2.87475 3.33150 3.35879 3.36684 3.42031 3.51208 3.78495 4.19051 4.32841 4.52116 4.54204 4.78766 4.87026 4.93935 4.96411 4.98928 5.01645 5.10038 5.13176 5.17982 5.29152 5.30803 5.37721 5.42714 5.47977 5.52537 5.56209 5.58552 5.72385 5.83158 5.86668 5.87509 5.93881 5.97032 5.99576 6.05224 6.19820 6.23496 6.25405 6.30061 6.39155 6.44822 6.51170 6.66903 6.75318 6.89671 7.34441 7.92915 8.04918 8.36642 9.14804 9.87696 10.07524 11.35774 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013254 B = 0.002802 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.068175 B = 9990.014370 C =11060.959810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.108 4.108 4 H 0.069 0.931 5 C 0.120 3.880 6 N -0.599 5.599 7 C 0.559 3.441 8 O -0.541 6.541 9 C -0.117 4.117 10 C -0.081 4.081 11 C -0.099 4.099 12 C -0.114 4.114 13 C -0.140 4.140 14 C -0.041 4.041 15 C 0.092 3.908 16 O -0.361 6.361 17 C 0.089 3.911 18 C 0.097 3.903 19 C -0.152 4.152 20 C 0.188 3.812 21 H 0.057 0.943 22 N -0.745 5.745 23 C -0.242 4.242 24 H 0.090 0.910 25 C 0.006 3.994 26 N -0.933 5.933 27 Si 0.881 3.119 28 H -0.285 1.285 29 H -0.276 1.276 30 H -0.291 1.291 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.051 0.949 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.093 0.907 38 H 0.140 0.860 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.080 0.920 42 H 0.100 0.900 43 H 0.100 0.900 44 H 0.082 0.918 45 H 0.071 0.929 46 H 0.086 0.914 47 H 0.082 0.918 48 H 0.058 0.942 49 H 0.361 0.639 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.464 17.755 11.373 22.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.128 4.128 4 H 0.088 0.912 5 C -0.003 4.003 6 N -0.330 5.330 7 C 0.348 3.652 8 O -0.419 6.419 9 C -0.120 4.120 10 C -0.099 4.099 11 C -0.117 4.117 12 C -0.114 4.114 13 C -0.140 4.140 14 C -0.060 4.060 15 C 0.016 3.984 16 O -0.279 6.279 17 C 0.013 3.987 18 C -0.025 4.025 19 C -0.193 4.193 20 C 0.079 3.921 21 H 0.075 0.925 22 N -0.386 5.386 23 C -0.372 4.372 24 H 0.108 0.892 25 C -0.190 4.190 26 N -0.581 5.581 27 Si 0.712 3.288 28 H -0.212 1.212 29 H -0.203 1.203 30 H -0.218 1.218 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.111 0.889 38 H 0.157 0.843 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.098 0.902 42 H 0.118 0.882 43 H 0.118 0.882 44 H 0.099 0.901 45 H 0.089 0.911 46 H 0.104 0.896 47 H 0.100 0.900 48 H 0.077 0.923 49 H 0.194 0.806 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.912 17.792 11.491 22.978 hybrid contribution -0.491 -0.423 -1.300 1.452 sum -9.403 17.369 10.191 22.225 Atomic orbital electron populations 1.21853 0.96612 1.01194 1.01451 1.21464 0.94565 0.95628 1.03472 1.21831 0.97642 0.96329 0.97028 0.91231 1.21779 0.99596 0.81091 0.97793 1.48076 1.08769 1.06550 1.69650 1.18244 0.86463 0.83784 0.76748 1.90770 1.13633 1.85967 1.51530 1.19859 0.96801 0.93678 1.01648 1.21425 0.93526 0.97911 0.97045 1.20338 1.00550 0.90716 1.00080 1.21260 0.95982 0.96355 0.97833 1.20945 0.97213 0.95758 1.00073 1.20339 0.98702 0.89446 0.97538 1.21766 0.97991 0.83848 0.94799 1.89089 1.34743 1.35440 1.68634 1.21813 0.88937 0.86255 1.01733 1.22205 0.79173 1.01879 0.99289 1.22655 1.02672 0.98729 0.95201 1.20162 0.90658 0.90640 0.90678 0.92491 1.42773 1.16487 1.66286 1.13101 1.19037 0.90400 1.27348 1.00438 0.89205 1.24649 0.96404 1.00230 0.97679 1.69691 1.19298 1.41532 1.27561 0.86601 0.81170 0.77334 0.83705 1.21189 1.20258 1.21784 0.92942 0.93078 0.93024 0.90392 0.91914 0.91202 0.88919 0.84275 0.84840 0.84808 0.90173 0.88224 0.88204 0.90067 0.91067 0.89577 0.89966 0.92279 0.80605 0.93046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.67 37.16 0.36 -1.59 16 2 C -0.11 -1.68 5.31 -26.73 -0.14 -1.82 16 3 C -0.11 -1.63 1.92 -90.50 -0.17 -1.80 16 4 H 0.07 1.12 8.14 -51.92 -0.42 0.70 16 5 C 0.12 1.60 5.34 -3.71 -0.02 1.58 16 6 N -0.60 -7.86 2.97 -173.88 -0.52 -8.38 16 7 C 0.56 7.87 7.31 -12.33 -0.09 7.78 16 8 O -0.54 -9.22 16.36 5.32 0.09 -9.13 16 9 C -0.12 -1.37 5.09 -104.94 -0.53 -1.91 16 10 C -0.08 -0.77 7.40 -39.16 -0.29 -1.06 16 11 C -0.10 -0.82 10.03 -39.71 -0.40 -1.22 16 12 C -0.11 -1.02 6.33 -104.26 -0.66 -1.68 16 13 C -0.14 -1.37 6.31 -104.43 -0.66 -2.03 16 14 C -0.04 -0.46 9.65 -39.25 -0.38 -0.84 16 15 C 0.09 0.76 7.63 36.21 0.28 1.04 16 16 O -0.36 -3.43 11.72 -35.23 -0.41 -3.85 16 17 C 0.09 0.67 7.63 36.22 0.28 0.94 16 18 C 0.10 1.17 4.92 -3.71 -0.02 1.15 16 19 C -0.15 -2.34 5.66 -26.61 -0.15 -2.50 16 20 C 0.19 3.28 2.19 -67.89 -0.15 3.13 16 21 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 22 N -0.74 -16.35 4.13 -53.39 -0.22 -16.57 16 23 C -0.24 -6.43 10.41 -15.06 -0.16 -6.58 16 24 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 25 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 26 N -0.93 -28.47 13.97 55.49 0.78 -27.70 16 27 Si 0.88 21.57 27.74 -169.99 -4.71 16.85 16 28 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 29 H -0.28 -6.35 6.52 56.52 0.37 -5.98 16 30 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 31 H 0.05 0.62 6.70 -51.93 -0.35 0.27 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.08 1.36 7.22 -51.93 -0.37 0.98 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.09 1.30 5.72 -51.93 -0.30 1.00 16 38 H 0.14 1.12 6.70 -52.49 -0.35 0.77 16 39 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 40 H 0.13 1.44 8.06 -52.49 -0.42 1.01 16 41 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.07 0.76 8.13 -51.93 -0.42 0.34 16 46 H 0.09 0.92 4.80 -51.93 -0.25 0.67 16 47 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 48 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 49 H 0.36 8.01 5.37 -40.82 -0.22 7.79 16 50 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 390.67 15.07 5.89 5.89 Total: -1.00 -32.46 390.67 -9.89 -42.34 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -7.77 Total: 7.86 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: -3.00 Total: -7.32 kcal Atomic # 7 Polarization: -52.68 SS G_CDS: 0.04 Total: -52.64 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: -0.33 Total: -12.98 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.71 Total: 16.85 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.46 -9.89 -42.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037933432.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.912 kcal (2) G-P(sol) polarization free energy of solvation -32.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds