Wall clock time and date at job start Wed Apr 1 2020 02:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47159 * 2 1 4 4 H 1.09009 * 109.52363 * 305.07973 * 3 2 1 5 5 C 1.53194 * 109.49081 * 65.16602 * 3 2 1 6 6 N 1.46925 * 108.76585 * 174.59860 * 5 3 2 7 7 C 1.34782 * 120.62869 * 126.40680 * 6 5 3 8 8 O 1.21551 * 119.99859 * 354.14831 * 7 6 5 9 9 C 1.47840 * 119.99893 * 174.14280 * 7 6 5 10 10 C 1.39600 * 120.13752 * 318.68237 * 9 7 6 11 11 C 1.37995 * 119.89435 * 179.76901 * 10 9 7 12 12 C 1.38139 * 120.10874 * 0.49820 * 11 10 9 13 13 C 1.38751 * 120.27465 * 359.75494 * 12 11 10 14 14 C 1.37711 * 120.18540 * 359.97438 * 13 12 11 15 15 C 1.51108 * 107.25880 * 179.97438 * 13 12 11 16 16 O 1.43930 * 105.95611 * 342.28300 * 15 13 12 17 17 C 1.43927 * 104.96557 * 28.51366 * 16 15 13 18 18 C 1.46926 * 118.74234 * 306.38795 * 6 5 3 19 19 C 1.53196 * 108.77492 * 53.60619 * 18 6 5 20 20 C 1.53041 * 109.49683 * 185.00296 * 3 2 1 21 21 H 1.08996 * 109.45598 * 298.68537 * 20 3 2 22 22 N 1.46494 * 109.46412 * 58.65851 * 20 3 2 23 23 C 1.36939 * 120.00538 * 205.02685 * 22 20 3 24 24 H 1.07997 * 119.99434 * 0.02562 * 23 22 20 25 25 C 1.38810 * 120.00452 * 179.97438 * 23 22 20 26 26 N 1.31611 * 119.99955 * 179.97438 * 25 23 22 27 27 Si 1.86800 * 119.99651 * 0.02562 * 25 23 22 28 28 H 1.48493 * 109.47243 * 89.99884 * 27 25 23 29 29 H 1.48499 * 109.47400 * 329.99450 * 27 25 23 30 30 H 1.48504 * 109.46803 * 210.00027 * 27 25 23 31 31 H 1.09001 * 109.47266 * 299.99924 * 1 2 3 32 32 H 1.08996 * 109.47185 * 60.00670 * 1 2 3 33 33 H 1.08999 * 109.47405 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.47131 * 239.99559 * 2 1 3 35 35 H 1.09000 * 109.46874 * 120.00020 * 2 1 3 36 36 H 1.09006 * 109.59388 * 54.81277 * 5 3 2 37 37 H 1.09003 * 109.58505 * 294.38535 * 5 3 2 38 38 H 1.08001 * 120.04740 * 359.97438 * 10 9 7 39 39 H 1.07997 * 119.94654 * 180.24926 * 11 10 9 40 40 H 1.07996 * 120.09795 * 180.02562 * 14 13 12 41 41 H 1.09002 * 110.15364 * 101.40387 * 15 13 12 42 42 H 1.09004 * 110.15803 * 223.15986 * 15 13 12 43 43 H 1.09005 * 110.15223 * 212.34937 * 17 16 15 44 44 H 1.09003 * 110.21121 * 90.63590 * 17 16 15 45 45 H 1.09002 * 109.58303 * 293.82190 * 18 6 5 46 46 H 1.08992 * 109.58745 * 173.39497 * 18 6 5 47 47 H 1.09001 * 109.49367 * 185.41605 * 19 18 6 48 48 H 1.09001 * 109.52144 * 65.33265 * 19 18 6 49 49 H 0.97007 * 119.99996 * 25.02724 * 22 20 3 50 50 H 0.97007 * 120.00209 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6047 1.9827 -0.8408 5 6 1.6385 2.1265 1.3106 6 7 2.2449 3.4642 1.3506 7 6 1.4854 4.5562 1.5680 8 8 0.2757 4.4531 1.6272 9 6 2.1236 5.8793 1.7346 10 6 3.2911 6.0042 2.4897 11 6 3.8852 7.2409 2.6380 12 6 3.3210 8.3558 2.0491 13 6 2.1579 8.2391 1.3017 14 6 1.5582 7.0099 1.1415 15 6 1.8054 9.6210 0.8022 16 8 2.5453 10.5403 1.6263 17 6 3.7195 9.8136 2.0318 18 6 3.6950 3.5889 1.1495 19 6 4.0734 2.8882 -0.1591 20 6 3.5652 1.4449 -0.1258 21 1 4.0008 0.9262 0.7281 22 7 3.9542 0.7619 -1.3620 23 6 5.1921 0.1857 -1.4657 24 1 5.8815 0.2344 -0.6358 25 6 5.5604 -0.4620 -2.6369 26 7 6.7504 -1.0153 -2.7365 27 14 4.3676 -0.5469 -4.0719 28 1 4.5689 0.6311 -4.9533 29 1 2.9743 -0.5484 -3.5582 30 1 4.6113 -1.7911 -4.8451 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 1.9967 1.5375 2.1550 37 1 0.5532 2.2156 1.3588 38 1 3.7303 5.1339 2.9544 39 1 4.7906 7.3378 3.2187 40 1 0.6531 6.9206 0.5591 41 1 2.1015 9.7301 -0.2412 42 1 0.7352 9.7978 0.9099 43 1 4.0315 10.1294 3.0274 44 1 4.5270 9.9737 1.3173 45 1 4.2208 3.1192 1.9808 46 1 3.9665 4.6429 1.0914 47 1 5.1575 2.8896 -0.2723 48 1 3.6192 3.4145 -0.9987 49 1 3.3348 0.7178 -2.1073 50 1 7.0077 -1.4683 -3.5549 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037933432.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:11 Heat of formation + Delta-G solvation = -50.101167 kcal Electronic energy + Delta-G solvation = -30586.150709 eV Core-core repulsion = 26577.868769 eV Total energy + Delta-G solvation = -4008.281940 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.04931 -41.13739 -39.34969 -38.09329 -36.35498 -35.39158 -33.63416 -32.72549 -32.63095 -31.52668 -30.12489 -28.99804 -27.17357 -25.94070 -25.03060 -24.47082 -23.04113 -22.74578 -22.18328 -21.37690 -20.54079 -19.49237 -18.42356 -17.59286 -17.54454 -17.28406 -16.81847 -16.75572 -16.28056 -15.99638 -15.79191 -15.32006 -15.21867 -15.04179 -14.73071 -14.64406 -14.56078 -14.37789 -14.11114 -13.99192 -13.87168 -13.57046 -13.44899 -13.18743 -13.09692 -12.93382 -12.82479 -12.60098 -12.47415 -12.19028 -12.07226 -12.00811 -11.85817 -11.65375 -11.57540 -11.17869 -11.14354 -11.06455 -10.83344 -10.03433 -9.76662 -9.59876 -9.25579 -8.00043 -5.31516 -0.25238 0.20499 1.37614 1.38284 1.45737 1.53778 1.87591 2.48778 2.56405 2.91406 3.07642 3.31859 3.41241 3.53510 3.57877 3.71073 3.83689 3.93683 3.99016 4.10937 4.21019 4.27352 4.30511 4.36780 4.40696 4.42285 4.44288 4.54356 4.59472 4.66094 4.71865 4.72414 4.75427 4.78091 4.84985 4.89067 4.96912 5.00765 5.08893 5.14906 5.17867 5.22799 5.25670 5.31963 5.43093 5.47322 5.59647 5.62658 5.75270 5.80776 6.24259 6.28357 6.98303 7.10209 7.87291 8.05193 9.21465 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013254 B = 0.002802 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.068175 B = 9990.014370 C =11060.959810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.111 4.111 3 C -0.097 4.097 4 H 0.058 0.942 5 C 0.124 3.876 6 N -0.597 5.597 7 C 0.560 3.440 8 O -0.577 6.577 9 C -0.138 4.138 10 C -0.080 4.080 11 C -0.094 4.094 12 C -0.115 4.115 13 C -0.150 4.150 14 C -0.056 4.056 15 C 0.091 3.909 16 O -0.378 6.378 17 C 0.086 3.914 18 C 0.107 3.893 19 C -0.144 4.144 20 C 0.183 3.817 21 H 0.053 0.947 22 N -0.748 5.748 23 C -0.215 4.215 24 H 0.064 0.936 25 C -0.061 4.061 26 N -0.983 5.983 27 Si 0.943 3.057 28 H -0.284 1.284 29 H -0.255 1.255 30 H -0.300 1.300 31 H 0.063 0.937 32 H 0.047 0.953 33 H 0.061 0.939 34 H 0.050 0.950 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.156 0.844 39 H 0.166 0.834 40 H 0.126 0.874 41 H 0.092 0.908 42 H 0.107 0.893 43 H 0.119 0.881 44 H 0.097 0.903 45 H 0.094 0.906 46 H 0.105 0.895 47 H 0.068 0.932 48 H 0.048 0.952 49 H 0.361 0.639 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.016 19.486 12.738 24.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.150 4.150 3 C -0.117 4.117 4 H 0.077 0.923 5 C 0.002 3.998 6 N -0.328 5.328 7 C 0.350 3.650 8 O -0.458 6.458 9 C -0.141 4.141 10 C -0.098 4.098 11 C -0.111 4.111 12 C -0.115 4.115 13 C -0.150 4.150 14 C -0.075 4.075 15 C 0.015 3.985 16 O -0.297 6.297 17 C 0.011 3.989 18 C -0.016 4.016 19 C -0.185 4.185 20 C 0.075 3.925 21 H 0.071 0.929 22 N -0.390 5.390 23 C -0.346 4.346 24 H 0.082 0.918 25 C -0.253 4.253 26 N -0.635 5.635 27 Si 0.772 3.228 28 H -0.211 1.211 29 H -0.179 1.179 30 H -0.227 1.227 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.174 0.826 39 H 0.183 0.817 40 H 0.144 0.856 41 H 0.110 0.890 42 H 0.125 0.875 43 H 0.137 0.863 44 H 0.115 0.885 45 H 0.112 0.888 46 H 0.123 0.877 47 H 0.086 0.914 48 H 0.067 0.933 49 H 0.194 0.806 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.497 19.560 12.890 25.277 hybrid contribution -0.291 -0.878 -1.618 1.864 sum -9.787 18.682 11.272 23.914 Atomic orbital electron populations 1.21797 0.94792 1.02045 1.01860 1.21417 0.96162 0.95011 1.02362 1.21690 0.95472 0.96761 0.97762 0.92346 1.21722 0.99560 0.81385 0.97166 1.48105 1.09114 1.06334 1.69256 1.18608 0.86040 0.84593 0.75809 1.90743 1.15248 1.86552 1.53283 1.19772 0.98189 0.92481 1.03627 1.21627 0.92630 0.99192 0.96367 1.20683 1.01193 0.89792 0.99452 1.21608 0.95473 0.97459 0.96998 1.21117 0.97674 0.95821 1.00377 1.20352 0.98866 0.90081 0.98153 1.21864 0.98498 0.82926 0.95223 1.89070 1.35603 1.36111 1.68955 1.22023 0.88617 0.85025 1.03281 1.22220 0.78630 1.02834 0.97880 1.22470 1.01516 0.97418 0.97079 1.20405 0.92458 0.91204 0.88478 0.92853 1.42805 1.14892 1.66499 1.14760 1.19007 0.91232 1.25372 0.99022 0.91781 1.25342 0.98078 1.01209 1.00634 1.69853 1.21593 1.43780 1.28235 0.85580 0.80204 0.76666 0.80342 1.21091 1.17939 1.22684 0.91771 0.93425 0.91986 0.93154 0.91314 0.89429 0.89231 0.82648 0.81657 0.85581 0.89027 0.87489 0.86276 0.88506 0.88789 0.87676 0.91370 0.93295 0.80587 0.93570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 9.67 71.98 0.70 -2.81 16 2 C -0.11 -3.17 5.31 30.59 0.16 -3.01 16 3 C -0.10 -2.80 1.92 -10.72 -0.02 -2.82 16 4 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 5 C 0.12 3.10 5.34 86.36 0.46 3.56 16 6 N -0.60 -14.63 2.97 -822.30 -2.44 -17.07 16 7 C 0.56 15.13 7.31 86.78 0.63 15.77 16 8 O -0.58 -19.51 16.36 -3.88 -0.06 -19.58 16 9 C -0.14 -3.04 5.09 -20.07 -0.10 -3.15 16 10 C -0.08 -1.29 7.40 22.54 0.17 -1.12 16 11 C -0.09 -1.22 10.03 22.19 0.22 -1.00 16 12 C -0.11 -1.75 6.33 -19.63 -0.12 -1.87 16 13 C -0.15 -2.71 6.31 -19.74 -0.12 -2.84 16 14 C -0.06 -1.20 9.65 22.48 0.22 -0.98 16 15 C 0.09 1.37 7.63 71.37 0.54 1.91 16 16 O -0.38 -6.44 11.72 -148.98 -1.75 -8.18 16 17 C 0.09 1.04 7.63 71.37 0.54 1.58 16 18 C 0.11 2.31 4.92 86.36 0.42 2.73 16 19 C -0.14 -4.30 5.66 30.67 0.17 -4.13 16 20 C 0.18 6.21 2.19 45.02 0.10 6.30 16 21 H 0.05 1.87 8.08 -2.39 -0.02 1.86 16 22 N -0.75 -32.63 4.13 -322.82 -1.33 -33.96 16 23 C -0.22 -11.55 10.41 84.03 0.87 -10.68 16 24 H 0.06 3.73 8.06 -2.91 -0.02 3.70 16 25 C -0.06 -3.51 5.50 84.86 0.47 -3.04 16 26 N -0.98 -61.62 13.97 21.65 0.30 -61.32 16 27 Si 0.94 45.03 27.74 68.60 1.90 46.93 16 28 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 29 H -0.25 -11.06 6.52 99.48 0.65 -10.41 16 30 H -0.30 -14.65 7.11 99.48 0.71 -13.95 16 31 H 0.06 1.38 6.70 -2.39 -0.02 1.36 16 32 H 0.05 1.15 8.14 -2.39 -0.02 1.14 16 33 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.05 1.72 7.22 -2.39 -0.02 1.70 16 35 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 37 H 0.09 2.37 5.72 -2.39 -0.01 2.36 16 38 H 0.16 1.94 6.70 -2.91 -0.02 1.92 16 39 H 0.17 1.09 8.06 -2.91 -0.02 1.07 16 40 H 0.13 2.77 8.06 -2.91 -0.02 2.75 16 41 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.12 0.97 8.14 -2.38 -0.02 0.95 16 44 H 0.10 0.88 8.14 -2.39 -0.02 0.87 16 45 H 0.09 1.68 8.13 -2.39 -0.02 1.66 16 46 H 0.11 1.95 4.80 -2.39 -0.01 1.94 16 47 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 48 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 49 H 0.36 15.76 5.37 -92.70 -0.50 15.26 16 50 H 0.26 15.40 8.31 -92.70 -0.77 14.63 16 Total: -1.00 -71.87 390.67 2.33 -69.54 By element: Atomic # 1 Polarization: 28.82 SS G_CDS: 0.39 Total: 29.21 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: 5.32 Total: -5.57 kcal Atomic # 7 Polarization: -108.87 SS G_CDS: -3.48 Total: -112.35 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: -1.81 Total: -27.76 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 1.90 Total: 46.93 kcal Total: -71.87 2.33 -69.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037933432.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.440 kcal (2) G-P(sol) polarization free energy of solvation -71.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds