Wall clock time and date at job start Wed Apr 1 2020 02:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47142 * 2 1 4 4 H 1.09001 * 109.87601 * 55.80473 * 3 2 1 5 5 C 1.54330 * 109.88238 * 294.79261 * 3 2 1 6 6 H 1.09007 * 110.71665 * 336.77567 * 5 3 2 7 7 N 1.46498 * 110.72039 * 99.86944 * 5 3 2 8 8 C 1.34777 * 120.00118 * 204.99778 * 7 5 3 9 9 O 1.21280 * 119.99563 * 0.02562 * 8 7 5 10 10 C 1.50697 * 119.99992 * 179.72820 * 8 7 5 11 11 H 1.08999 * 109.69806 * 300.27608 * 10 8 7 12 12 C 1.53409 * 109.69929 * 60.83644 * 10 8 7 13 13 O 1.42829 * 108.37406 * 184.41554 * 12 10 8 14 14 C 1.35849 * 117.86578 * 310.81979 * 13 12 10 15 15 C 1.39144 * 118.50255 * 197.16849 * 14 13 12 16 16 C 1.37970 * 120.21413 * 180.15912 * 15 14 13 17 17 C 1.38290 * 119.96014 * 0.04798 * 16 15 14 18 18 C 1.38106 * 119.98118 * 359.92087 * 17 16 15 19 19 C 1.38369 * 121.80194 * 17.23594 * 14 13 12 20 20 C 1.50798 * 121.41845 * 359.51648 * 19 14 13 21 21 C 1.55153 * 102.93985 * 218.23665 * 5 3 2 22 22 C 1.54908 * 101.58713 * 35.50116 * 21 5 3 23 23 N 1.47019 * 110.01166 * 176.90838 * 3 2 1 24 24 C 1.36938 * 125.64455 * 298.39226 * 23 3 2 25 25 H 1.07998 * 120.00278 * 345.37231 * 24 23 3 26 26 C 1.38813 * 119.99554 * 165.36807 * 24 23 3 27 27 N 1.31625 * 120.00655 * 0.02562 * 26 24 23 28 28 Si 1.86807 * 119.99937 * 179.97438 * 26 24 23 29 29 H 1.48497 * 109.46947 * 0.02562 * 28 26 24 30 30 H 1.48502 * 109.46763 * 120.00246 * 28 26 24 31 31 H 1.48497 * 109.47093 * 240.00570 * 28 26 24 32 32 H 1.09000 * 109.47475 * 185.58496 * 1 2 3 33 33 H 1.09008 * 109.47141 * 305.58495 * 1 2 3 34 34 H 1.08998 * 109.47058 * 65.58185 * 1 2 3 35 35 H 1.08996 * 109.46865 * 239.99972 * 2 1 3 36 36 H 1.09004 * 109.47092 * 119.99724 * 2 1 3 37 37 H 0.97002 * 119.99945 * 25.00837 * 7 5 3 38 38 H 1.08992 * 109.68579 * 304.14427 * 12 10 8 39 39 H 1.09006 * 109.67967 * 64.66296 * 12 10 8 40 40 H 1.07997 * 119.89208 * 0.19093 * 15 14 13 41 41 H 1.08000 * 120.02241 * 180.02562 * 16 15 14 42 42 H 1.07995 * 120.01446 * 179.97438 * 17 16 15 43 43 H 1.07997 * 119.84327 * 179.97438 * 18 17 16 44 44 H 1.08995 * 109.40734 * 257.74219 * 20 19 14 45 45 H 1.08998 * 109.46840 * 137.86249 * 20 19 14 46 46 H 1.09004 * 111.00117 * 153.57351 * 21 5 3 47 47 H 1.09000 * 111.00451 * 277.42156 * 21 5 3 48 48 H 1.08990 * 110.37084 * 204.14953 * 22 21 5 49 49 H 1.09007 * 110.45933 * 81.87022 * 22 21 5 50 50 H 0.96998 * 120.00340 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6204 1.9839 0.8479 5 6 1.6412 2.1402 -1.3175 6 1 1.4660 1.4067 -2.1046 7 7 0.4570 2.9801 -1.1215 8 6 -0.3466 3.2662 -2.1649 9 8 -0.0895 2.8279 -3.2662 10 6 -1.5680 4.1251 -1.9620 11 1 -2.2326 3.6536 -1.2381 12 6 -1.1477 5.5098 -1.4527 13 8 -2.3279 6.2637 -1.1722 14 6 -3.2968 6.3041 -2.1236 15 6 -4.2685 7.2965 -2.0401 16 6 -5.2707 7.3682 -2.9857 17 6 -5.3114 6.4510 -4.0198 18 6 -4.3482 5.4650 -4.1061 19 6 -3.3384 5.3895 -3.1611 20 6 -2.3001 4.3040 -3.2943 21 6 2.8844 3.0106 -1.6399 22 6 4.0369 2.1043 -1.1400 23 7 3.5082 1.4570 0.0745 24 6 4.2602 0.9534 1.1023 25 1 3.7934 0.7150 2.0465 26 6 5.6224 0.7494 0.9303 27 7 6.1915 1.0405 -0.2203 28 14 6.6484 0.0632 2.3325 29 1 5.7775 -0.1786 3.5108 30 1 7.2734 -1.2155 1.9087 31 1 7.7096 1.0376 2.6924 32 1 -0.3634 -1.0228 0.1000 33 1 -0.3634 0.5981 0.8358 34 1 -0.3633 0.4248 -0.9357 35 1 1.8933 -0.5138 -0.8900 36 1 1.8934 -0.5138 0.8900 37 1 0.2514 3.3304 -0.2406 38 1 -0.5557 5.4026 -0.5439 39 1 -0.5592 6.0187 -2.2162 40 1 -4.2378 8.0132 -1.2329 41 1 -6.0231 8.1400 -2.9181 42 1 -6.0957 6.5061 -4.7602 43 1 -4.3824 4.7496 -4.9144 44 1 -1.5837 4.5811 -4.0676 45 1 -2.7863 3.3681 -3.5696 46 1 2.9670 3.1922 -2.7115 47 1 2.8579 3.9496 -1.0870 48 1 4.9142 2.7044 -0.8988 49 1 4.2857 1.3549 -1.8915 50 1 7.1435 0.8982 -0.3403 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087649577.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:21 Heat of formation + Delta-G solvation = -34.818679 kcal Electronic energy + Delta-G solvation = -30504.035946 eV Core-core repulsion = 26496.416704 eV Total energy + Delta-G solvation = -4007.619242 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.19213 -39.71255 -37.93999 -37.58880 -34.39376 -34.13956 -32.82044 -31.85227 -30.95726 -30.49957 -28.98253 -26.72714 -25.96974 -24.97613 -24.05299 -22.83975 -22.25699 -21.06353 -20.32387 -20.12029 -19.32072 -18.12476 -17.47890 -16.95932 -16.61505 -15.89270 -15.83105 -15.35543 -14.96934 -14.79088 -14.40617 -14.10396 -14.04976 -13.94769 -13.73222 -13.57188 -13.49177 -13.26227 -13.03103 -12.72406 -12.06432 -12.05491 -11.97509 -11.75568 -11.70130 -11.41487 -11.19357 -11.13273 -10.94299 -10.87548 -10.86524 -10.66172 -10.50166 -10.32922 -10.08258 -9.81813 -9.69965 -9.66359 -9.06136 -8.72566 -8.61607 -8.43587 -6.84842 -5.79267 -3.15855 1.03393 1.14617 2.58217 2.93894 3.20005 3.36021 3.42189 3.44189 3.49191 4.21046 4.33145 4.42764 4.48100 4.55677 4.72600 4.80160 4.92488 5.04973 5.15220 5.19786 5.23286 5.28049 5.32272 5.42185 5.46374 5.50898 5.65928 5.68897 5.70944 5.75553 5.81054 5.83382 6.00318 6.01326 6.17755 6.19193 6.23433 6.25454 6.36567 6.41653 6.48311 6.50927 6.61848 6.68096 6.90446 7.08748 7.14531 7.46429 7.55550 7.61694 7.75238 8.21404 8.27232 9.14176 9.75152 10.42587 11.32709 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.025011 B = 0.002221 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.256376 B =12603.869849 C =12762.383141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C 0.161 3.839 4 H 0.035 0.965 5 C 0.137 3.863 6 H 0.095 0.905 7 N -0.712 5.712 8 C 0.521 3.479 9 O -0.535 6.535 10 C -0.147 4.147 11 H 0.111 0.889 12 C 0.073 3.927 13 O -0.310 6.310 14 C 0.128 3.872 15 C -0.148 4.148 16 C -0.091 4.091 17 C -0.152 4.152 18 C -0.084 4.084 19 C -0.154 4.154 20 C -0.059 4.059 21 C -0.156 4.156 22 C 0.174 3.826 23 N -0.594 5.594 24 C -0.228 4.228 25 H 0.076 0.924 26 C -0.004 4.004 27 N -0.916 5.916 28 Si 0.910 3.090 29 H -0.279 1.279 30 H -0.290 1.290 31 H -0.290 1.290 32 H 0.044 0.956 33 H 0.046 0.954 34 H 0.047 0.953 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.398 0.602 38 H 0.114 0.886 39 H 0.073 0.927 40 H 0.130 0.870 41 H 0.127 0.873 42 H 0.123 0.877 43 H 0.125 0.875 44 H 0.091 0.909 45 H 0.088 0.912 46 H 0.062 0.938 47 H 0.061 0.939 48 H 0.074 0.926 49 H 0.028 0.972 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.512 10.629 -4.788 24.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C 0.052 3.948 4 H 0.052 0.948 5 C 0.032 3.968 6 H 0.113 0.887 7 N -0.362 5.362 8 C 0.306 3.694 9 O -0.411 6.411 10 C -0.169 4.169 11 H 0.129 0.871 12 C -0.003 4.003 13 O -0.224 6.224 14 C 0.083 3.917 15 C -0.166 4.166 16 C -0.109 4.109 17 C -0.170 4.170 18 C -0.102 4.102 19 C -0.155 4.155 20 C -0.096 4.096 21 C -0.196 4.196 22 C 0.049 3.951 23 N -0.318 5.318 24 C -0.356 4.356 25 H 0.094 0.906 26 C -0.201 4.201 27 N -0.562 5.562 28 Si 0.740 3.260 29 H -0.204 1.204 30 H -0.217 1.217 31 H -0.217 1.217 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.232 0.768 38 H 0.132 0.868 39 H 0.091 0.909 40 H 0.148 0.852 41 H 0.145 0.855 42 H 0.141 0.859 43 H 0.143 0.857 44 H 0.109 0.891 45 H 0.107 0.893 46 H 0.081 0.919 47 H 0.080 0.920 48 H 0.092 0.908 49 H 0.046 0.954 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -21.051 10.337 -5.349 24.054 hybrid contribution 0.584 -0.495 0.992 1.253 sum -20.467 9.841 -4.357 23.125 Atomic orbital electron populations 1.21768 0.97282 1.00530 1.00832 1.22011 0.93541 0.99175 1.02429 1.21083 0.87120 0.93379 0.93178 0.94766 1.22154 0.83248 0.92480 0.98886 0.88686 1.46121 1.26767 1.52070 1.11213 1.20058 0.83490 0.81039 0.84828 1.90715 1.73211 1.52839 1.24377 1.22025 0.97198 0.96833 1.00844 0.87111 1.22949 0.85275 0.89112 1.02925 1.86031 1.26856 1.69331 1.40183 1.18744 0.89949 0.94072 0.88975 1.20605 0.95920 0.98519 1.01592 1.20929 0.97435 0.98655 0.93922 1.21030 0.99934 0.96540 0.99533 1.20924 0.93349 0.98193 0.97712 1.19905 0.99728 0.98423 0.97459 1.20311 0.95845 0.97332 0.96156 1.23421 0.96788 0.99048 1.00331 1.21430 0.93079 0.92920 0.87707 1.44450 0.98365 1.68329 1.20701 1.18978 0.89859 1.35950 0.90818 0.90649 1.24922 0.97257 1.00902 0.96988 1.69935 1.10557 1.52845 1.22889 0.86084 0.80253 0.78494 0.81153 1.20433 1.21684 1.21731 0.93671 0.93457 0.93404 0.92376 0.91694 0.76786 0.86760 0.90854 0.85227 0.85492 0.85888 0.85661 0.89053 0.89325 0.91928 0.92015 0.90790 0.95385 0.93642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.57 37.16 0.36 -1.74 16 2 C -0.13 -2.38 5.42 -26.73 -0.14 -2.53 16 3 C 0.16 3.06 2.93 -66.95 -0.20 2.86 16 4 H 0.03 0.63 7.72 -51.93 -0.40 0.23 16 5 C 0.14 2.32 2.02 -66.10 -0.13 2.19 16 6 H 0.10 1.79 7.19 -51.93 -0.37 1.41 16 7 N -0.71 -9.30 4.78 -52.03 -0.25 -9.55 16 8 C 0.52 6.87 7.15 -10.99 -0.08 6.79 16 9 O -0.53 -9.07 15.44 5.56 0.09 -8.98 16 10 C -0.15 -1.50 2.75 -91.52 -0.25 -1.75 16 11 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 12 C 0.07 0.69 6.26 37.37 0.23 0.93 16 13 O -0.31 -3.35 10.27 -19.27 -0.20 -3.54 16 14 C 0.13 1.36 6.47 -39.20 -0.25 1.11 16 15 C -0.15 -1.37 9.94 -39.34 -0.39 -1.76 16 16 C -0.09 -0.72 10.04 -39.66 -0.40 -1.12 16 17 C -0.15 -1.21 10.04 -39.61 -0.40 -1.60 16 18 C -0.08 -0.75 9.67 -39.53 -0.38 -1.13 16 19 C -0.15 -1.58 5.75 -104.43 -0.60 -2.18 16 20 C -0.06 -0.62 4.66 -27.80 -0.13 -0.75 16 21 C -0.16 -2.90 6.77 -24.59 -0.17 -3.07 16 22 C 0.17 4.08 5.41 -2.53 -0.01 4.07 16 23 N -0.59 -14.25 3.13 -162.57 -0.51 -14.76 16 24 C -0.23 -6.04 9.76 -15.06 -0.15 -6.18 16 25 H 0.08 1.95 7.83 -52.49 -0.41 1.54 16 26 C 0.00 -0.10 5.47 -17.43 -0.10 -0.19 16 27 N -0.92 -26.21 10.57 55.49 0.59 -25.62 16 28 Si 0.91 21.54 29.55 -169.99 -5.02 16.52 16 29 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 30 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 31 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.62 8.14 -51.92 -0.42 0.19 16 34 H 0.05 0.68 7.40 -51.93 -0.38 0.30 16 35 H 0.06 1.13 8.07 -51.93 -0.42 0.71 16 36 H 0.06 1.26 7.91 -51.93 -0.41 0.85 16 37 H 0.40 4.27 7.81 -40.82 -0.32 3.95 16 38 H 0.11 0.89 7.54 -51.93 -0.39 0.50 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 41 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 42 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 43 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 44 H 0.09 1.05 7.70 -51.93 -0.40 0.65 16 45 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 47 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 48 H 0.07 1.93 6.93 -51.93 -0.36 1.57 16 49 H 0.03 0.72 8.06 -51.93 -0.42 0.31 16 50 H 0.25 7.05 8.31 -40.82 -0.34 6.72 16 LS Contribution 396.84 15.07 5.98 5.98 Total: -1.00 -31.05 396.84 -10.59 -41.64 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -8.07 Total: 4.39 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: -3.19 Total: -6.08 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: -0.17 Total: -49.93 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: -0.11 Total: -12.53 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.05 -10.59 -41.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087649577.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.818 kcal (2) G-P(sol) polarization free energy of solvation -31.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds