Wall clock time and date at job start Wed Apr 1 2020 02:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47239 * 2 1 4 4 H 1.09003 * 109.52065 * 304.91587 * 3 2 1 5 5 C 1.53187 * 109.50147 * 64.99601 * 3 2 1 6 6 N 1.46928 * 108.89490 * 174.65843 * 5 3 2 7 7 C 1.34776 * 120.62926 * 126.30155 * 6 5 3 8 8 O 1.21590 * 120.00211 * 354.43704 * 7 6 5 9 9 C 1.47535 * 119.99856 * 174.43559 * 7 6 5 10 10 C 1.39524 * 120.05521 * 311.83053 * 9 7 6 11 11 C 1.37786 * 120.18194 * 179.97438 * 10 9 7 12 12 C 1.38646 * 119.98105 * 359.83329 * 11 10 9 13 13 C 1.37655 * 120.31702 * 359.97438 * 12 11 10 14 14 C 1.38878 * 120.87102 * 0.10136 * 13 12 11 15 15 O 1.35861 * 111.30031 * 179.29097 * 14 13 12 16 16 C 1.43781 * 109.22974 * 19.58838 * 15 14 13 17 17 C 1.51678 * 132.14067 * 180.91760 * 13 12 11 18 18 C 1.46924 * 118.73887 * 306.32229 * 6 5 3 19 19 C 1.53193 * 108.77465 * 53.61154 * 18 6 5 20 20 C 1.53045 * 109.31110 * 305.36124 * 19 18 6 21 21 H 1.09001 * 109.45899 * 181.37156 * 20 19 18 22 22 N 1.46496 * 109.45896 * 301.34470 * 20 19 18 23 23 C 1.36934 * 120.00442 * 274.99747 * 22 20 19 24 24 H 1.08000 * 119.99368 * 0.02562 * 23 22 20 25 25 C 1.38812 * 120.00300 * 180.02562 * 23 22 20 26 26 N 1.31624 * 119.99751 * 180.02562 * 25 23 22 27 27 Si 1.86799 * 119.99885 * 0.02562 * 25 23 22 28 28 H 1.48504 * 109.46889 * 90.00306 * 27 25 23 29 29 H 1.48497 * 109.46820 * 209.99759 * 27 25 23 30 30 H 1.48495 * 109.47435 * 330.00219 * 27 25 23 31 31 H 1.08995 * 109.47291 * 59.99953 * 1 2 3 32 32 H 1.08994 * 109.47191 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.46727 * 300.00059 * 1 2 3 34 34 H 1.08991 * 109.47177 * 239.99937 * 2 1 3 35 35 H 1.09005 * 109.47292 * 119.99225 * 2 1 3 36 36 H 1.09004 * 109.58167 * 54.80046 * 5 3 2 37 37 H 1.08998 * 109.59218 * 294.52351 * 5 3 2 38 38 H 1.07998 * 119.90998 * 359.97438 * 10 9 7 39 39 H 1.07999 * 120.00935 * 179.85398 * 11 10 9 40 40 H 1.08003 * 119.84015 * 179.97438 * 12 11 10 41 41 H 1.08996 * 110.75513 * 90.43357 * 16 15 14 42 42 H 1.09005 * 110.75488 * 213.61332 * 16 15 14 43 43 H 1.08997 * 110.93697 * 282.55553 * 17 13 12 44 44 H 1.09000 * 110.93799 * 46.24015 * 17 13 12 45 45 H 1.09006 * 109.58362 * 173.39282 * 18 6 5 46 46 H 1.08998 * 109.59200 * 293.82348 * 18 6 5 47 47 H 1.08998 * 109.49869 * 65.31157 * 19 18 6 48 48 H 1.09000 * 109.49544 * 185.37967 * 19 18 6 49 49 H 0.97003 * 119.99883 * 95.00208 * 22 20 19 50 50 H 0.97001 * 119.99324 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6070 1.9819 -0.8424 5 6 1.6350 2.1281 1.3087 6 7 2.2389 3.4669 1.3511 7 6 1.4764 4.5576 1.5644 8 8 0.2666 4.4517 1.6231 9 6 2.1099 5.8801 1.7268 10 6 3.1905 6.0354 2.5956 11 6 3.7844 7.2692 2.7488 12 6 3.3102 8.3597 2.0358 13 6 2.2472 8.2169 1.1731 14 6 1.6295 6.9849 1.0012 15 8 0.5978 7.0687 0.1211 16 6 0.7545 8.2515 -0.6812 17 6 1.5350 9.2003 0.2641 18 6 3.6895 3.5941 1.1561 19 6 4.0746 2.8940 -0.1510 20 6 3.5688 1.4499 -0.1197 21 1 3.8626 0.9422 -1.0384 22 7 4.1511 0.7537 1.0303 23 6 5.3898 0.1791 0.9276 24 1 5.9377 0.2396 -0.0012 25 6 5.9413 -0.4810 2.0171 26 7 7.1322 -1.0328 1.9184 27 14 4.9932 -0.5861 3.6232 28 1 4.1525 -1.8102 3.6225 29 1 5.9483 -0.6423 4.7589 30 1 4.1253 0.6104 3.7650 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5137 0.8901 36 1 1.9907 1.5398 2.1546 37 1 0.5495 2.2152 1.3550 38 1 3.5625 5.1862 3.1495 39 1 4.6192 7.3868 3.4238 40 1 3.7772 9.3259 2.1580 41 1 1.3282 8.0339 -1.5820 42 1 -0.2163 8.6765 -0.9365 43 1 0.8606 9.8394 0.8340 44 1 2.2508 9.7974 -0.3008 45 1 3.9595 4.6486 1.0990 46 1 4.2128 3.1254 1.9895 47 1 3.6225 3.4196 -0.9921 48 1 5.1591 2.8979 -0.2600 49 1 3.6591 0.6997 1.8645 50 1 7.5176 -1.4937 2.6799 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037935411.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:32 Heat of formation + Delta-G solvation = -23.176334 kcal Electronic energy + Delta-G solvation = -31608.652471 eV Core-core repulsion = 27601.538079 eV Total energy + Delta-G solvation = -4007.114392 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.46572 -40.01662 -37.99941 -37.32765 -34.52452 -33.86201 -32.91818 -31.74816 -30.55795 -29.84061 -29.60073 -28.55917 -25.61629 -23.95604 -23.90860 -23.16444 -22.68574 -22.12108 -20.81985 -19.79767 -18.43983 -17.89562 -17.59481 -16.97481 -16.75343 -16.44800 -15.77085 -15.33232 -15.07361 -14.59800 -14.43079 -14.12331 -13.89969 -13.65748 -13.50474 -13.41237 -13.32429 -13.18415 -12.98063 -12.76185 -12.49239 -12.44772 -12.06584 -11.99850 -11.87982 -11.60273 -11.46783 -11.25160 -11.18811 -11.01911 -10.90486 -10.77698 -10.35929 -10.34753 -10.20959 -9.78528 -9.67817 -9.55441 -9.06271 -8.92354 -8.41624 -8.27464 -7.28516 -5.79798 -3.14761 0.80770 1.09389 2.79656 2.99184 3.15705 3.32836 3.36473 3.42913 3.54531 4.08622 4.24340 4.47675 4.55537 4.66936 4.73920 4.91257 5.00257 5.08660 5.12768 5.13505 5.17464 5.26330 5.35557 5.37776 5.40559 5.46707 5.53755 5.59735 5.63658 5.68447 5.70789 5.80454 5.92065 5.99803 6.03613 6.05937 6.10054 6.18837 6.22734 6.29680 6.33946 6.34776 6.46989 6.54605 6.59920 6.69518 6.78221 6.89524 6.93658 7.62524 7.97031 8.33275 8.39486 9.17845 9.90517 10.10764 11.38692 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012992 B = 0.003657 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.607894 B = 7654.042580 C = 8788.249966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.110 4.110 3 C -0.107 4.107 4 H 0.072 0.928 5 C 0.118 3.882 6 N -0.599 5.599 7 C 0.561 3.439 8 O -0.539 6.539 9 C -0.142 4.142 10 C -0.052 4.052 11 C -0.152 4.152 12 C -0.052 4.052 13 C -0.185 4.185 14 C 0.155 3.845 15 O -0.288 6.288 16 C 0.047 3.953 17 C -0.107 4.107 18 C 0.108 3.892 19 C -0.149 4.149 20 C 0.185 3.815 21 H 0.060 0.940 22 N -0.743 5.743 23 C -0.239 4.239 24 H 0.090 0.910 25 C 0.007 3.993 26 N -0.934 5.934 27 Si 0.877 3.123 28 H -0.284 1.284 29 H -0.291 1.291 30 H -0.279 1.279 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.089 0.911 38 H 0.139 0.861 39 H 0.136 0.864 40 H 0.128 0.872 41 H 0.080 0.920 42 H 0.108 0.892 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.077 0.923 46 H 0.080 0.920 47 H 0.051 0.949 48 H 0.079 0.921 49 H 0.360 0.640 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.171 19.851 -3.409 22.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.127 4.127 4 H 0.090 0.910 5 C -0.004 4.004 6 N -0.331 5.331 7 C 0.349 3.651 8 O -0.416 6.416 9 C -0.146 4.146 10 C -0.070 4.070 11 C -0.170 4.170 12 C -0.070 4.070 13 C -0.186 4.186 14 C 0.107 3.893 15 O -0.201 6.201 16 C -0.028 4.028 17 C -0.144 4.144 18 C -0.014 4.014 19 C -0.190 4.190 20 C 0.075 3.925 21 H 0.078 0.922 22 N -0.387 5.387 23 C -0.369 4.369 24 H 0.108 0.892 25 C -0.189 4.189 26 N -0.581 5.581 27 Si 0.708 3.292 28 H -0.210 1.210 29 H -0.218 1.218 30 H -0.205 1.205 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.108 0.892 38 H 0.157 0.843 39 H 0.153 0.847 40 H 0.146 0.854 41 H 0.098 0.902 42 H 0.126 0.874 43 H 0.110 0.890 44 H 0.110 0.890 45 H 0.096 0.904 46 H 0.098 0.902 47 H 0.070 0.930 48 H 0.098 0.902 49 H 0.194 0.806 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.783 19.531 -3.507 22.583 hybrid contribution -0.292 0.025 1.226 1.260 sum -11.075 19.555 -2.281 22.589 Atomic orbital electron populations 1.21858 0.96592 1.01138 1.01557 1.21418 0.94511 0.95651 1.03260 1.21853 0.97383 0.96170 0.97249 0.90969 1.21690 0.99202 0.81509 0.98036 1.48049 1.08772 1.06248 1.69989 1.18110 0.86458 0.83683 0.76816 1.90765 1.13665 1.85898 1.51321 1.19116 0.99729 0.92120 1.03647 1.21170 0.92076 0.98497 0.95287 1.20985 1.01951 0.92185 1.01898 1.20434 0.93750 0.99191 0.93622 1.20742 1.00457 0.94081 1.03323 1.19379 0.86871 0.92701 0.90315 1.86942 1.41071 1.45155 1.46902 1.23982 1.02059 0.83042 0.93760 1.21840 0.99010 0.97392 0.96159 1.21918 0.78900 1.00738 0.99851 1.22489 1.02186 0.98714 0.95567 1.20246 0.89416 0.90668 0.92159 0.92187 1.42840 1.19606 1.65890 1.10379 1.19059 0.92033 1.26593 0.99226 0.89174 1.24626 0.96447 1.00334 0.97488 1.69694 1.16281 1.41364 1.30804 0.86674 0.79441 0.77870 0.85208 1.21049 1.21790 1.20496 0.93091 0.93043 0.92840 0.91497 0.91179 0.91554 0.89226 0.84286 0.84662 0.85412 0.90214 0.87439 0.88966 0.88951 0.90439 0.90202 0.93025 0.90199 0.80608 0.93101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.67 37.16 0.36 -1.67 16 2 C -0.11 -1.69 5.21 -26.73 -0.14 -1.83 16 3 C -0.11 -1.70 2.15 -90.34 -0.19 -1.89 16 4 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 5 C 0.12 1.96 5.03 -3.71 -0.02 1.94 16 6 N -0.60 -9.88 2.97 -174.00 -0.52 -10.40 16 7 C 0.56 9.78 7.18 -12.47 -0.09 9.69 16 8 O -0.54 -11.02 16.43 5.29 0.09 -10.93 16 9 C -0.14 -2.11 4.86 -104.72 -0.51 -2.62 16 10 C -0.05 -0.63 7.50 -39.27 -0.29 -0.93 16 11 C -0.15 -1.50 10.05 -39.60 -0.40 -1.89 16 12 C -0.05 -0.48 10.02 -39.64 -0.40 -0.88 16 13 C -0.19 -1.97 6.27 -104.12 -0.65 -2.62 16 14 C 0.15 2.15 6.73 -38.44 -0.26 1.89 16 15 O -0.29 -4.07 11.03 -19.31 -0.21 -4.28 16 16 C 0.05 0.40 8.02 38.22 0.31 0.70 16 17 C -0.11 -0.80 7.13 -26.34 -0.19 -0.98 16 18 C 0.11 1.70 4.97 -3.71 -0.02 1.68 16 19 C -0.15 -2.43 5.78 -26.61 -0.15 -2.59 16 20 C 0.18 3.34 2.54 -67.73 -0.17 3.17 16 21 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 22 N -0.74 -16.12 3.53 -53.23 -0.19 -16.31 16 23 C -0.24 -6.29 10.41 -15.06 -0.16 -6.45 16 24 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 25 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 26 N -0.93 -28.37 13.97 55.49 0.78 -27.60 16 27 Si 0.88 21.42 27.74 -169.99 -4.71 16.71 16 28 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 29 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 30 H -0.28 -6.39 6.52 56.52 0.37 -6.02 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.71 6.69 -51.93 -0.35 0.36 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.07 1.19 7.71 -51.93 -0.40 0.79 16 36 H 0.07 1.17 6.64 -51.93 -0.34 0.82 16 37 H 0.09 1.52 5.71 -51.93 -0.30 1.22 16 38 H 0.14 1.63 7.29 -52.49 -0.38 1.25 16 39 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 40 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.08 1.08 5.12 -51.93 -0.27 0.81 16 46 H 0.08 1.38 7.74 -51.93 -0.40 0.98 16 47 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 48 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 49 H 0.36 7.86 3.81 -40.82 -0.16 7.71 16 50 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 388.12 15.07 5.85 5.85 Total: -1.00 -33.32 388.12 -9.67 -42.99 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -7.68 Total: 9.16 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: -3.07 Total: -5.19 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: 0.07 Total: -54.30 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.13 Total: -15.22 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.71 Total: 16.71 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.32 -9.67 -42.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037935411.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.818 kcal (2) G-P(sol) polarization free energy of solvation -33.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds