Wall clock time and date at job start Wed Apr 1 2020 02:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47239 * 2 1 4 4 H 1.09003 * 109.52065 * 304.91587 * 3 2 1 5 5 C 1.53187 * 109.50147 * 64.99601 * 3 2 1 6 6 N 1.46928 * 108.89490 * 174.65843 * 5 3 2 7 7 C 1.34776 * 120.62926 * 126.30155 * 6 5 3 8 8 O 1.21590 * 120.00211 * 354.43704 * 7 6 5 9 9 C 1.47535 * 119.99856 * 174.43559 * 7 6 5 10 10 C 1.39524 * 120.05521 * 311.83053 * 9 7 6 11 11 C 1.37786 * 120.18194 * 179.97438 * 10 9 7 12 12 C 1.38646 * 119.98105 * 359.83329 * 11 10 9 13 13 C 1.37655 * 120.31702 * 359.97438 * 12 11 10 14 14 C 1.38878 * 120.87102 * 0.10136 * 13 12 11 15 15 O 1.35861 * 111.30031 * 179.29097 * 14 13 12 16 16 C 1.43781 * 109.22974 * 19.58838 * 15 14 13 17 17 C 1.51678 * 132.14067 * 180.91760 * 13 12 11 18 18 C 1.46924 * 118.73887 * 306.32229 * 6 5 3 19 19 C 1.53193 * 108.77465 * 53.61154 * 18 6 5 20 20 C 1.53045 * 109.31110 * 305.36124 * 19 18 6 21 21 H 1.09001 * 109.45899 * 181.37156 * 20 19 18 22 22 N 1.46496 * 109.45896 * 301.34470 * 20 19 18 23 23 C 1.36934 * 120.00442 * 274.99747 * 22 20 19 24 24 H 1.08000 * 119.99368 * 0.02562 * 23 22 20 25 25 C 1.38812 * 120.00300 * 180.02562 * 23 22 20 26 26 N 1.31624 * 119.99751 * 180.02562 * 25 23 22 27 27 Si 1.86799 * 119.99885 * 0.02562 * 25 23 22 28 28 H 1.48504 * 109.46889 * 90.00306 * 27 25 23 29 29 H 1.48497 * 109.46820 * 209.99759 * 27 25 23 30 30 H 1.48495 * 109.47435 * 330.00219 * 27 25 23 31 31 H 1.08995 * 109.47291 * 59.99953 * 1 2 3 32 32 H 1.08994 * 109.47191 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.46727 * 300.00059 * 1 2 3 34 34 H 1.08991 * 109.47177 * 239.99937 * 2 1 3 35 35 H 1.09005 * 109.47292 * 119.99225 * 2 1 3 36 36 H 1.09004 * 109.58167 * 54.80046 * 5 3 2 37 37 H 1.08998 * 109.59218 * 294.52351 * 5 3 2 38 38 H 1.07998 * 119.90998 * 359.97438 * 10 9 7 39 39 H 1.07999 * 120.00935 * 179.85398 * 11 10 9 40 40 H 1.08003 * 119.84015 * 179.97438 * 12 11 10 41 41 H 1.08996 * 110.75513 * 90.43357 * 16 15 14 42 42 H 1.09005 * 110.75488 * 213.61332 * 16 15 14 43 43 H 1.08997 * 110.93697 * 282.55553 * 17 13 12 44 44 H 1.09000 * 110.93799 * 46.24015 * 17 13 12 45 45 H 1.09006 * 109.58362 * 173.39282 * 18 6 5 46 46 H 1.08998 * 109.59200 * 293.82348 * 18 6 5 47 47 H 1.08998 * 109.49869 * 65.31157 * 19 18 6 48 48 H 1.09000 * 109.49544 * 185.37967 * 19 18 6 49 49 H 0.97003 * 119.99883 * 95.00208 * 22 20 19 50 50 H 0.97001 * 119.99324 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6070 1.9819 -0.8424 5 6 1.6350 2.1281 1.3087 6 7 2.2389 3.4669 1.3511 7 6 1.4764 4.5576 1.5644 8 8 0.2666 4.4517 1.6231 9 6 2.1099 5.8801 1.7268 10 6 3.1905 6.0354 2.5956 11 6 3.7844 7.2692 2.7488 12 6 3.3102 8.3597 2.0358 13 6 2.2472 8.2169 1.1731 14 6 1.6295 6.9849 1.0012 15 8 0.5978 7.0687 0.1211 16 6 0.7545 8.2515 -0.6812 17 6 1.5350 9.2003 0.2641 18 6 3.6895 3.5941 1.1561 19 6 4.0746 2.8940 -0.1510 20 6 3.5688 1.4499 -0.1197 21 1 3.8626 0.9422 -1.0384 22 7 4.1511 0.7537 1.0303 23 6 5.3898 0.1791 0.9276 24 1 5.9377 0.2396 -0.0012 25 6 5.9413 -0.4810 2.0171 26 7 7.1322 -1.0328 1.9184 27 14 4.9932 -0.5861 3.6232 28 1 4.1525 -1.8102 3.6225 29 1 5.9483 -0.6423 4.7589 30 1 4.1253 0.6104 3.7650 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5137 0.8901 36 1 1.9907 1.5398 2.1546 37 1 0.5495 2.2152 1.3550 38 1 3.5625 5.1862 3.1495 39 1 4.6192 7.3868 3.4238 40 1 3.7772 9.3259 2.1580 41 1 1.3282 8.0339 -1.5820 42 1 -0.2163 8.6765 -0.9365 43 1 0.8606 9.8394 0.8340 44 1 2.2508 9.7974 -0.3008 45 1 3.9595 4.6486 1.0990 46 1 4.2128 3.1254 1.9895 47 1 3.6225 3.4196 -0.9921 48 1 5.1591 2.8979 -0.2600 49 1 3.6591 0.6997 1.8645 50 1 7.5176 -1.4937 2.6799 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037935411.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:30 Heat of formation + Delta-G solvation = -43.150392 kcal Electronic energy + Delta-G solvation = -31609.518611 eV Core-core repulsion = 27601.538079 eV Total energy + Delta-G solvation = -4007.980532 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.35566 -41.27524 -39.32613 -38.29890 -35.99240 -35.44505 -33.74130 -33.55719 -31.52975 -31.42792 -30.47078 -29.75529 -26.95023 -25.33531 -25.09982 -24.59094 -23.61958 -22.96699 -22.15445 -20.99719 -19.94807 -19.73833 -18.45676 -18.17858 -17.73403 -17.36220 -16.86048 -16.66218 -16.28223 -16.06643 -15.95103 -15.50426 -15.08417 -14.98007 -14.84183 -14.48846 -14.33589 -14.28182 -14.22209 -13.98340 -13.76937 -13.58170 -13.30914 -13.01115 -12.96238 -12.82199 -12.72166 -12.67593 -12.49518 -12.25888 -12.20090 -12.03946 -11.87040 -11.77935 -11.64221 -11.55673 -11.19466 -11.01429 -10.85145 -9.93308 -9.70117 -9.23971 -9.20830 -7.97458 -5.28565 -0.08680 0.26088 1.36910 1.39037 1.45412 1.57547 1.92044 2.24061 2.49713 2.63847 3.33591 3.36043 3.43255 3.58426 3.64380 3.73061 3.90085 3.95322 3.98279 4.13323 4.17120 4.21421 4.24405 4.30411 4.32833 4.40177 4.41567 4.51481 4.56290 4.61126 4.75242 4.80621 4.82665 4.86907 4.91879 4.95457 4.99242 5.10615 5.13038 5.15593 5.19502 5.23270 5.29254 5.34382 5.38279 5.44757 5.59107 5.60163 5.84474 6.09200 6.26137 6.32030 7.01919 7.12527 7.88644 8.07960 9.24370 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012992 B = 0.003657 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.607894 B = 7654.042580 C = 8788.249966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.108 4.108 3 C -0.095 4.095 4 H 0.083 0.917 5 C 0.119 3.881 6 N -0.598 5.598 7 C 0.560 3.440 8 O -0.579 6.579 9 C -0.174 4.174 10 C -0.064 4.064 11 C -0.145 4.145 12 C -0.043 4.043 13 C -0.184 4.184 14 C 0.128 3.872 15 O -0.326 6.326 16 C 0.036 3.964 17 C -0.099 4.099 18 C 0.116 3.884 19 C -0.142 4.142 20 C 0.180 3.820 21 H 0.052 0.948 22 N -0.740 5.740 23 C -0.212 4.212 24 H 0.063 0.937 25 C -0.056 4.056 26 N -0.983 5.983 27 Si 0.938 3.062 28 H -0.283 1.283 29 H -0.299 1.299 30 H -0.258 1.258 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.050 0.950 34 H 0.066 0.934 35 H 0.051 0.949 36 H 0.056 0.944 37 H 0.087 0.913 38 H 0.137 0.863 39 H 0.164 0.836 40 H 0.166 0.834 41 H 0.088 0.912 42 H 0.127 0.873 43 H 0.106 0.894 44 H 0.121 0.879 45 H 0.099 0.901 46 H 0.064 0.936 47 H 0.069 0.931 48 H 0.070 0.930 49 H 0.362 0.638 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.909 23.002 -3.381 25.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.147 4.147 3 C -0.114 4.114 4 H 0.101 0.899 5 C -0.004 4.004 6 N -0.329 5.329 7 C 0.350 3.650 8 O -0.460 6.460 9 C -0.178 4.178 10 C -0.082 4.082 11 C -0.163 4.163 12 C -0.060 4.060 13 C -0.185 4.185 14 C 0.081 3.919 15 O -0.240 6.240 16 C -0.038 4.038 17 C -0.135 4.135 18 C -0.006 4.006 19 C -0.183 4.183 20 C 0.071 3.929 21 H 0.070 0.930 22 N -0.384 5.384 23 C -0.343 4.343 24 H 0.081 0.919 25 C -0.248 4.248 26 N -0.634 5.634 27 Si 0.767 3.233 28 H -0.210 1.210 29 H -0.226 1.226 30 H -0.183 1.183 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.105 0.895 38 H 0.154 0.846 39 H 0.182 0.818 40 H 0.184 0.816 41 H 0.106 0.894 42 H 0.145 0.855 43 H 0.124 0.876 44 H 0.139 0.861 45 H 0.117 0.883 46 H 0.082 0.918 47 H 0.088 0.912 48 H 0.088 0.912 49 H 0.196 0.804 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.551 22.722 -3.508 25.730 hybrid contribution -0.076 -0.854 1.093 1.389 sum -11.627 21.867 -2.415 24.884 Atomic orbital electron populations 1.21797 0.94698 1.02117 1.01882 1.21389 0.96175 0.94777 1.02312 1.21749 0.95527 0.96834 0.97330 0.89882 1.21634 0.99103 0.81759 0.97869 1.48091 1.08960 1.06108 1.69706 1.18622 0.86050 0.84729 0.75632 1.90722 1.15397 1.86622 1.53225 1.19112 1.01525 0.91032 1.06082 1.21239 0.91924 0.99789 0.95269 1.21362 1.02001 0.91232 1.01682 1.20903 0.92684 1.00535 0.91919 1.21198 1.00289 0.93570 1.03451 1.19695 0.87553 0.93731 0.90942 1.86888 1.41752 1.47620 1.47707 1.24335 1.03776 0.81909 0.93767 1.21929 0.99323 0.96713 0.95555 1.21854 0.78288 1.01809 0.98610 1.22371 1.01575 0.97518 0.96792 1.20435 0.90840 0.91201 0.90387 0.92971 1.42776 1.18162 1.65910 1.11585 1.18996 0.92888 1.24769 0.97693 0.91945 1.25261 0.97420 1.01200 1.00900 1.69855 1.18392 1.43521 1.31668 0.85675 0.78173 0.78514 0.80957 1.21003 1.22567 1.18269 0.92139 0.91778 0.93116 0.91492 0.93027 0.92539 0.89463 0.84568 0.81835 0.81607 0.89374 0.85469 0.87595 0.86069 0.88327 0.91761 0.91223 0.91175 0.80401 0.93601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 9.67 71.98 0.70 -3.01 16 2 C -0.11 -3.25 5.21 30.59 0.16 -3.09 16 3 C -0.09 -2.96 2.15 -10.61 -0.02 -2.98 16 4 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 5 C 0.12 3.94 5.03 86.36 0.43 4.37 16 6 N -0.60 -19.64 2.97 -822.66 -2.45 -22.08 16 7 C 0.56 19.67 7.18 86.70 0.62 20.30 16 8 O -0.58 -24.28 16.43 -4.00 -0.07 -24.34 16 9 C -0.17 -5.07 4.86 -19.93 -0.10 -5.17 16 10 C -0.06 -1.47 7.50 22.47 0.17 -1.31 16 11 C -0.14 -2.39 10.05 22.26 0.22 -2.17 16 12 C -0.04 -0.61 10.02 22.23 0.22 -0.39 16 13 C -0.18 -3.38 6.27 -19.54 -0.12 -3.51 16 14 C 0.13 3.43 6.73 23.01 0.15 3.59 16 15 O -0.33 -9.06 11.03 -91.99 -1.02 -10.07 16 16 C 0.04 0.54 8.02 72.67 0.58 1.12 16 17 C -0.10 -1.11 7.13 30.85 0.22 -0.89 16 18 C 0.12 3.58 4.97 86.36 0.43 4.01 16 19 C -0.14 -4.56 5.78 30.67 0.18 -4.38 16 20 C 0.18 6.44 2.54 45.12 0.11 6.56 16 21 H 0.05 1.97 8.08 -2.39 -0.02 1.95 16 22 N -0.74 -32.13 3.53 -322.32 -1.14 -33.27 16 23 C -0.21 -11.36 10.41 84.03 0.87 -10.48 16 24 H 0.06 3.66 8.06 -2.91 -0.02 3.64 16 25 C -0.06 -3.21 5.50 84.86 0.47 -2.74 16 26 N -0.98 -61.38 13.97 21.65 0.30 -61.08 16 27 Si 0.94 44.77 27.74 68.60 1.90 46.67 16 28 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 29 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 30 H -0.26 -11.23 6.52 99.48 0.65 -10.58 16 31 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.06 1.44 8.14 -2.39 -0.02 1.43 16 33 H 0.05 1.30 6.69 -2.38 -0.02 1.28 16 34 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.05 1.74 7.71 -2.38 -0.02 1.72 16 36 H 0.06 1.98 6.64 -2.39 -0.02 1.96 16 37 H 0.09 2.97 5.71 -2.39 -0.01 2.95 16 38 H 0.14 3.10 7.29 -2.91 -0.02 3.08 16 39 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 40 H 0.17 1.14 8.06 -2.91 -0.02 1.12 16 41 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.13 1.29 8.14 -2.38 -0.02 1.27 16 43 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.10 2.64 5.12 -2.38 -0.01 2.63 16 46 H 0.06 2.20 7.74 -2.39 -0.02 2.18 16 47 H 0.07 2.00 8.14 -2.39 -0.02 1.99 16 48 H 0.07 2.40 8.14 -2.39 -0.02 2.39 16 49 H 0.36 15.64 3.81 -92.71 -0.35 15.28 16 50 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -75.26 388.12 3.38 -71.88 By element: Atomic # 1 Polarization: 31.93 SS G_CDS: 0.54 Total: 32.46 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: 5.31 Total: -0.17 kcal Atomic # 7 Polarization: -113.15 SS G_CDS: -3.28 Total: -116.43 kcal Atomic # 8 Polarization: -33.33 SS G_CDS: -1.08 Total: -34.42 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.90 Total: 46.67 kcal Total: -75.26 3.38 -71.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037935411.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.725 kcal (2) G-P(sol) polarization free energy of solvation -75.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds